genome.fa.s6.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  19  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5751896--5751958	23	2.7	23	90	2	90	36	31	6	25	1.81
5752995--5753019	12	2.1	12	100	0	50	32	8	16	44	1.76
5753461--5753601	44	3.2	44	64	7	122	34	17	15	32	1.91
5753444--5753638	90	2.2	90	100	0	390	33	15	14	36	1.88
5753476--5753616	44	3.2	44	64	7	122	36	15	14	32	1.89
5754552--5754639	39	2.3	39	80	7	99	67	2	20	10	1.32
5757018--5757067	26	1.9	26	83	0	64	70	8	4	18	1.28
5759535--5759584	18	2.5	20	87	9	68	74	2	20	4	1.08
5764280--5764310	12	2.6	12	94	0	53	67	0	9	22	1.19
5765533--5765571	16	2.4	16	95	0	69	61	2	28	7	1.37
5767310--5767478	64	2.6	64	100	0	338	30	15	14	39	1.88
5771886--5771982	50	1.9	50	87	0	140	40	11	25	22	1.87
5779045--5779253	105	2.0	105	98	0	400	42	13	19	24	1.87
5784113--5784150	19	2.0	20	94	5	69	36	10	34	18	1.85
5787797--5787948	27	5.6	27	93	3	241	30	28	13	26	1.94
5787797--5787948	55	2.8	55	94	0	259	30	28	13	26	1.94
5790525--5790624	51	1.9	52	91	2	166	59	9	16	16	1.61
5791728--5791753	9	2.9	9	100	0	52	23	30	23	23	1.99
5792077--5792367	145	2.0	145	95	0	519	40	16	12	30	1.85
5800354--5800484	65	2.0	65	93	0	226	42	8	22	26	1.81
5818520--5818587	29	2.3	29	80	9	77	27	27	13	30	1.94
5818409--5818832	174	2.4	174	98	0	803	31	23	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5818694--5818761	29	2.3	29	82	5	84	27	29	13	29	1.94
5822790--5822873	43	2.0	43	86	9	118	22	15	28	33	1.95
5822798--5822923	43	2.9	43	78	10	114	23	17	26	32	1.96
5826110--5826178	29	2.4	29	87	2	95	26	17	30	26	1.97
5826127--5826190	28	2.2	29	83	2	76	28	17	26	28	1.97
5827693--5827881	95	2.0	95	98	0	369	39	23	10	26	1.87
5828095--5828437	40	8.6	40	91	2	494	26	27	20	25	1.99
5831586--5831643	29	2.0	29	96	0	107	37	22	0	39	1.54
5832731--5832879	43	3.5	42	71	21	116	26	25	21	26	1.99
5833934--5833999	19	3.7	18	67	30	52	51	16	0	31	1.45
5836095--5836135	21	2.0	21	90	4	66	51	21	0	26	1.48
5842417--5842468	18	2.9	18	88	0	77	46	13	21	19	1.84
5845961--5846302	38	8.0	38	68	22	173	30	14	24	30	1.95
5845991--5846262	48	5.9	48	80	9	325	30	14	23	31	1.94
5846039--5846200	85	1.9	86	89	1	254	30	13	24	31	1.94
5845961--5846300	133	2.6	133	91	0	545	30	14	24	30	1.95
5848394--5848437	22	2.0	22	86	0	61	38	0	4	56	1.20
5856638--5856695	23	2.5	23	75	5	55	68	1	18	10	1.26
5858139--5858261	55	2.2	56	88	2	176	26	12	28	33	1.92
5858139--5858261	28	4.4	28	90	2	176	26	12	28	33	1.92
5858164--5858274	28	4.0	27	90	3	116	28	11	26	33	1.91
5861108--5861137	15	2.0	15	100	0	60	46	6	20	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5861331--5861376	16	2.8	17	68	18	51	69	2	10	17	1.27
5863312--5863361	25	2.0	25	96	0	91	32	18	24	26	1.97
5868205--5868236	16	2.0	16	93	0	55	21	34	6	37	1.79
5868899--5869002	43	2.4	43	88	0	154	28	14	22	34	1.93
5868899--5869045	43	3.4	43	81	5	120	29	14	23	31	1.95
5869353--5869406	26	2.1	25	90	6	90	9	20	11	57	1.60
5871417--5871490	37	2.0	37	91	0	121	36	21	13	28	1.91
5872397--5872602	27	7.6	27	68	8	132	38	22	8	30	1.84
5872391--5872567	54	3.3	54	82	3	221	39	23	8	28	1.84
5872594--5872701	27	4.0	27	87	0	144	33	18	22	25	1.97
5872585--5872701	54	2.2	54	85	0	162	35	17	20	27	1.95
5872681--5872744	27	2.4	27	74	10	67	17	18	26	37	1.93
5873216--5873277	22	2.8	22	78	9	72	17	22	25	33	1.96
5873512--5873599	25	3.6	25	87	3	133	20	21	14	43	1.88
5873587--5873620	18	1.9	18	88	5	52	23	11	11	52	1.70
