genome.fa.s6.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  125  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37245963--37246091	23	5.7	22	74	14	102	56	2	7	33	1.41
37245937--37246096	46	3.5	45	78	10	139	56	3	7	33	1.43
37257244--37257287	8	5.8	8	86	10	56	6	40	0	52	1.28
37257244--37257287	15	2.9	15	80	13	54	6	40	0	52	1.28
37264399--37264435	9	3.8	10	89	10	51	5	2	8	83	0.88
37269339--37269513	27	6.4	27	82	3	181	27	14	28	29	1.96
37269340--37269490	55	2.8	55	84	3	198	27	15	29	27	1.96
37269340--37269495	82	1.9	81	85	3	215	26	15	29	28	1.96
37269336--37269513	82	2.2	81	80	3	205	27	15	28	29	1.96
37270072--37270128	29	2.0	29	96	0	105	21	14	17	47	1.82
37272198--37272462	129	2.1	129	100	0	530	23	24	21	30	1.99
37279124--37279153	15	2.1	14	93	6	51	30	16	13	40	1.87
37287018--37287073	13	4.3	13	83	0	67	28	8	12	50	1.70
37292525--37292551	10	2.7	10	100	0	54	40	25	0	33	1.56
37300183--37300229	15	3.4	14	77	22	55	61	8	6	23	1.48
37310524--37310576	25	2.1	25	89	0	79	41	20	15	22	1.89
37320249--37320338	39	2.3	39	88	1	137	30	15	32	22	1.95
37322915--37323013	39	2.5	39	78	0	108	40	21	9	29	1.84
37327694--37327866	73	2.4	72	75	7	163	35	20	17	27	1.95
37330723--37330773	11	4.7	10	81	11	57	39	47	1	11	1.52
37330725--37330773	22	2.2	22	88	0	71	38	46	2	12	1.53
37336120--37336338	39	5.5	39	83	1	240	33	15	30	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37336199--37336300	19	5.3	18	69	13	69	31	14	33	20	1.93
37336269--37336332	20	3.2	20	66	16	53	34	15	29	20	1.94
37350483--37350549	29	2.3	29	92	2	109	40	22	16	20	1.91
37363034--37363073	20	2.0	20	90	0	62	27	10	12	50	1.72
37363160--37363236	20	3.8	22	70	16	67	36	2	2	58	1.26
37363358--37363388	15	2.1	15	93	0	53	29	0	35	35	1.58
37364299--37364341	17	2.7	15	83	13	59	55	9	11	23	1.64
37366265--37366290	13	2.0	13	100	0	52	46	15	15	23	1.83
37372642--37372745	43	2.4	45	86	3	149	53	9	19	17	1.70
37375835--37376044	40	5.3	39	87	5	233	24	21	28	25	1.99
37375782--37376044	120	2.2	120	81	4	300	25	21	27	25	1.99
37375835--37376079	80	3.1	80	81	3	228	25	21	28	24	1.99
37383734--37383916	40	4.6	39	81	6	170	24	20	27	26	1.99
37383770--37383951	79	2.3	80	79	3	190	26	20	27	25	1.99
37387580--37387717	54	2.6	54	88	3	172	41	14	11	32	1.82
37387645--37387683	19	2.1	19	95	0	69	48	12	10	28	1.74
37387664--37387736	34	2.1	35	92	2	121	41	15	9	34	1.79
37387815--37387854	20	2.0	21	85	5	55	35	15	17	32	1.91
37389924--37390208	142	2.0	142	100	0	570	33	13	13	39	1.83
37392397--37392422	13	2.0	13	100	0	52	46	7	0	46	1.31
37392812--37392850	20	1.9	21	89	5	62	35	12	28	23	1.91
37394109--37394162	18	3.2	17	73	21	51	12	25	1	59	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37394131--37394182	18	2.9	18	80	8	61	15	19	5	59	1.56
37394187--37394285	6	16.0	6	72	8	74	5	20	2	72	1.13
37395231--37395280	13	3.8	13	79	10	57	12	6	4	78	1.08
37395231--37395280	26	1.9	26	91	0	82	12	6	4	78	1.08
37396396--37396421	13	2.0	13	100	0	52	46	7	0	46	1.31
37396811--37396849	20	1.9	21	89	5	62	35	12	28	23	1.91
37398104--37398157	18	3.2	17	73	21	51	12	25	1	59	1.44
37398126--37398177	18	2.9	18	80	8	61	15	19	5	59	1.56
37398182--37398280	6	16.0	6	70	8	65	5	20	3	71	1.18
37399234--37399279	10	4.7	10	86	5	67	13	4	0	82	0.81
37399233--37399279	19	2.3	21	82	10	62	12	4	0	82	0.80
37399235--37399282	9	5.1	9	82	9	60	16	4	0	79	0.89
37400392--37400417	13	2.0	13	100	0	52	46	7	0	46	1.31
37400807--37400845	20	1.9	21	89	5	62	35	12	28	23	1.91
37404525--37404575	25	2.0	25	96	0	93	39	9	21	29	1.85
37415860--37415902	16	2.7	16	85	0	59	32	11	27	27	1.92
