genome.fa.s6.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  56  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16716262--16716324	11	5.7	12	75	17	57	47	1	26	23	1.61
16716264--16716329	22	2.9	22	78	13	71	48	1	28	21	1.59
16716262--16716325	33	1.9	33	93	6	112	48	1	26	23	1.60
16722575--16722647	31	2.4	30	77	8	78	49	1	9	39	1.44
16746186--16746256	17	4.1	18	82	10	85	57	0	0	42	0.98
16746182--16746256	5	15.6	5	74	22	72	57	0	0	42	0.98
16750388--16750421	17	2.0	17	100	0	68	35	17	11	35	1.87
16753757--16753851	2	47.5	2	93	0	163	51	47	1	0	1.07
16756466--16756516	26	2.0	26	84	7	68	43	7	0	49	1.32
16756432--16756507	41	1.9	38	84	7	98	35	7	0	56	1.28
16756694--16756771	35	2.2	34	82	8	95	33	8	6	51	1.59
16756692--16756774	37	2.3	35	79	4	94	33	8	6	51	1.57
16756952--16757012	11	5.9	11	75	21	60	47	1	0	50	1.10
16756999--16757058	21	2.8	22	85	10	79	43	1	1	53	1.20
16757287--16757325	8	4.9	8	100	0	78	23	0	0	76	0.78
16757321--16757371	12	3.9	13	76	16	52	21	9	0	68	1.18
16757666--16757809	74	1.9	74	88	0	216	29	20	15	34	1.94
16759664--16759775	53	2.1	54	86	5	156	35	1	8	53	1.43
16767357--16767417	29	2.0	30	84	6	79	39	8	13	39	1.74
16767937--16767983	3	15.7	3	90	0	76	61	2	2	34	1.20
16768651--16768725	28	2.7	28	95	4	134	42	12	0	45	1.41
16768767--16768842	27	2.8	27	84	4	91	26	26	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16768962--16769000	19	2.0	21	85	10	55	23	0	10	66	1.22
16769073--16769098	3	8.7	3	100	0	52	0	0	30	69	0.89
16769340--16769370	12	2.6	12	94	0	53	19	0	19	61	1.35
16769930--16769974	18	2.5	18	81	0	63	28	8	48	13	1.72
16771318--16771353	16	2.2	16	100	0	72	25	25	30	19	1.98
16772418--16772514	48	2.0	48	89	2	149	48	11	12	27	1.75
16773771--16774049	144	2.0	141	82	5	337	26	12	6	54	1.62
16774532--16774729	40	5.2	38	74	16	121	0	34	0	65	0.93
16774571--16774735	18	9.6	17	73	20	80	0	33	0	66	0.92
16774577--16774735	4	37.2	4	73	20	103	0	32	0	67	0.91
16774571--16774732	30	5.5	28	70	20	84	0	33	0	66	0.92
16774527--16774722	79	2.5	79	80	12	217	0	34	0	65	0.93
16774537--16774736	35	5.8	36	75	13	131	0	34	0	65	0.93
16774687--16774742	9	6.3	9	75	4	51	0	35	0	64	0.94
16774527--16774735	22	9.5	22	67	24	95	0	33	0	66	0.92
16774853--16774927	28	2.7	28	93	4	125	45	1	12	41	1.49
16775289--16775481	26	8.1	25	72	22	123	0	32	0	67	0.91
16775324--16775484	4	38.2	4	75	18	125	0	31	0	68	0.90
16775290--16775487	83	2.5	77	78	18	210	0	32	0	67	0.91
16775334--16775480	30	4.8	30	74	19	133	0	31	0	68	0.90
16775371--16775491	34	3.5	33	84	10	129	0	33	0	66	0.92
16775607--16775703	27	3.6	27	95	2	169	47	0	11	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16774526--16776063	782	2.0	747	90	7	2421	26	19	8	45	1.79
16780183--16780223	20	2.0	20	95	0	73	46	14	12	26	1.80
16783411--16783482	13	5.5	13	73	25	62	25	4	0	70	1.04
16783401--16783482	21	4.1	21	76	17	77	23	3	1	71	1.08
16783410--16783483	25	3.1	25	75	18	86	24	4	0	71	1.03
16783399--16783475	17	4.8	17	72	24	69	22	2	1	74	1.02
16784607--16784793	101	1.8	101	82	7	243	31	17	21	28	1.96
16784796--16784844	16	3.1	15	85	2	53	79	2	8	10	1.01
16786476--16786529	20	2.8	20	80	5	67	27	0	5	66	1.13
16789595--16790072	39	12.3	39	86	4	669	46	18	3	31	1.65
16805093--16805256	41	4.0	40	77	7	157	23	17	25	33	1.96
16805242--16805271	15	2.0	15	93	0	51	26	23	13	36	1.92
16810127--16810477	43	8.2	44	80	8	336	27	29	18	25	1.98
16810247--16810471	87	2.6	86	81	6	226	27	29	18	24	1.98
16810742--16810831	43	2.1	42	85	6	119	45	10	8	35	1.69
16814625--16814665	21	2.0	20	85	4	55	39	41	0	19	1.52