5873919--5873990	35	2.1	35	91	0	117	26	4	13	55	1.56
5883257--5883308	27	1.9	27	88	0	77	30	13	19	36	1.90
5887779--5888028	47	5.4	47	85	4	330	34	7	30	27	1.85
5887788--5888028	89	2.6	90	86	5	315	33	7	31	27	1.85
5900947--5901094	40	3.7	40	91	0	244	24	27	22	25	2.00
5901708--5901809	51	2.0	51	96	0	186	32	23	13	30	1.93
5908695--5909631	40	23.5	40	97	0	1691	26	27	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5915377--5915428	23	2.3	23	84	15	65	21	7	3	67	1.32
5916355--5916381	13	2.1	13	100	0	54	33	22	7	37	1.82
5925495--5925596	27	3.7	27	82	2	123	42	21	7	28	1.81
5925578--5925799	27	8.2	27	83	2	293	36	17	19	26	1.93
5925578--5925828	54	4.6	54	84	1	279	35	17	20	25	1.95
5925578--5925802	81	2.8	80	88	1	333	36	17	19	26	1.94
5931310--5931378	29	2.4	29	87	4	95	27	15	30	26	1.96
5939468--5939540	29	2.5	29	88	4	103	26	16	31	26	1.96
5941736--5941786	20	2.7	19	82	14	54	41	0	21	37	1.54
5948396--5948438	16	2.7	15	86	13	52	37	16	11	34	1.85
5951856--5952034	27	6.6	27	92	1	268	26	14	28	30	1.95
5951856--5952034	82	2.2	82	88	2	270	26	14	28	30	1.95
5960081--5960257	27	6.5	27	81	3	167	25	15	29	28	1.96
5960081--5960236	82	1.9	81	82	3	197	26	16	30	27	1.96
5960081--5960257	54	3.3	54	80	4	187	25	15	29	28	1.96
5960077--5960257	82	2.2	81	79	2	193	26	16	29	28	1.96
5967240--5967338	44	2.2	45	85	1	137	23	18	24	34	1.96
5967575--5967600	13	2.0	13	100	0	52	23	15	30	30	1.95
5996556--5996741	50	3.7	50	78	6	164	28	23	25	23	1.99
5996943--5996981	12	3.2	12	85	0	51	56	5	20	17	1.60
6004702--6004737	13	2.8	13	86	0	54	25	44	19	11	1.83
6016488--6016517	13	2.3	13	100	0	60	40	43	0	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6016657--6016742	9	9.4	9	85	7	93	23	11	24	40	1.87
6019880--6019945	30	2.3	27	78	12	69	60	3	1	34	1.21
6019913--6019961	17	2.7	19	81	12	75	57	8	0	34	1.29
6020009--6020068	10	5.9	10	81	11	77	53	0	0	46	1.00
6020292--6020410	20	5.8	20	67	7	78	33	0	4	61	1.21
6020287--6020405	41	3.0	40	78	15	120	33	1	3	61	1.22
6020347--6020414	30	2.3	28	79	18	75	32	1	2	63	1.18
6022181--6022210	15	2.0	15	100	0	60	40	6	13	40	1.71
6035418--6035512	47	2.1	46	96	4	174	49	13	4	32	1.61
6036567--6036717	37	4.0	37	78	9	162	19	20	25	33	1.97
6036566--6036705	19	7.5	18	72	10	102	20	21	25	32	1.97
6039912--6040062	4	37.8	4	97	0	284	50	23	0	25	1.50
6044335--6044363	14	2.0	15	93	6	51	41	13	20	24	1.89
6045731--6045763	13	2.6	13	90	4	50	69	3	0	27	1.03
6056068--6056093	6	4.3	6	100	0	52	69	15	15	0	1.20
6060089--6060133	22	2.0	22	87	8	65	13	17	6	62	1.52
6063369--6063413	20	2.4	19	82	10	58	53	4	2	40	1.33
6070382--6070439	26	2.2	27	79	11	66	58	1	0	39	1.08
6070423--6070492	37	1.9	35	83	11	88	52	2	4	40	1.36
6071476--6071526	26	2.0	26	96	0	93	41	21	19	17	1.91
6071700--6071841	27	5.4	27	83	3	164	16	18	21	42	1.88
6071715--6071840	53	2.4	54	87	4	175	16	18	23	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6079250--6079419	27	6.3	26	81	6	187	17	15	22	44	1.86
6079250--6079419	81	2.1	80	84	5	227	17	15	22	44	1.86
6081185--6081235	24	2.1	25	85	3	68	41	0	1	56	1.10
6083896--6084023	63	2.0	63	93	0	220	41	0	27	31	1.56
6089703--6089759	26	2.2	26	87	3	78	52	10	12	24	1.70
6101624--6101684	27	2.3	26	78	16	70	52	8	8	31	1.60
6105112--6105155	22	1.9	23	86	9	63	20	36	2	40	1.65
6106355--6106384	3	10.0	3	100	0	60	33	0	0	66	0.92
6108815--6109060	43	5.7	43	89	0	348	26	19	29	24	1.98
6108817--6109060	129	1.9	129	90	0	389	26	19	29	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141