genome.fa.s6.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  18  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5374440--5374642	27	7.5	27	77	5	178	22	15	19	42	1.89
5374436--5374642	54	3.8	54	79	5	204	21	15	20	41	1.90
5374461--5374642	81	2.2	81	85	5	235	22	15	20	40	1.91
5376521--5376585	20	3.2	20	75	12	53	10	30	15	43	1.81
5390823--5390858	13	2.8	13	100	0	72	72	0	5	22	1.05
5391851--5391882	15	2.1	16	94	5	57	71	0	21	6	1.07
5399186--5399258	29	2.5	29	97	0	137	45	12	9	32	1.74
5403908--5403979	28	2.5	29	90	2	119	47	9	9	33	1.69
5405034--5405147	40	2.9	40	85	1	149	32	14	31	21	1.93
5419857--5419896	3	13.3	3	83	0	53	65	0	27	7	1.20
5443364--5443547	41	4.5	41	77	4	174	20	14	29	36	1.91
5443386--5443535	81	1.9	81	84	2	203	22	15	26	35	1.94
5443522--5443572	26	2.0	26	84	0	66	7	9	39	43	1.67
5443364--5443737	189	2.0	190	83	0	471	20	16	28	34	1.94
5443548--5443793	41	6.0	41	88	0	303	21	19	28	30	1.97
5443400--5443695	149	2.0	148	85	0	403	19	16	28	35	1.93
5444141--5444175	15	2.4	14	86	9	52	22	0	37	40	1.55
5444186--5444222	8	5.0	7	93	6	56	27	0	32	40	1.57
5444136--5444209	28	2.6	27	73	14	69	24	0	35	40	1.55
5444170--5444262	21	4.3	23	75	14	81	26	1	35	36	1.64
5444438--5444484	14	3.3	15	88	8	71	25	0	34	40	1.56
5444431--5444512	21	3.8	22	71	7	62	25	0	34	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5444503--5444543	21	2.0	21	90	0	64	26	2	43	26	1.67
5444076--5444659	295	2.0	295	87	5	851	30	2	25	42	1.68
5444860--5444899	21	1.9	21	89	0	62	20	0	37	42	1.52
5444848--5445008	7	22.7	7	70	13	53	22	0	37	38	1.59
5453752--5453802	15	3.5	15	78	10	61	3	21	1	72	1.11
5453756--5453798	14	2.9	15	82	6	52	4	23	2	69	1.18
5453762--5453806	14	3.1	14	80	3	54	2	24	2	71	1.09
5455888--5455919	13	2.6	12	95	5	55	12	6	3	78	1.06
5462900--5463010	50	2.2	50	80	0	132	27	22	29	20	1.99
5467082--5467346	40	6.7	40	85	5	286	26	27	21	24	1.99
5467049--5467346	80	3.7	80	79	9	263	25	27	21	25	1.99
5467278--5467355	40	1.9	41	82	10	97	26	28	20	24	1.99
5473614--5473799	50	3.7	50	77	3	171	29	22	25	23	1.99
5477357--5477399	22	2.0	22	90	0	68	25	11	4	58	1.52
5477405--5477452	25	2.0	24	83	4	60	39	0	2	58	1.10
5480789--5480825	18	2.0	19	89	5	58	8	40	0	51	1.32
5483203--5483251	21	2.3	21	100	0	98	46	26	14	12	1.79
5485447--5485519	36	2.0	36	100	0	146	26	19	16	38	1.92
5487662--5487731	33	2.1	33	82	10	81	55	2	7	34	1.42
5488925--5488974	26	1.9	26	91	0	82	14	4	38	44	1.63
5489488--5490334	44	19.6	43	68	12	281	28	26	18	27	1.98
5489348--5489815	217	2.2	213	91	3	733	27	25	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5489656--5490332	129	5.2	129	73	12	548	29	26	18	25	1.98
5489834--5490115	85	3.3	86	69	11	245	29	25	18	26	1.98
5489964--5490382	218	1.9	218	93	1	716	28	26	18	26	1.98
5490374--5490815	129	3.4	129	91	0	706	25	24	19	30	1.98
5492058--5492117	22	2.7	22	85	10	77	16	13	0	70	1.18
5492058--5492118	14	4.1	15	78	19	58	16	13	0	70	1.17
5492058--5492119	30	2.1	30	84	6	81	16	12	0	70	1.16
5492077--5492119	15	2.9	15	86	10	54	16	11	0	72	1.13
5492069--5492119	8	6.6	8	80	17	54	15	11	0	72	1.12
5492069--5492120	16	3.3	16	84	10	72	15	11	0	73	1.11
5492967--5493005	15	2.7	14	84	7	51	0	25	0	74	0.82
5497599--5497668	33	2.1	33	82	10	81	55	2	7	34	1.42
5508720--5508949	50	4.7	49	82	6	263	19	32	20	27	1.97
5508970--5509064	44	2.2	44	94	0	163	24	21	12	42	1.87
5516961--5517006	22	2.1	21	84	4	56	34	4	13	47	1.62
5516911--5517428	259	2.0	259	90	3	826	36	10	15	38	1.82
