Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  141  of  141  ( 16820 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42755833--42755926
31
2.9
33
83
12
124
12
24
6
56
1.60
42755859--42755913
16
3.5
16
71
14
60
10
18
5
65
1.42
42755923--42756009
27
3.1
27
80
9
97
11
18
1
68
1.25
42755941--42755983
17
2.4
18
84
7
61
13
18
0
67
1.23
42755944--42756009
29
2.4
27
87
10
89
12
18
0
69
1.18
42755944--42756042
12
8.6
12
68
20
59
12
20
1
66
1.29
42755966--42756052
24
3.5
24
71
12
68
10
24
1
64
1.32
42757739--42757796
10
5.7
10
76
11
64
29
27
13
29
1.94
42757739--42757799
20
3.0
20
83
9
79
27
26
13
32
1.93
42759141--42759189
14
3.4
14
76
13
55
71
4
6
18
1.23
42762236--42762293
10
5.7
10
76
11
64
29
27
13
29
1.94
42762236--42762296
20
3.0
20
83
9
79
27
26
13
32
1.93
42764406--42764474
29
2.4
29
92
4
113
46
11
10
31
1.74
42769476--42769516
21
2.0
21
85
9
57
60
2
34
2
1.23
42784250--42784304
17
3.2
17
82
5
65
9
10
5
74
1.21
42786520--42786553
12
2.8
12
95
4
59
11
8
0
79
0.94
42786519--42786554
13
2.8
13
87
12
56
11
8
0
80
0.90
42791100--42791154
17
3.2
17
82
5
65
9
10
5
74
1.21
42797655--42797721
21
3.1
21
82
4
71
34
32
2
29
1.73
42798020--42798054
13
2.6
13
90
4
52
77
2
8
11
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141

The End!