genome.fa.s6.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  54  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16249169--16249211	10	4.5	10	82	11	54	0	20	0	79	0.74
16249158--16249209	17	3.2	17	83	5	63	0	23	0	76	0.78
16249692--16249858	30	5.7	30	79	7	164	37	2	23	35	1.70
16252337--16252398	30	2.1	30	84	6	81	48	11	6	33	1.65
16258245--16258280	15	2.4	15	100	0	72	55	5	19	19	1.62
16262908--16262943	15	2.4	15	100	0	72	55	5	19	19	1.62
16263753--16263958	103	2.0	103	96	0	376	51	13	10	24	1.73
16271782--16271825	23	1.9	22	82	17	54	36	25	0	38	1.56
16271969--16272155	51	3.7	50	83	4	250	30	28	17	22	1.97
16271967--16272151	101	1.8	101	92	3	318	30	28	17	22	1.97
16273758--16273805	25	1.9	25	100	0	96	58	0	8	33	1.28
16275290--16275330	20	2.0	21	85	4	57	39	0	4	56	1.21
16275321--16275391	25	2.8	25	82	4	79	28	5	8	57	1.51
16282391--16282433	15	2.9	14	77	12	50	34	0	0	65	0.93
16288390--16288459	31	2.3	31	85	5	97	30	22	7	40	1.81
16288546--16288570	12	2.1	12	100	0	50	48	0	0	52	1.00
16288598--16288638	22	1.9	21	85	5	55	56	2	0	41	1.13
16288772--16288831	27	2.2	27	82	5	77	30	1	3	65	1.19
16288873--16288929	24	2.3	25	79	8	64	33	1	1	63	1.15
16290420--16290511	21	4.4	21	87	0	130	4	44	18	32	1.69
16293344--16293639	9	31.4	9	75	10	218	34	2	15	48	1.57
16298039--16298280	103	2.3	103	88	4	355	40	28	4	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16298268--16298391	7	17.9	7	68	8	65	45	33	2	18	1.62
16298261--16298391	14	8.9	14	70	15	77	47	32	2	18	1.61
16298242--16298329	28	3.1	28	74	6	79	50	27	0	22	1.50
16298268--16298440	21	8.3	19	67	20	62	45	32	3	19	1.67
16298504--16298571	22	3.1	22	79	8	77	36	41	5	16	1.72
16298741--16298771	12	2.6	12	100	0	62	48	6	0	45	1.28
16298764--16298788	10	2.5	10	100	0	50	36	8	0	56	1.29
16298916--16299153	73	3.3	73	80	1	273	27	23	19	28	1.99
16299056--16299380	112	2.9	112	83	6	347	24	26	23	26	2.00
16299706--16299765	30	2.1	27	81	9	66	45	3	13	38	1.60
16301112--16301158	24	2.0	23	87	4	67	44	0	36	19	1.51
16314053--16314103	16	3.2	16	85	0	66	45	7	21	25	1.79
16314215--16314300	26	3.3	24	71	17	73	48	3	2	45	1.32
16314237--16314266	15	2.0	15	93	0	51	56	3	0	40	1.16
16314614--16314710	46	2.1	46	100	0	194	43	16	11	28	1.83
16318297--16318336	21	2.0	21	90	5	64	27	5	30	37	1.78
16341215--16341274	20	3.2	20	64	22	56	45	15	5	35	1.68
16341199--16341274	37	2.1	37	100	0	152	42	15	5	36	1.70
16342880--16343065	40	4.7	40	88	5	252	26	27	22	24	2.00
16351734--16351825	39	2.3	39	88	5	132	25	28	22	23	2.00
16351715--16351878	40	4.1	40	80	10	176	24	27	23	25	2.00
16360184--16360250	21	3.2	21	69	0	62	25	1	26	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16360301--16360405	34	3.1	33	85	5	138	40	0	17	42	1.49
16360474--16360987	126	4.1	126	90	2	755	38	17	16	27	1.91
16360474--16360987	253	2.0	252	88	2	755	38	17	16	27	1.91
16364047--16364103	25	2.3	23	81	18	71	54	1	0	43	1.10
16364233--16364272	21	1.9	21	94	0	71	15	17	37	30	1.90
16365813--16365848	15	2.4	15	100	0	72	13	25	44	16	1.85
16366334--16366402	30	2.3	30	87	0	102	39	1	24	34	1.65
16370011--16370053	24	1.9	22	86	13	61	18	2	18	60	1.47
16371142--16371166	2	12.5	2	100	0	50	48	0	0	52	1.00
16372691--16372731	9	4.7	9	82	11	50	68	0	0	31	0.90
16376501--16376559	24	2.5	24	100	0	118	25	10	32	32	1.89
16377371--16377546	63	2.8	63	80	3	185	38	29	5	26	1.79
16380526--16380618	43	2.2	43	90	3	143	21	32	21	24	1.98
16381123--16381184	25	2.4	26	89	2	90	40	1	14	43	1.55
16381123--16381194	17	4.2	17	72	13	58	40	1	13	44	1.53
16381287--16381346	17	3.5	17	80	8	68	36	0	16	46	1.47
