genome.fa.s6.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  61  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18208455--18208508	16	3.4	16	94	0	90	31	35	0	33	1.58
18211839--18211905	29	2.3	29	82	5	82	40	19	16	23	1.91
18212764--18212830	29	2.3	29	82	5	82	40	19	16	23	1.91
18213307--18213645	168	2.0	168	90	1	536	36	4	9	48	1.57
18214519--18214568	27	2.0	26	88	11	77	52	0	2	46	1.12
18215173--18215206	11	3.1	11	86	0	50	38	2	0	58	1.13
18215505--18215559	29	2.0	29	89	7	87	29	9	10	50	1.68
18217569--18217608	16	2.5	16	87	0	53	52	5	5	37	1.45
18217583--18217620	16	2.4	16	86	8	51	57	2	0	39	1.12
18220448--18220516	16	4.2	16	92	3	111	28	0	33	37	1.58
18220448--18220516	33	2.1	32	91	2	111	28	0	33	37	1.58
18220497--18220586	45	2.0	45	84	2	119	27	6	27	37	1.82
18220507--18220610	44	2.4	43	80	12	117	32	6	26	33	1.83
18220732--18220786	15	3.4	16	80	16	53	54	1	0	43	1.10
18220738--18220786	16	2.9	18	80	20	61	55	0	0	44	0.99
18220639--18220966	156	2.1	156	96	0	602	42	3	6	46	1.46
18220908--18220942	18	2.0	17	88	5	52	54	0	0	45	0.99
18220644--18221080	156	3.1	136	78	14	466	44	3	5	46	1.43
18220834--18221046	67	3.2	66	64	19	159	46	3	3	46	1.37
18220846--18221124	137	2.0	135	81	6	321	45	5	3	45	1.43
18225688--18225739	24	2.2	24	89	0	77	36	3	9	50	1.54
18226324--18226366	23	1.9	23	90	4	70	37	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18227231--18227275	16	2.9	15	84	12	56	0	20	0	80	0.72
18227233--18227277	18	2.5	18	96	0	81	0	22	0	77	0.76
18228238--18228275	19	2.0	19	89	0	58	42	0	0	57	0.98
18229360--18229421	18	3.3	18	75	24	58	29	1	3	66	1.17
18233199--18233303	44	2.4	45	82	6	124	20	26	20	32	1.97
18233427--18233591	86	1.9	88	82	2	208	24	23	24	27	2.00
18234829--18234861	14	2.4	14	94	0	57	12	15	0	72	1.12
18235720--18235753	14	2.3	15	90	10	52	2	14	0	82	0.79
18235762--18235812	11	4.7	11	77	22	63	11	0	9	78	0.97
18235749--18235811	32	2.0	32	90	3	101	11	1	11	76	1.10
18235764--18235808	23	1.9	23	86	4	63	11	0	8	80	0.92
18238130--18238174	20	2.2	21	84	4	56	13	22	11	53	1.71
18242162--18242217	20	2.9	19	85	12	71	64	3	1	30	1.21
18242165--18242210	10	4.6	10	79	15	51	67	2	2	28	1.14
18244656--18244713	5	11.2	5	85	5	62	0	50	41	8	1.33
18244655--18244712	21	2.8	21	92	5	91	0	50	39	10	1.37
18246647--18246685	19	2.1	19	90	0	60	33	2	2	61	1.23
18246647--18246687	21	2.0	21	85	0	55	31	2	2	63	1.20
18247229--18247426	99	2.0	98	95	1	351	28	9	24	37	1.87
18247922--18248039	10	12.5	10	66	23	51	57	1	5	35	1.31
18249360--18249405	19	2.4	19	88	0	65	65	6	6	21	1.39
18249372--18249420	13	3.8	13	81	5	55	67	10	2	20	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18249523--18249555	16	2.1	16	100	0	66	69	12	0	18	1.18
18251020--18251234	102	2.0	103	84	6	279	31	14	14	39	1.87
18255723--18255775	21	2.5	21	82	11	56	32	9	0	58	1.30
18258723--18258889	43	3.9	43	81	3	165	28	25	21	24	1.99
18259269--18259340	21	3.4	21	96	0	126	1	48	18	31	1.56
18264809--18264929	9	13.9	9	73	9	99	32	1	21	44	1.62
18264802--18264885	25	3.3	25	81	5	105	29	0	21	48	1.50
18264809--18264925	61	1.9	61	84	3	155	31	1	21	45	1.62
18264963--18265100	20	7.3	20	66	18	89	39	5	7	47	1.55
18264931--18265100	57	3.0	56	90	5	263	40	5	8	46	1.56
18264931--18265087	55	2.8	55	92	3	235	40	5	7	46	1.54
18264944--18265145	112	1.8	112	82	4	264	41	4	9	44	1.57
18267532--18267592	7	8.7	7	74	0	50	45	31	1	21	1.61
18267525--18267564	21	1.9	21	89	0	62	47	25	0	27	1.52
18267532--18267592	28	2.2	28	85	5	79	45	31	1	21	1.61
18268241--18268421	93	1.9	93	86	2	256	22	17	20	39	1.92