37416830--37416923	46	2.0	46	95	0	170	34	21	20	24	1.97
37424664--37424707	22	2.0	21	82	4	52	27	20	11	40	1.86
37427097--37427160	24	2.5	25	77	10	67	34	7	34	23	1.84
37427889--37427958	20	3.5	20	78	3	79	25	30	15	28	1.96
37430424--37430546	6	20.0	6	66	8	59	70	3	17	8	1.25
37430427--37430504	36	2.2	36	85	0	102	71	3	15	8	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37430426--37430546	18	6.6	18	69	8	73	70	3	18	8	1.26
37432137--37432163	14	1.9	14	100	0	54	33	22	14	29	1.94
37433583--37433620	20	1.9	20	100	0	76	21	21	13	44	1.85
37433810--37433872	35	1.9	32	84	12	83	44	12	11	31	1.78
37434014--37434078	20	3.3	19	79	10	69	29	23	20	27	1.98
37435328--37435415	20	4.4	20	85	0	113	26	35	17	21	1.95
37435339--37435423	40	2.2	40	89	2	127	25	31	18	23	1.97
37437999--37438056	18	3.2	17	83	9	71	65	3	20	10	1.38
37438020--37438100	30	2.7	29	81	7	99	62	1	23	12	1.36
37438011--37438075	18	3.6	17	81	4	58	64	1	21	12	1.35
37439784--37439857	20	3.7	20	81	1	85	25	37	12	24	1.90
37441680--37441770	6	15.2	6	72	4	76	74	2	17	5	1.11
37441680--37441745	18	3.7	18	85	4	89	74	3	16	6	1.15
37441806--37441842	18	2.1	18	90	5	58	67	0	18	13	1.23
37443594--37443660	20	3.3	20	79	4	82	26	29	14	28	1.96
37446304--37446422	52	2.3	52	84	2	143	31	15	12	41	1.84
37446300--37446422	50	2.4	50	82	2	147	31	14	13	40	1.84
37449041--37449065	13	1.9	13	100	0	50	32	20	16	32	1.94
37449615--37449792	27	6.6	27	83	3	205	26	15	28	29	1.96
37449616--37449771	82	1.9	81	88	3	233	26	15	28	29	1.96
37449612--37449792	82	2.2	81	83	2	229	27	15	27	29	1.96
37462686--37462740	29	2.0	27	82	13	67	60	10	14	14	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37470828--37470869	12	3.7	12	81	18	54	11	16	2	69	1.29
37472013--37472064	12	4.4	12	75	4	52	19	5	1	73	1.14
37472022--37472065	23	1.9	23	85	0	61	18	9	2	70	1.24
37477179--37477236	30	2.0	29	83	10	73	25	32	13	27	1.94
37479556--37480497	470	2.0	470	99	0	1875	27	15	18	38	1.91
37481631--37481675	18	2.5	18	81	0	54	66	0	24	8	1.20
37485237--37485330	46	2.0	46	95	0	170	23	19	22	35	1.96
37490218--37490311	31	3.1	31	87	1	127	35	15	24	24	1.95
37490221--37490328	31	3.5	31	82	8	123	34	15	25	25	1.95
37490685--37490721	19	1.9	19	88	0	56	48	13	13	24	1.78
37490652--37490714	27	2.2	28	78	13	67	47	12	11	28	1.76
37490657--37490747	46	2.0	46	91	0	146	47	12	12	28	1.76
37495807--37495899	24	3.9	24	75	8	100	22	8	9	59	1.56
37495793--37495888	47	2.0	47	95	0	174	25	9	8	57	1.58
37498809--37498861	10	5.3	10	76	17	56	26	18	30	24	1.98
37498809--37498875	20	3.3	20	83	4	73	29	17	29	22	1.97
37503790--37503967	27	6.6	27	84	3	205	29	28	15	26	1.96
37503811--37503966	82	1.9	81	88	3	233	29	28	15	26	1.96
37511854--37512031	27	6.6	27	83	3	196	29	28	15	26	1.96
37511875--37512030	82	1.9	81	88	3	233	29	28	15	26	1.96
37514753--37514821	10	6.9	10	69	12	52	28	18	28	23	1.98
37514745--37514821	20	3.9	19	86	5	91	29	19	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37524115--37524143	13	2.2	13	100	0	58	44	13	20	20	1.85
37526483--37526523	19	2.3	17	87	8	55	46	2	7	43	1.44
37528802--37528916	24	4.6	24	73	19	76	70	2	20	6	1.23
37528805--37528916	6	18.0	6	66	17	50	70	2	19	7	1.23
37528801--37528916	25	4.5	25	76	13	76	70	2	19	6	1.22
37531778--37531812	18	2.1	17	89	10	54	31	0	14	54	1.40
37535919--37535988	28	2.6	28	86	4	99	25	8	12	52	1.67
37542002--37542032	15	2.1	15	93	0	53	35	9	19	35	1.85
37547721--37547759	10	3.7	11	86	10	55	30	12	25	30	1.93
37547721--37547759	21	1.9	20	89	5	60	30	12	25	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141