genome.fa.s6.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  41  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12382307--12382433	67	1.9	67	90	1	200	28	14	22	35	1.93
12382643--12382746	29	3.5	30	81	3	122	31	20	5	42	1.75
12382632--12382748	29	4.0	28	80	7	117	31	19	5	43	1.73
12383075--12383129	21	2.6	21	83	11	69	72	7	20	0	1.07
12383243--12383323	4	20.0	4	79	14	78	72	0	27	0	0.84
12383243--12383348	7	15.0	7	79	8	63	76	0	20	2	0.91
12383321--12383350	8	3.9	8	91	8	53	86	0	0	13	0.57
12383321--12383350	15	2.0	15	100	0	60	86	0	0	13	0.57
12383532--12383590	11	5.4	11	78	17	52	76	0	23	0	0.79
12383530--12383574	13	3.4	13	87	3	63	77	0	22	0	0.76
12383543--12383601	17	3.6	16	75	22	52	77	0	22	0	0.76
12383542--12383597	8	6.8	9	76	15	59	76	0	23	0	0.78
12383925--12383966	19	2.2	19	83	12	50	40	7	14	38	1.73
12384196--12384313	37	3.1	37	78	9	114	40	12	8	38	1.74
12384237--12384561	17	18.4	18	72	8	215	32	12	12	42	1.80
12384250--12384563	35	8.9	34	76	9	240	31	13	12	42	1.81
12384954--12384987	17	2.0	17	94	0	59	50	5	8	35	1.58
12393095--12393179	44	1.9	44	92	0	143	45	10	12	30	1.76
12394975--12395033	17	3.5	17	80	0	64	23	8	27	40	1.83
12396662--12396696	15	2.3	15	95	0	61	68	2	2	25	1.17
12396722--12396764	21	2.0	21	86	4	59	74	6	6	11	1.21
12396780--12396841	9	6.9	9	85	7	81	69	0	3	27	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12396780--12396841	6	10.3	6	84	6	81	69	0	3	27	1.04
12396801--12396841	3	13.7	3	100	0	82	68	0	0	31	0.90
12398508--12398679	44	3.9	44	80	3	157	25	24	22	27	2.00
12399861--12399959	51	1.9	51	93	0	171	15	25	18	41	1.89
12406908--12406955	24	2.0	24	83	0	60	10	22	20	45	1.81
12407098--12407144	19	2.5	20	86	6	62	44	8	19	27	1.79
12411195--12411351	41	3.8	41	89	4	219	24	28	19	28	1.99
12412046--12412556	78	6.6	78	95	0	891	42	14	4	38	1.65
12412046--12412556	233	2.2	234	94	1	900	42	14	4	38	1.65
12415749--12416625	291	3.0	291	99	0	1745	29	16	20	32	1.95
12417855--12417901	24	2.0	24	83	8	60	17	34	0	48	1.47
12426063--12426102	19	2.1	19	85	0	53	45	5	0	50	1.23
12428760--12428789	15	2.0	15	93	0	51	53	3	0	43	1.17
12433948--12434015	29	2.3	30	79	5	75	44	0	7	48	1.30
12440074--12440100	5	5.4	5	100	0	54	22	0	0	77	0.76
12444204--12444237	18	2.0	17	88	11	52	0	17	2	79	0.86
12451461--12451503	19	2.3	19	88	4	61	32	20	2	44	1.65
12454645--12454688	22	2.0	22	100	0	88	31	0	27	40	1.56
12460699--12460735	17	2.2	17	100	0	74	10	24	16	48	1.77
12469597--12469646	4	12.5	4	91	0	64	22	0	30	48	1.51
12475767--12475799	13	2.5	13	95	0	57	42	0	9	48	1.35
12475793--12475833	20	2.0	21	85	9	57	19	0	12	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12487523--12487592	35	2.0	35	97	0	131	32	28	7	31	1.84
12493421--12493506	43	2.0	44	90	2	138	46	11	23	18	1.82
12493462--12493698	53	4.5	53	81	7	277	40	18	21	19	1.92
12493462--12493698	26	8.9	27	82	6	272	40	18	21	19	1.92
12493459--12493689	80	2.9	79	83	5	272	41	18	22	18	1.91
12493881--12493931	26	2.0	26	92	0	84	17	19	23	39	1.92
12494029--12494121	33	3.0	32	81	12	113	18	22	26	32	1.97
12502941--12503123	61	3.0	61	67	12	169	44	3	5	46	1.42
12503095--12503129	18	2.0	17	88	5	52	42	0	2	54	1.15
12503362--12503397	16	2.2	16	90	0	54	25	27	5	41	1.77
12503809--12503849	6	6.8	6	100	0	82	51	48	0	0	1.00
12510001--12510037	18	2.1	18	100	0	74	54	5	5	35	1.47
12511362--12511387	9	2.9	9	100	0	52	0	0	7	92	0.39
12513548--12513588	20	2.1	19	86	13	57	68	26	2	2	1.15
12513924--12513956	13	2.3	15	90	10	52	15	3	0	81	0.80
12518516--12518553	19	2.0	19	85	10	51	36	10	5	47	1.61
