genome.fa.s6.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  22  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6808556--6808646	46	2.0	46	89	2	139	35	1	15	48	1.52
6808661--6808709	25	1.9	26	87	4	73	38	6	4	51	1.46
6810798--6811242	27	16.6	27	79	6	363	41	21	19	17	1.91
6810798--6811231	54	8.1	54	79	5	400	41	20	20	17	1.90
6810798--6811230	81	5.4	80	79	8	400	42	20	20	17	1.90
6815920--6815962	23	1.9	22	81	13	52	27	20	4	46	1.71
6818451--6818494	20	2.2	20	84	8	54	31	6	9	52	1.59
6818477--6818516	22	1.9	21	85	10	55	32	7	10	50	1.64
6825160--6825207	20	2.5	20	77	16	55	14	2	6	77	1.06
6831305--6831377	29	2.5	29	82	4	85	20	24	12	42	1.86
6834613--6834673	30	2.0	30	93	0	104	36	14	14	34	1.87
6839547--6839636	25	3.6	25	79	8	103	31	23	21	24	1.98
6839989--6840080	46	2.0	46	97	0	175	40	9	10	39	1.73
6841619--6841807	51	3.7	51	81	0	225	30	26	16	25	1.97
6841608--6841805	102	1.9	102	87	2	290	30	27	16	25	1.96
6852457--6852718	39	6.7	40	88	7	337	24	27	22	25	2.00
6853796--6853822	14	1.9	14	100	0	54	0	7	3	88	0.61
6854726--6854820	26	3.7	26	85	0	127	23	30	25	21	1.99
6857413--6857454	18	2.3	18	80	8	50	40	4	9	45	1.58
6861036--6861065	16	1.9	15	93	6	51	66	3	23	6	1.30
6865701--6865862	81	2.0	81	96	0	297	33	12	21	32	1.91
6870871--6870903	12	3.0	11	87	12	50	36	0	9	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6873498--6873541	15	2.9	15	80	12	54	45	0	0	54	0.99
6873490--6873563	25	3.0	24	76	13	62	44	5	0	50	1.25
6875240--6875299	23	2.6	23	81	0	75	43	28	13	15	1.84
6875240--6875311	23	3.1	22	75	11	65	44	26	13	15	1.84
6878020--6878135	50	2.3	50	80	0	133	26	23	27	22	1.99
6878405--6878443	12	3.2	12	92	0	60	56	5	17	20	1.60
6878705--6878812	53	2.0	53	94	0	189	31	6	22	39	1.79
6881102--6881320	72	3.1	72	64	18	197	38	7	5	47	1.56
6880990--6881693	139	5.1	136	92	1	1068	40	7	5	46	1.56
6880990--6881693	275	2.5	275	90	3	1092	40	7	5	46	1.56
6898485--6898601	27	4.3	27	79	6	121	44	19	16	19	1.87
6898485--6898603	54	2.2	54	89	3	177	43	19	16	20	1.88
6898754--6898830	26	3.0	26	82	0	100	14	20	25	38	1.91
6909715--6909761	24	2.0	24	86	0	67	31	19	25	23	1.98
6912583--6912998	27	15.4	27	80	7	400	42	20	17	20	1.90
6912583--6913000	54	7.7	53	82	6	457	41	20	17	20	1.90
6913010--6913064	25	2.2	25	81	12	60	27	5	23	43	1.75
6913203--6913257	26	2.1	26	82	0	65	23	18	20	38	1.93
6913369--6913474	28	3.8	29	82	5	119	26	22	22	28	1.99
6913355--6913475	56	2.2	56	83	4	154	25	22	21	30	1.99
6914760--6914789	16	1.9	15	93	6	51	46	13	10	30	1.75
6917425--6917522	46	2.1	46	92	0	160	32	14	14	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6921289--6921498	95	2.2	95	99	0	411	26	10	6	57	1.55
6921688--6921737	19	2.4	21	90	9	77	36	4	2	58	1.29
6930255--6930303	19	2.3	21	83	16	66	38	4	4	53	1.39
6930266--6930304	20	2.0	20	95	5	71	35	5	5	53	1.45
6932773--6932821	21	2.3	21	96	3	89	48	20	10	20	1.78
6940887--6940961	23	3.3	23	75	14	91	40	26	13	20	1.89
6941006--6941031	11	2.4	11	100	0	52	50	0	0	50	1.00
6947167--6947194	5	5.6	5	100	0	56	60	0	0	39	0.97
6948918--6948966	20	2.5	20	96	0	89	53	0	24	22	1.47
6961237--6961281	21	2.1	21	100	0	90	46	0	8	44	1.34
6962616--6962647	16	2.0	16	93	0	55	65	0	6	28	1.16
6964022--6964052	13	2.4	13	94	0	53	19	0	0	80	0.71
6967351--6967381	16	1.9	16	100	0	62	19	6	19	54	1.65
6969134--6969195	26	2.4	26	94	0	106	33	12	14	38	1.84
6972301--6972517	105	2.1	105	97	0	409	38	7	26	26	1.84
6973382--6973560	51	3.5	51	89	4	256	26	16	30	26	1.97
