genome.fa.s6.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  112  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32723911--32724278	200	1.8	200	93	0	637	28	10	20	40	1.86
32730864--32730939	40	1.9	39	89	2	116	26	6	28	38	1.81
32733322--32733407	40	2.2	40	85	4	111	32	8	29	30	1.86
32733535--32733579	10	4.3	10	78	10	54	37	2	0	60	1.09
32736501--32736640	25	5.6	25	73	9	108	22	22	19	35	1.96
32736513--32736640	50	2.6	49	82	8	145	23	22	20	33	1.97
32736782--32736833	26	2.0	26	85	7	70	40	5	17	36	1.73
32748827--32748873	23	2.0	23	100	0	94	42	4	4	48	1.42
32749531--32749582	25	2.0	26	85	10	72	55	11	15	17	1.68
32752207--32752270	24	2.6	25	78	9	62	23	12	32	31	1.92
32757501--32757604	52	2.0	52	84	0	136	26	25	13	33	1.93
32758808--32758843	18	2.0	18	88	0	54	66	0	5	27	1.13
32759240--32759362	35	3.5	34	76	10	108	21	26	13	38	1.91
32760597--32760647	20	2.4	21	81	18	61	41	7	1	49	1.43
32760605--32760647	20	2.1	21	87	12	63	41	9	0	48	1.35
32760605--32760676	18	3.8	20	72	20	64	38	11	0	50	1.38
32761472--32761538	29	2.3	29	84	2	82	52	4	1	41	1.31
32767446--32767630	79	2.3	82	83	7	229	24	27	22	24	2.00
32767428--32767630	40	5.1	40	81	8	227	24	27	22	25	2.00
32776125--32776416	85	3.4	85	100	0	584	32	22	16	28	1.95
32782521--32782557	18	2.2	18	85	9	51	37	16	8	37	1.78
32785872--32786135	40	6.6	40	92	1	370	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32786116--32786180	32	2.0	32	96	0	121	26	23	13	36	1.92
32787777--32788253	243	2.0	242	91	1	785	36	19	20	23	1.95
32795101--32795216	41	2.8	41	94	0	196	22	27	5	44	1.74
32799733--32799794	31	2.0	31	90	0	97	20	25	14	38	1.91
32807900--32808037	43	3.2	42	75	10	129	28	19	23	27	1.98
32813266--32813291	11	2.4	11	100	0	52	53	7	0	38	1.30
32819390--32819429	20	2.0	20	85	0	53	42	20	7	30	1.79
32827636--32827664	8	3.8	8	90	9	51	10	0	10	79	0.94
32828491--32828537	19	2.5	19	86	3	60	34	10	2	53	1.48
32828789--32828860	32	2.3	31	79	13	76	34	5	0	59	1.21
32828823--32828866	19	2.2	21	88	8	65	29	4	0	65	1.12
32829651--32830117	132	3.5	131	74	7	381	27	19	17	35	1.94
32830868--32832044	587	2.0	587	94	0	2086	30	18	21	29	1.97
32832225--32832270	19	2.4	19	85	7	58	19	23	13	43	1.86
32835766--32836093	47	7.1	47	87	5	454	31	9	30	28	1.89
32835773--32836042	134	2.0	135	94	1	470	32	8	29	30	1.86
32836212--32836291	38	2.1	38	84	6	101	26	18	28	26	1.98
32839288--32839322	3	11.7	3	87	0	52	74	0	25	0	0.82
32839287--32839324	18	2.1	18	95	0	67	76	0	23	0	0.79
32840419--32840542	64	1.9	64	87	6	180	33	15	13	37	1.87
32840564--32841365	131	6.1	131	92	1	1313	27	17	26	27	1.98
32840924--32841118	45	4.4	44	66	11	103	26	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32842668--32842714	19	2.5	19	86	3	60	34	10	2	53	1.48
32851004--32851041	19	2.0	20	85	15	53	39	23	0	36	1.55
32851270--32851440	93	1.8	93	93	0	297	28	28	21	21	1.98
32851265--32851437	46	3.7	46	79	10	208	29	27	20	21	1.98
32851860--32851919	30	2.0	30	86	0	84	33	25	5	36	1.78
32854541--32854581	21	2.0	21	85	4	57	19	2	29	48	1.61
32855974--32856847	47	18.6	47	93	0	1451	32	8	28	30	1.87
32855974--32856847	94	9.3	94	98	0	1676	32	8	28	30	1.87
32857222--32857276	15	3.8	15	80	7	60	3	21	1	72	1.09
32861397--32861489	47	2.0	47	100	0	186	32	21	16	30	1.95
32872306--32872388	38	2.1	37	82	12	96	66	1	20	12	1.31
32876730--32876802	29	2.5	29	97	0	137	32	9	12	45	1.74
32887658--32887702	20	2.2	20	84	7	56	53	11	4	31	1.56
32893389--32893438	21	2.5	20	84	9	59	70	4	18	8	1.28
32895427--32895452	12	2.2	12	100	0	52	69	0	7	23	1.14
32903345--32903376	16	1.9	16	93	6	55	81	3	15	0	0.82