18268131--18268535	207	2.0	206	86	1	560	23	18	20	37	1.94
18268330--18268705	114	3.3	114	87	1	506	22	19	19	38	1.94
18268333--18268746	227	1.8	227	80	6	507	23	19	19	37	1.94
18270718--18270770	23	2.3	23	84	12	65	37	1	0	60	1.08
18272957--18272999	16	2.5	17	77	7	52	30	9	9	51	1.65
18275068--18275106	19	2.1	19	85	9	53	76	7	0	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18275323--18275367	24	1.9	23	86	4	63	15	0	13	71	1.15
18275576--18275651	40	1.9	40	83	5	100	35	5	7	51	1.54
18279096--18279129	12	2.8	12	90	0	50	0	29	44	26	1.55
18280767--18281307	154	3.5	152	83	8	720	29	11	7	51	1.66
18281675--18281719	15	2.9	15	86	6	54	0	24	0	75	0.80
18287298--18287348	24	2.1	24	100	0	102	23	25	13	37	1.92
18287543--18287818	138	2.0	138	97	0	525	35	11	25	27	1.90
18289305--18289344	20	2.0	20	90	0	62	27	10	12	50	1.72
18289290--18289356	34	1.9	35	87	3	100	32	8	11	46	1.72
18290293--18290357	32	2.1	32	94	2	114	47	13	9	29	1.74
18295646--18295678	13	2.4	14	90	5	50	0	15	3	81	0.80
18297011--18297559	275	2.0	275	99	0	1080	34	18	16	30	1.93
18298932--18298970	19	2.1	19	85	0	51	12	10	20	56	1.65
18299111--18299162	26	2.1	24	85	7	68	28	3	25	42	1.72
18299333--18299366	17	1.9	18	88	5	52	47	0	0	52	1.00
18299545--18299580	18	2.0	18	88	0	54	36	8	8	47	1.64
18301241--18301311	19	3.9	17	83	10	70	32	0	4	63	1.14
18301268--18301317	10	5.2	10	77	15	52	30	0	2	68	1.01
18307097--18307129	17	1.9	17	88	11	50	45	0	0	54	0.99
18307308--18307343	18	2.0	18	88	0	54	36	8	8	47	1.64
18314060--18314166	41	2.6	41	89	0	160	37	23	17	21	1.94
18314282--18314462	64	2.9	63	89	8	262	41	17	8	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18314531--18314574	20	2.1	21	84	12	56	38	13	2	45	1.56
18315252--18315308	28	2.0	28	90	6	89	38	5	0	56	1.22
18326015--18326218	41	5.0	41	91	0	327	24	26	18	29	1.98
18326009--18326225	82	2.6	82	94	1	382	24	27	18	29	1.98
18329730--18329805	7	11.0	7	72	13	50	46	13	0	40	1.43
18329705--18329804	49	2.0	49	98	0	191	49	13	0	38	1.42
18329730--18329805	13	5.5	14	65	13	50	46	13	0	40	1.43
18334540--18334573	7	5.0	7	92	7	61	44	11	0	44	1.40
18338132--18338188	26	2.2	26	100	0	114	33	26	3	36	1.74
18339415--18339470	28	2.0	29	86	6	80	32	1	3	62	1.23
18341311--18341539	50	4.5	50	86	7	291	22	30	21	25	1.99
18347582--18347649	28	2.4	28	82	0	91	22	17	25	35	1.95
18347583--18347670	28	3.1	28	81	0	77	22	19	22	35	1.96
18348049--18348082	15	2.3	15	94	0	59	70	0	8	20	1.13
18350915--18350953	17	2.2	18	90	4	62	0	33	5	61	1.18
18350912--18350957	18	2.5	19	82	10	69	0	30	6	63	1.20
18358509--18358556	2	24.0	2	100	0	96	0	50	0	50	1.00
18360140--18360176	4	9.2	4	100	0	74	27	48	0	24	1.51
18360675--18360710	18	2.0	18	94	0	63	27	30	16	25	1.97
18361417--18361467	9	5.7	9	85	0	75	27	11	17	43	1.84
18366504--18366586	16	5.2	16	68	14	57	49	1	2	46	1.22
18368176--18368210	8	4.2	8	92	7	61	48	17	0	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18368175--18368208	17	2.0	17	100	0	68	47	17	0	35	1.48
18368946--18369175	69	3.2	69	72	10	212	29	9	3	58	1.44
18369503--18369550	25	1.9	25	82	0	60	10	22	16	50	1.76
18382409--18382504	21	4.5	21	77	11	81	45	29	1	23	1.60
18382411--18382491	22	3.7	21	72	16	60	49	28	1	20	1.57
18382411--18383409	43	23.5	44	71	15	470	45	31	0	22	1.57
18382452--18382547	50	1.9	50	82	4	122	47	32	1	18	1.56
18382559--18382628	36	1.9	36	82	0	86	47	35	1	15	1.55
18382584--18382650	22	3.1	22	78	2	64	46	35	0	17	1.49
18382555--18382705	58	2.6	58	88	4	227	47	35	0	16	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141