5520354--5520401	11	4.4	11	94	0	78	22	8	39	29	1.83
5521887--5522023	50	2.7	50	83	5	170	31	27	14	26	1.95
5521938--5521970	14	2.5	13	90	9	50	39	27	9	24	1.85
5527600--5527675	23	3.3	23	92	0	125	28	26	22	22	1.99
5528005--5528080	23	3.3	23	92	0	125	28	26	22	22	1.99
5527515--5528324	405	2.0	405	100	0	1620	30	24	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5528304--5528344	18	2.3	18	88	12	59	43	19	0	36	1.51
5539168--5539222	21	2.6	21	85	5	67	10	12	34	41	1.78
5547436--5547714	41	6.7	41	82	4	290	22	17	25	34	1.96
5547476--5547714	84	2.8	84	98	0	451	21	17	25	35	1.95
5551619--5551724	41	2.6	40	86	3	140	24	16	26	32	1.97
5551659--5552319	84	7.8	84	82	5	814	22	15	25	35	1.94
5560583--5560642	31	1.9	32	86	6	88	11	18	30	40	1.86
5564334--5564369	13	2.8	13	95	0	63	22	5	11	61	1.50
5568203--5568352	33	4.5	33	69	0	111	14	22	16	46	1.83
5571009--5571437	79	5.4	79	87	3	585	17	31	17	33	1.93
5571009--5571422	20	20.9	20	64	15	153	17	30	17	34	1.93
5570988--5571437	119	3.8	119	81	5	550	17	30	17	34	1.93
5570988--5571437	40	11.4	40	83	5	538	17	30	17	34	1.93
5576301--5576433	50	2.7	50	80	0	149	22	29	21	26	1.99
5581800--5581985	50	3.6	50	80	7	176	26	22	27	23	1.99
5583707--5583749	22	2.0	21	95	4	77	51	13	20	13	1.76
5593178--5593232	15	3.8	15	85	2	69	1	21	1	74	1.01
5604699--5604744	20	2.3	20	92	0	74	34	15	26	23	1.94
5604708--5604762	20	2.8	20	83	5	58	34	18	27	20	1.95
5606402--5606448	24	2.0	24	91	0	76	27	36	8	27	1.86
5614800--5614838	18	2.2	18	90	9	62	71	2	20	5	1.17
5616607--5616678	33	2.1	34	89	2	110	38	6	12	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5623000--5623039	15	2.7	15	96	0	71	7	10	17	65	1.46
5623740--5623787	21	2.4	21	86	10	66	72	6	16	4	1.20
5632330--5632385	30	1.9	28	82	13	69	60	10	14	14	1.58
5638167--5638214	25	1.9	25	91	8	80	43	12	22	20	1.86
5644964--5645012	6	8.0	6	78	13	55	4	18	0	77	0.92
5645187--5645225	16	2.3	16	86	8	51	20	15	25	38	1.92
5646646--5646694	20	2.5	20	82	0	71	26	32	14	26	1.94
5649773--5650238	233	2.0	233	96	0	869	38	19	15	25	1.92
5652251--5652294	22	1.9	24	81	9	56	29	13	13	43	1.83
5657700--5658019	160	2.0	160	97	0	604	35	25	18	20	1.95
5658249--5658743	248	2.0	248	99	0	974	23	14	18	42	1.88
5666248--5666293	23	2.0	24	86	4	67	8	21	2	67	1.29
5670337--5670409	37	2.0	37	81	7	87	54	23	6	15	1.64
5673595--5673778	101	1.8	100	84	4	253	32	27	16	24	1.96
5673588--5673782	50	3.9	49	75	5	176	31	27	16	24	1.96
5674928--5675041	60	1.9	60	96	0	210	45	0	16	37	1.48
5679544--5679590	6	7.8	6	81	9	60	0	19	2	78	0.85
5679533--5679590	18	3.4	17	80	17	66	0	20	1	77	0.86
5682235--5682419	79	2.3	82	81	7	211	24	27	23	24	2.00
5682216--5682419	40	5.1	40	78	8	211	24	26	23	25	2.00
5682741--5682975	118	2.0	118	96	0	434	36	21	14	27	1.93
5703832--5703876	24	1.9	24	90	4	74	35	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5705806--5705849	9	5.1	9	89	10	74	56	11	0	31	1.35
5705815--5705852	16	2.4	16	95	0	67	55	10	0	34	1.34
5705945--5705999	23	2.4	23	81	3	67	43	1	1	52	1.22
5711176--5711224	20	2.5	19	83	9	62	48	16	10	24	1.76
5726532--5726582	23	2.2	23	92	0	84	31	9	17	41	1.82
5728426--5728474	20	2.5	19	83	9	62	48	14	12	24	1.77
5732126--5732334	38	5.5	38	85	4	278	36	25	20	18	1.95
5733301--5733340	16	2.5	16	87	0	53	17	2	2	77	0.99
5739600--5739642	22	2.0	21	86	4	59	20	13	6	58	1.59
5741092--5741137	22	2.1	22	100	0	92	36	4	17	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141