12518797--12518883	20	4.1	21	80	10	88	35	25	22	16	1.94
12518797--12518904	23	5.0	22	82	10	98	37	25	21	16	1.94
12523142--12523178	19	1.9	19	100	0	74	5	10	45	37	1.62
12524934--12525042	41	2.7	41	94	0	191	22	29	20	27	1.98
12526868--12526892	13	1.9	13	100	0	50	40	24	4	32	1.73
12528703--12528766	32	2.0	32	96	0	119	20	12	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12533512--12533562	22	2.3	23	80	12	63	54	0	9	35	1.33
12533604--12533645	16	2.6	16	81	11	50	57	0	2	40	1.12
12538522--12538584	19	3.3	19	80	8	74	38	0	4	57	1.20
12538523--12538583	20	3.2	19	84	6	79	39	0	4	55	1.21
12544919--12544956	18	2.1	18	95	0	67	36	10	21	31	1.87
12545286--12545311	12	2.2	12	100	0	52	30	7	23	38	1.83
12554053--12554290	43	5.6	42	76	8	207	35	24	16	23	1.95
12554053--12554290	85	2.8	85	87	3	320	35	24	16	23	1.95
12554264--12554316	26	2.0	26	92	0	88	22	33	24	18	1.97
12556723--12556772	21	2.4	21	82	0	55	38	14	44	4	1.63
12557143--12557271	42	3.0	42	84	4	168	22	17	31	28	1.97
12557143--12557271	44	3.0	42	82	4	168	22	17	31	28	1.97
12567957--12567991	11	3.0	12	91	8	63	42	0	0	57	0.99
12568092--12568118	11	2.5	11	100	0	54	22	25	0	51	1.48
12596705--12596875	81	2.1	81	82	6	204	22	15	19	43	1.88
12596704--12596876	54	3.2	53	81	4	204	22	15	19	43	1.87
12596705--12596875	27	6.3	27	77	0	180	22	15	19	43	1.88
12599960--12600041	6	13.7	6	87	5	112	79	1	4	14	0.96
12601740--12601864	6	21.7	6	70	15	52	67	1	7	24	1.25
12601739--12601803	18	3.5	17	75	19	58	63	1	9	26	1.34
12601778--12601843	29	2.3	29	78	5	71	69	1	6	22	1.19
12612286--12612314	13	2.1	14	93	6	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12613072--12613275	107	1.9	107	90	0	327	33	15	19	31	1.93
12613964--12613998	15	2.4	15	90	4	54	57	0	8	34	1.29
12615680--12615808	40	3.1	40	69	20	129	25	21	22	30	1.99
12615647--12615868	84	2.6	84	95	0	390	26	19	24	29	1.99
12615687--12615823	44	3.2	44	73	8	165	27	20	23	28	1.99
12615575--12615823	128	1.9	125	79	9	270	24	21	22	31	1.98
12615720--12615852	44	3.1	44	69	20	145	26	22	22	28	1.99
12615962--12616181	88	2.5	87	91	2	341	20	21	26	30	1.98
12616036--12616174	44	3.2	43	66	15	122	22	19	28	30	1.98
12616005--12616142	44	3.2	43	66	15	120	21	23	25	28	1.99
12616153--12616205	23	2.3	23	96	0	97	32	13	32	22	1.92
12616191--12616503	44	7.2	45	63	17	140	24	23	22	28	1.99
12616177--12616516	87	3.9	87	88	0	527	24	23	22	30	1.99
12616176--12616516	174	2.0	174	93	0	583	24	23	22	29	1.99
12622709--12622743	15	2.4	15	90	4	54	57	0	8	34	1.29
12633483--12633509	12	2.2	12	100	0	54	59	25	7	7	1.51
12645945--12646132	50	3.8	49	83	4	198	38	20	12	29	1.89
12645958--12646149	25	7.7	25	69	15	128	36	21	13	29	1.91
12645951--12646147	100	2.0	100	84	2	261	37	20	12	29	1.90
12654878--12654942	29	2.2	28	82	15	78	44	4	3	47	1.39
12656433--12656482	17	2.7	19	82	14	61	52	0	12	36	1.39
12658259--12658295	18	2.1	18	94	0	65	29	5	13	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12658254--12658299	18	2.8	16	78	15	58	30	6	15	47	1.70
12662719--12662768	24	2.1	23	82	17	59	54	0	0	46	1.00
12662826--12662877	27	1.9	27	88	0	77	46	17	1	34	1.59
12663644--12663688	24	1.9	23	86	4	63	28	2	4	64	1.25
12664723--12664754	17	1.9	16	100	0	55	37	6	0	56	1.25
12664787--12665046	86	3.0	87	85	5	319	31	13	11	43	1.80
12665009--12665236	84	2.7	86	80	14	246	32	7	12	47	1.70
12669361--12669387	3	9.0	3	100	0	54	33	0	33	33	1.58
12670134--12670567	146	3.0	144	94	2	751	32	17	14	35	1.90
12704410--12704531	44	2.7	45	81	6	133	30	18	23	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141