16814180--16814767	290	2.0	297	86	8	824	42	26	1	28	1.66
16815047--16815242	41	4.8	41	79	5	198	36	25	17	20	1.95
16825136--16825314	85	2.1	85	98	0	349	26	26	8	38	1.85
16829544--16829572	9	3.2	9	100	0	58	20	0	31	48	1.50
16841957--16842003	23	2.0	23	95	0	85	14	4	19	61	1.49
16843695--16843812	50	2.4	50	95	0	209	23	23	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16847134--16847207	36	2.1	36	84	0	94	39	16	21	22	1.92
16852962--16854281	498	2.7	497	92	0	2183	34	12	17	35	1.87
16855732--16855926	50	3.9	50	79	0	185	22	27	23	27	1.99
16864348--16864397	6	8.2	6	95	2	64	6	10	2	82	0.92
16864376--16864424	16	3.3	15	81	15	50	12	4	6	77	1.09
16864361--16864919	298	1.9	296	89	3	881	24	14	16	44	1.85
16866597--16866622	12	2.2	12	100	0	52	23	11	7	57	1.59
16874568--16874636	35	1.9	36	85	5	95	55	2	0	42	1.15
16874576--16874656	15	5.7	15	70	15	55	56	1	0	41	1.07
16874548--16874675	57	2.2	60	84	5	172	53	3	0	43	1.16
16874551--16874677	61	2.2	57	84	9	161	54	3	0	42	1.16
16874678--16874727	24	2.1	23	82	10	57	58	2	4	36	1.29
16880695--16880731	18	2.0	19	94	5	67	70	0	0	29	0.88
16886962--16887097	35	3.9	35	78	0	121	35	28	14	21	1.93
16901325--16901386	25	2.5	25	82	10	72	32	19	19	29	1.96
16913832--16913888	25	2.3	25	84	3	71	29	24	21	24	1.99
16924115--16924171	3	19.0	3	100	0	114	33	0	33	33	1.58
16924917--16925082	87	1.9	86	87	3	244	34	23	16	25	1.95
16928310--16928362	15	3.5	15	78	14	56	0	13	7	79	0.93
16931614--16931666	24	2.2	24	96	0	97	22	13	22	41	1.88
16936734--16936767	16	2.1	17	88	5	52	76	11	0	11	1.02
16942223--16942272	20	2.5	20	80	0	64	42	20	12	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16957829--16957890	24	2.6	25	78	14	67	17	29	19	33	1.95
16957953--16958010	26	2.2	26	87	0	80	15	24	22	37	1.93
16957963--16958073	25	4.4	25	77	5	89	17	26	23	33	1.96
16961990--16962031	17	2.4	17	80	15	50	71	0	0	28	0.86
16978043--16978078	18	2.0	18	88	0	54	58	13	2	25	1.49
16978403--16978545	71	2.0	71	95	0	259	32	9	6	51	1.60
16979054--16979105	22	2.5	20	85	11	77	50	15	11	23	1.76
16980056--16980085	11	2.6	12	89	10	53	56	0	0	43	0.99
16982329--16982421	31	3.0	31	100	0	186	41	16	9	32	1.80
16987963--16988077	44	2.7	43	91	2	194	9	13	11	65	1.48
16988589--16988682	31	3.0	31	96	3	179	42	15	9	31	1.80
17007000--17007029	9	3.2	9	95	4	51	76	0	13	10	1.01
17013574--17013618	22	2.0	24	82	8	58	31	24	6	37	1.81
17016066--17016099	17	2.0	18	88	11	54	41	0	17	41	1.50
17027385--17027666	140	2.0	140	99	0	555	20	34	21	23	1.97
17028813--17028904	25	3.7	24	81	5	103	26	22	22	28	1.99
17031633--17031662	15	1.9	16	93	6	53	43	0	0	56	0.99
17035647--17035690	20	2.2	20	83	0	52	29	13	27	29	1.94
17038594--17038630	18	2.2	18	90	9	60	5	21	2	70	1.20
17038566--17038655	41	2.2	40	86	11	121	5	20	3	71	1.21
17038600--17038659	19	3.0	19	81	16	68	5	21	1	71	1.14
17055110--17055166	25	2.3	25	87	0	78	28	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17072198--17072224	13	2.1	13	100	0	54	22	37	25	14	1.93
17075880--17075983	25	4.2	25	81	3	104	26	25	15	31	1.96
17075939--17076006	25	2.7	25	90	0	100	26	23	22	27	1.99
17080571--17080755	49	3.8	50	77	7	175	24	26	21	28	1.99
17085863--17086084	45	5.0	45	84	1	277	26	13	24	35	1.93
17085860--17086084	90	2.5	89	86	1	317	26	14	24	35	1.93
17092036--17092122	27	3.3	26	80	13	97	21	26	16	35	1.94
17096910--17096937	6	4.7	6	100	0	56	14	0	0	85	0.59
17097397--17097445	18	3.0	16	80	13	55	44	0	0	55	0.99
17102721--17102759	19	2.1	19	95	0	69	41	10	20	28	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141