32911357--32911534	27	6.6	27	84	3	205	29	28	15	26	1.96
32911378--32911533	82	1.9	81	88	3	233	29	28	15	26	1.96
32928425--32928457	15	2.2	15	94	0	57	75	0	15	9	1.03
32928419--32928459	15	2.9	14	82	7	55	68	2	17	12	1.31
32929685--32930144	219	2.1	219	94	0	803	31	18	20	28	1.97
32930149--32930319	50	3.4	50	74	1	146	31	22	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32930149--32930342	99	1.9	101	88	4	295	30	23	20	25	1.98
32930180--32930335	50	3.1	50	73	2	145	31	21	19	27	1.97
32930249--32930651	202	2.0	202	99	0	797	31	20	20	27	1.98
32932023--32932069	18	2.6	18	80	16	53	23	0	10	65	1.23
32951903--32951930	9	3.1	9	100	0	56	46	10	10	32	1.73
32951936--32951994	29	2.0	29	93	0	100	38	11	0	49	1.40
32967200--32967239	8	5.0	8	93	0	71	52	0	0	47	1.00
32967190--32967249	16	3.9	16	86	4	79	55	0	1	43	1.10
32985019--32985194	35	5.1	35	85	1	219	17	16	28	38	1.91
32985019--32985194	69	2.5	70	84	0	228	17	16	28	38	1.91
32985735--32985780	19	2.5	19	83	13	60	17	2	6	73	1.14
32987084--32987114	15	2.1	14	94	5	53	12	0	45	41	1.42
33008248--33008279	17	1.9	16	93	6	55	65	3	12	18	1.38
33011671--33011871	37	5.4	37	76	5	181	30	16	16	36	1.91
33011671--33011906	112	2.1	112	89	0	364	29	16	16	37	1.91
33011671--33011906	75	3.2	74	74	6	217	29	16	16	37	1.91
33011671--33011906	37	6.3	36	76	8	163	29	16	16	37	1.91
33013151--33013282	65	2.0	68	85	8	182	41	2	5	50	1.37
33017503--33017598	48	2.0	48	87	0	138	29	18	25	27	1.98
33020815--33020922	37	2.9	35	78	11	103	41	0	2	54	1.21
33020815--33020890	11	6.8	11	74	24	54	42	1	1	55	1.16
33020970--33021011	20	2.1	20	95	0	75	45	2	2	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33020865--33021037	79	2.2	77	80	13	183	41	1	4	52	1.32
33024738--33024769	14	2.3	14	94	0	55	71	6	3	18	1.20
33036377--33036426	24	2.1	24	81	7	57	58	8	2	32	1.39
33036398--33036433	10	3.6	10	92	7	56	61	2	0	36	1.11
33036377--33036444	20	3.1	22	77	16	61	58	5	1	33	1.31
33037424--33037526	16	6.2	16	67	13	57	51	3	2	41	1.35
33041062--33041211	74	2.0	75	97	1	284	17	23	9	50	1.75
33057461--33057512	25	2.1	25	100	0	104	28	15	23	32	1.95
33062126--33062237	21	5.3	21	70	0	71	16	24	17	41	1.89
33062094--33062232	42	3.3	42	81	0	143	16	21	17	44	1.86
33065465--33065523	25	2.5	24	86	10	77	11	30	20	37	1.89
33065650--33065701	25	2.1	25	89	7	79	19	21	23	36	1.95
33069497--33069536	20	2.0	20	95	0	71	22	30	30	17	1.97
33071356--33071380	13	1.9	13	100	0	50	8	0	24	68	1.16
33075138--33075188	13	3.9	13	73	0	57	31	7	23	37	1.83
33080134--33080176	18	2.4	18	88	7	61	25	46	13	13	1.81
33080156--33080294	72	1.9	72	95	0	251	31	35	12	20	1.90
33083614--33083757	72	2.0	72	98	0	279	30	10	5	53	1.58
33084021--33084110	42	2.2	41	80	7	94	20	27	28	23	1.99
33086852--33086902	26	2.0	26	96	0	93	29	13	11	45	1.79
33093657--33093695	18	2.3	18	86	8	55	43	12	5	38	1.65
33093853--33093883	15	2.1	15	100	0	62	22	32	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33098001--33098039	18	2.3	18	86	8	55	43	12	5	38	1.65
33098197--33098227	15	2.1	15	100	0	62	22	32	6	38	1.80
33100372--33100436	20	3.4	19	72	18	62	26	4	9	60	1.47
33100372--33100438	19	3.5	20	66	22	52	26	4	8	59	1.47
33109679--33109703	7	3.6	7	100	0	50	24	0	0	76	0.80
33109679--33109721	14	2.8	15	86	10	52	25	2	0	72	0.97
33111976--33112002	9	3.0	9	100	0	54	44	22	11	22	1.84
33112135--33112237	9	11.4	9	83	4	109	45	20	5	28	1.74
33112144--33112237	36	2.6	36	86	3	127	44	20	6	28	1.76
33115094--33115126	17	1.9	18	88	11	52	45	15	0	39	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141