genome.fa.s6.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  12  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3292122--3292245	43	2.9	43	77	13	121	31	25	18	25	1.98
3292895--3292946	23	2.3	23	100	0	104	46	21	7	25	1.77
3303993--3304017	6	4.2	6	100	0	50	84	0	0	16	0.63
3316878--3316976	20	4.8	20	85	3	108	40	24	26	9	1.84
3316888--3316969	41	2.0	41	85	0	110	40	25	25	8	1.84
3324631--3324735	41	2.7	38	81	8	129	36	4	8	50	1.54
3324631--3324756	41	3.2	39	75	13	114	36	4	8	50	1.55
3334830--3334918	45	2.0	44	86	2	124	32	5	28	33	1.80
3339887--3339923	6	6.2	6	100	0	74	32	16	35	16	1.91
3340559--3340593	18	2.0	17	88	5	52	45	0	0	54	0.99
3340753--3340847	45	2.1	44	88	5	138	34	27	5	32	1.79
3340826--3340895	16	4.4	16	96	0	104	32	35	0	31	1.58
3350762--3350907	73	2.0	74	91	1	240	56	2	10	30	1.46
3350944--3350988	23	1.9	24	86	4	65	75	2	8	13	1.13
3354795--3354838	23	1.9	23	85	0	61	27	4	9	59	1.48
3356400--3356452	21	2.5	22	82	14	67	5	5	20	67	1.32
3358330--3358375	24	1.9	24	100	0	92	21	13	23	41	1.88
3366892--3367090	74	2.7	74	88	1	283	24	20	22	32	1.98
3366936--3367049	35	3.1	35	65	14	86	27	20	21	30	1.98
3368164--3368218	25	2.2	25	90	6	85	23	27	32	16	1.96
3395617--3395660	6	7.3	6	100	0	88	18	0	50	31	1.47
3397036--3397088	22	2.5	21	83	16	74	20	5	0	73	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3397036--3397088	21	2.6	21	83	16	67	20	5	0	73	1.03
3399196--3399246	21	2.4	21	80	6	59	23	31	15	29	1.95
3403059--3403208	55	2.8	54	80	4	149	26	15	29	28	1.96
3403031--3403208	27	6.6	27	77	6	146	25	15	28	30	1.96
3403032--3403187	82	1.9	81	81	6	190	25	16	28	30	1.96
3405156--3405204	26	2.0	26	88	8	75	46	0	4	48	1.20
3406213--3406406	46	4.2	45	80	5	201	27	21	21	30	1.98
3406229--3406401	92	1.9	92	84	4	233	26	20	22	30	1.98
3406233--3406434	92	2.2	92	80	5	221	27	21	20	30	1.98
3407836--3407885	25	2.0	25	88	0	73	42	28	18	12	1.85
3418913--3418960	23	2.1	23	92	0	78	66	2	14	16	1.34
3422992--3423033	3	14.0	3	94	0	75	33	35	0	30	1.58
3430999--3431026	14	2.0	14	100	0	56	57	0	7	35	1.26
3434425--3434466	17	2.5	17	88	0	66	21	11	38	28	1.89
3434642--3434671	16	1.9	16	93	6	53	30	0	20	50	1.49
3441177--3441313	61	2.3	58	83	7	159	43	0	5	50	1.29
3441403--3441492	46	2.0	44	83	12	112	40	22	5	32	1.77
3441481--3441539	16	3.7	16	77	4	57	27	18	3	50	1.62
3441473--3441539	32	2.1	32	88	0	98	28	19	4	47	1.68
3443712--3443843	66	2.0	66	93	0	228	27	23	9	40	1.85
3450968--3451113	73	2.0	73	98	0	283	19	16	25	39	1.92
3452607--3452651	18	2.4	19	79	20	51	53	0	6	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3463581--3463790	27	7.8	27	85	4	262	33	12	24	30	1.92
3466219--3466308	44	2.0	44	93	0	153	26	5	36	31	1.79
3470020--3470163	40	3.6	40	82	10	152	27	27	20	24	1.99
3481289--3481338	26	1.9	26	83	0	64	18	30	14	38	1.89
3487239--3487321	40	2.1	40	88	0	121	32	16	19	31	1.94
3487255--3487391	40	3.4	40	80	2	141	26	19	24	29	1.98
3492151--3493218	51	21.1	51	97	1	1962	31	27	7	33	1.85
3495741--3495785	23	2.0	23	95	0	81	44	4	35	15	1.67
3501440--3501609	58	2.9	58	99	0	331	41	13	21	22	1.88
3503344--3503514	93	1.8	93	88	0	261	23	20	27	28	1.99
3503348--3503519	46	3.7	46	71	13	163	23	20	26	29	1.99
3505193--3505654	28	16.5	28	99	0	881	34	28	11	25	1.90
3513749--3513816	29	2.3	29	82	5	84	27	29	13	29	1.94
3513638--3513965	174	1.9	174	95	0	593	31	24	14	30	1.94
3513918--3513996	29	2.7	30	82	13	110	30	30	13	25	1.94
3528047--3528308	39	6.7	40	87	7	337	25	22	27	24	2.00