16381290--16381346	9	6.8	8	80	7	60	33	0	17	49	1.47
16381298--16381470	46	3.6	46	72	13	159	34	0	17	47	1.53
16381290--16381375	17	4.8	17	73	16	66	34	0	16	48	1.46
16381314--16381470	53	2.9	54	72	14	128	34	0	17	47	1.53
16382091--16382137	21	2.2	21	84	0	58	46	0	12	40	1.42
16384231--16384257	2	13.5	2	100	0	54	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16384386--16385137	199	3.8	199	92	0	1193	26	23	17	32	1.97
16385324--16385366	19	2.3	19	95	0	77	30	6	0	62	1.21
16385289--16385347	30	2.0	30	86	6	84	22	3	0	74	0.96
16385326--16385366	9	4.4	9	90	6	64	29	7	0	63	1.21
16385463--16385636	88	2.0	89	86	1	242	43	25	2	28	1.67
16385617--16385656	14	2.9	14	88	0	62	30	50	0	20	1.49
16385617--16385650	7	4.9	7	92	0	59	29	52	0	17	1.45
16385941--16386181	114	2.1	113	84	0	302	29	26	21	21	1.99
16388430--16388471	15	2.9	15	82	3	50	64	0	14	21	1.29
16390526--16390570	22	2.0	22	86	8	63	31	11	4	53	1.56
16391130--16391224	42	2.3	42	87	3	129	50	17	21	10	1.76
16400558--16400992	216	2.0	215	95	0	789	34	19	13	32	1.91
16409679--16409763	38	2.2	38	85	8	120	34	0	7	58	1.25
16413970--16414033	12	5.4	12	74	10	51	73	9	9	7	1.25
16416172--16416338	87	1.9	87	85	3	228	25	22	26	25	2.00
16416346--16417000	132	5.0	132	92	0	1051	27	17	24	30	1.97
16416807--16417146	44	7.8	44	67	10	169	30	19	22	27	1.98
16416763--16416954	44	4.4	44	66	12	126	27	16	26	29	1.97
16416937--16417146	87	2.4	88	86	3	291	31	21	21	25	1.98
16416937--16417170	44	5.3	43	73	14	140	31	20	22	25	1.98
16419040--16419090	26	2.0	25	81	7	59	27	1	9	60	1.39
16419302--16419334	14	2.3	15	94	5	59	33	12	0	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16420892--16420958	13	5.2	13	85	0	89	34	23	4	37	1.75
16421250--16421358	45	2.4	45	78	6	121	21	22	15	40	1.91
16421279--16421366	45	2.0	45	90	4	142	20	17	18	44	1.87
16421374--16421406	16	2.1	16	88	11	50	45	12	0	42	1.41
16422658--16422821	85	1.9	84	92	1	274	30	21	17	31	1.96
16423340--16423447	28	3.8	28	80	7	119	56	6	12	24	1.60
16428549--16428629	37	2.2	38	90	2	128	64	0	4	30	1.15
16428535--16428574	11	3.5	11	83	12	53	52	0	5	42	1.23
16430169--16430201	15	2.2	15	89	10	50	48	0	0	51	1.00
16431217--16431266	25	2.0	26	84	7	68	32	8	8	52	1.60
16432666--16432969	43	7.2	43	86	3	402	27	31	18	23	1.97
16435431--16435480	25	2.0	25	84	0	64	18	2	6	74	1.12
16435442--16435480	19	2.1	18	85	4	51	17	2	2	76	1.01
16435918--16436022	47	2.2	47	94	1	183	44	0	6	48	1.29
16436008--16436060	25	2.1	26	82	3	63	18	3	7	69	1.28
16436428--16436493	15	4.5	15	72	11	57	34	40	1	22	1.63
16436825--16436863	14	2.7	15	80	11	55	41	28	0	30	1.57
16437435--16437564	41	3.2	40	83	2	134	31	29	20	18	1.96
16437673--16437787	40	2.9	39	82	11	144	21	24	21	32	1.98
16440835--16441061	43	5.3	43	86	3	314	29	33	16	20	1.94
16440835--16441062	85	2.7	85	86	2	314	30	33	16	20	1.94
16441236--16441295	18	3.4	18	64	13	52	40	10	6	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16446411--16446462	24	2.2	24	89	0	77	53	7	3	34	1.48
16447951--16448017	34	1.9	35	87	3	100	31	8	14	44	1.76
16447966--16448005	20	2.0	20	90	0	62	27	10	12	50	1.72
16448092--16448168	20	3.8	20	73	13	86	33	3	3	58	1.35
16450813--16450839	13	2.1	13	100	0	54	48	14	14	22	1.81
16451030--16451075	24	1.9	24	95	0	83	36	4	45	13	1.63
16461527--16461568	20	2.0	20	86	9	57	47	11	2	38	1.53
16466844--16466936	35	2.4	38	86	13	120	45	6	11	36	1.67
16466971--16467011	21	2.0	21	85	0	55	56	4	7	31	1.48
16467020--16467076	25	2.3	24	85	11	71	75	3	3	17	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141