6978337--6978571	50	4.6	50	79	5	206	27	22	26	22	2.00
6978780--6978818	20	2.0	20	89	0	60	61	5	17	15	1.51
6981686--6981723	17	2.3	17	90	4	60	34	23	10	31	1.89
6986000--6986084	43	2.0	43	86	2	118	50	1	22	25	1.56
6989146--6989184	19	2.1	19	100	0	78	25	20	20	33	1.97
6992437--6992538	34	2.9	35	80	7	127	16	22	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6992378--6992616	74	3.3	73	74	8	211	21	20	25	33	1.97
6992437--6992561	35	3.6	34	77	7	117	17	21	28	32	1.96
6992437--6992569	69	1.9	69	80	6	153	18	21	28	32	1.96
7001654--7001691	14	2.7	15	84	12	53	76	2	0	21	0.91
7002665--7002697	13	2.6	13	90	4	50	18	3	27	51	1.60
7013814--7013909	48	2.0	48	97	0	183	25	28	22	23	2.00
7017703--7017745	18	2.4	18	96	3	79	37	4	18	39	1.72
7019344--7019381	18	2.1	18	100	0	76	68	15	10	5	1.36
7023950--7023987	19	2.0	19	94	0	67	47	2	5	44	1.39
7027342--7027366	9	2.8	9	100	0	50	64	0	24	12	1.27
7041382--7041447	25	2.6	25	87	0	96	25	22	24	27	2.00
7045822--7045858	18	2.0	19	89	5	58	45	27	10	16	1.80
7046021--7046063	14	2.9	15	82	3	52	20	2	11	65	1.36
7046097--7046121	13	1.9	13	100	0	50	20	0	24	56	1.43
7046940--7046996	26	2.2	26	96	0	105	29	17	17	35	1.93
7048143--7048175	8	4.1	8	100	0	66	24	0	0	75	0.80
7050115--7050172	30	2.0	30	86	10	84	37	13	18	29	1.90
7050512--7051363	75	11.4	75	100	0	1704	21	17	26	34	1.95
7051265--7051461	102	2.0	98	89	6	297	19	18	28	32	1.96
7058889--7058928	12	3.0	13	85	14	55	47	5	17	30	1.69
7062890--7062918	7	4.1	7	100	0	58	13	27	27	31	1.94
7066722--7067188	236	2.0	237	92	1	785	25	21	11	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7073500--7073542	20	2.2	20	86	0	59	34	4	11	48	1.60
7075671--7075729	12	4.8	12	77	6	64	52	1	32	13	1.50
7075671--7075729	24	2.4	25	80	5	75	52	1	32	13	1.50
7079799--7079991	57	3.3	57	79	13	223	27	19	6	47	1.73
7079917--7079942	6	4.3	6	100	0	52	15	15	0	69	1.20
7088205--7088352	54	2.6	54	84	10	181	26	14	13	45	1.81
7088569--7088615	18	2.6	18	80	10	51	10	6	8	74	1.22
7088813--7088849	19	2.0	19	89	5	58	27	18	0	54	1.44
7090464--7090503	20	2.0	20	100	0	80	35	5	10	50	1.58
7091053--7091099	24	2.0	24	86	0	67	46	4	4	44	1.42
7093627--7093678	23	2.3	23	89	0	77	38	1	11	48	1.51
7093636--7093715	13	6.6	13	76	16	73	37	2	13	46	1.57
7093644--7093714	36	2.0	36	94	0	124	36	1	15	46	1.55
7100979--7101022	13	3.6	13	82	17	67	38	0	13	47	1.43
7100972--7101028	23	2.4	23	82	2	78	40	0	14	45	1.44
7104756--7104840	42	2.0	42	100	0	170	32	21	9	36	1.85
7113041--7113224	38	4.7	37	71	17	140	44	1	3	51	1.27
7113111--7113269	26	6.5	26	64	21	83	42	0	3	53	1.21
7113023--7113331	120	2.6	120	97	0	573	42	0	4	51	1.28
7113579--7113620	15	2.7	16	82	14	52	45	0	2	52	1.13
7113570--7113611	15	2.9	15	82	10	52	47	0	0	52	1.00
7113473--7113721	107	2.2	118	81	13	308	43	2	4	49	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7113514--7113731	107	2.0	108	97	0	411	43	1	5	49	1.36
7113686--7113727	15	2.7	16	82	14	52	45	0	2	52	1.13
7113677--7113718	15	2.9	15	82	10	52	47	0	0	52	1.00
7113661--7113977	157	2.0	157	94	1	555	47	5	3	43	1.41
7114100--7114167	16	4.2	16	96	0	127	38	35	0	26	1.57
7116104--7116137	18	1.9	17	88	5	50	67	0	0	32	0.91
7116402--7116429	5	5.6	5	100	0	56	39	0	17	42	1.50
7116403--7116446	15	2.9	15	86	0	52	50	0	11	38	1.39
7116402--7116450	10	4.9	10	87	0	53	48	0	10	40	1.37
7116558--7116596	19	2.1	19	85	9	53	43	7	0	48	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141