3529170--3529219	18	2.5	20	81	9	59	4	22	4	70	1.21
3530936--3530989	28	1.9	28	100	0	108	27	40	7	24	1.81
3536825--3536922	49	2.0	49	97	0	187	24	20	15	39	1.91
3538082--3538432	47	7.4	47	93	1	567	28	30	8	32	1.87
3540691--3541011	40	8.1	40	88	1	439	25	26	22	25	2.00
3543234--3544154	47	19.6	47	90	0	1419	27	29	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3543234--3544154	94	9.8	94	96	0	1635	27	29	10	33	1.89
3563065--3563103	19	2.2	17	86	9	51	43	7	2	46	1.46
3565107--3565241	6	22.5	6	71	8	69	9	17	1	71	1.21
3565107--3565241	18	7.5	18	75	7	114	9	17	1	71	1.21
3565156--3565241	24	3.7	23	78	7	84	8	16	2	73	1.18
3567488--3567526	19	2.2	17	86	9	51	43	7	2	46	1.46
3572013--3572065	23	2.4	22	76	20	56	9	22	1	66	1.31
3598654--3598698	23	1.9	23	86	13	65	11	15	8	64	1.49
3603638--3603673	18	2.0	18	89	10	56	19	11	13	55	1.68
3606599--3606783	79	2.3	82	83	7	229	25	27	22	24	2.00
3606599--3606783	40	4.7	40	81	10	218	25	27	22	24	2.00
3614568--3614790	79	2.8	78	83	7	272	24	27	22	25	2.00
3614568--3614790	39	5.7	40	87	6	280	24	27	22	25	2.00
3630671--3630934	40	6.6	39	89	3	334	24	22	28	25	2.00
3630672--3630967	79	3.7	77	83	8	312	25	21	27	24	2.00
3638686--3638763	29	2.7	28	84	11	104	25	15	30	28	1.96
3638716--3639043	174	1.9	174	97	0	620	29	14	24	30	1.95
3641255--3641343	42	2.1	42	95	0	160	39	13	23	23	1.90
3660855--3660879	13	1.9	13	100	0	50	84	0	16	0	0.63
3661409--3661497	42	2.1	42	95	0	160	39	13	24	22	1.90
3676124--3676212	42	2.1	42	95	0	160	40	13	23	22	1.89
3689878--3690114	28	8.5	28	90	1	361	27	12	26	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3702878--3702976	28	3.5	28	87	4	119	27	15	27	30	1.96
3706638--3706714	22	3.4	22	73	16	68	41	28	5	24	1.76
3706645--3706709	22	2.8	23	79	6	69	38	29	6	26	1.80
3709938--3709992	24	2.3	24	90	0	83	34	34	1	29	1.68
3715281--3715424	73	2.0	73	97	0	270	17	19	16	46	1.84
3738551--3738622	33	2.1	34	92	2	119	38	6	13	40	1.72
3739211--3739405	89	2.2	89	100	0	390	33	16	18	31	1.94
3739574--3739608	18	1.9	18	100	0	70	34	14	5	45	1.68
3745798--3745829	15	2.0	17	88	11	50	81	0	12	6	0.87
3760361--3760509	75	2.0	75	95	0	271	36	13	12	37	1.83
3761837--3761995	52	3.2	51	77	9	159	32	15	11	40	1.83
3761824--3761955	50	2.6	51	81	3	158	34	15	12	37	1.84
3771820--3772202	192	2.0	192	97	0	730	33	19	13	33	1.91
3772078--3772650	286	2.0	286	98	0	1101	36	22	13	27	1.91
3774503--3774656	78	2.0	78	89	6	242	32	20	22	24	1.98
3778680--3778718	20	2.0	20	94	0	69	25	33	17	23	1.96
3785101--3785234	67	2.0	67	95	0	241	26	15	16	41	1.88
3786410--3786604	90	2.2	90	100	0	390	35	13	13	37	1.84
3788913--3789135	119	1.9	120	84	6	301	24	27	23	24	2.00
3788892--3789135	40	6.1	40	84	6	291	24	27	22	25	2.00
3790854--3790908	24	2.3	24	90	0	83	29	1	34	34	1.68
3794133--3794201	22	3.0	23	80	4	77	26	5	27	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3811815--3811937	63	2.0	63	88	3	185	41	21	13	24	1.88
3813820--3814067	124	2.0	124	100	0	496	25	19	17	37	1.93
3814351--3814534	93	2.0	93	97	0	350	18	23	9	48	1.76
3817453--3817541	42	2.1	42	95	0	160	23	23	13	39	1.90
3819411--3819488	39	2.0	39	94	0	138	15	28	28	28	1.96
3820132--3820220	42	2.1	42	95	0	160	23	23	13	39	1.90
3823477--3823574	49	2.0	49	97	0	187	34	25	24	15	1.94
3823576--3823774	90	2.2	90	99	0	389	39	16	15	28	1.89
3823787--3823938	77	2.0	77	98	0	295	31	30	15	22	1.95
3823946--3824152	104	2.0	104	99	0	405	37	23	16	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141