genome.fa.s6.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  139  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41991705--41991851	30	5.0	30	74	7	131	37	15	28	18	1.91
41991703--41991931	89	2.6	90	80	4	239	37	13	27	21	1.90
41991706--41991853	59	2.5	60	75	8	160	37	15	28	18	1.92
41995533--41995571	20	2.0	20	90	10	62	56	2	25	15	1.52
42002073--42002319	29	8.4	30	78	5	184	35	13	27	24	1.92
42002166--42002289	59	2.1	60	80	4	135	33	12	28	25	1.92
42002094--42002259	88	1.9	88	83	5	219	34	13	27	23	1.93
42006610--42006809	45	4.5	46	80	6	187	34	26	15	24	1.94
42006646--42006813	90	1.9	90	85	0	237	33	24	15	26	1.95
42013614--42013659	22	2.1	22	100	0	92	39	17	4	39	1.69
42023163--42023326	80	2.0	80	96	0	301	20	12	18	48	1.80
42024016--42024320	45	6.8	45	88	1	416	35	19	21	23	1.96
42024064--42024354	135	2.2	135	83	3	354	36	19	20	22	1.95
42041914--42042219	45	6.8	45	85	0	380	36	18	20	24	1.94
42041914--42042251	135	2.5	135	85	0	435	38	17	20	23	1.93
42041912--42042261	45	7.8	45	81	3	346	38	18	20	23	1.93
42044253--42044351	43	2.3	43	81	10	121	18	27	31	23	1.97
42061393--42061436	19	2.3	19	88	0	61	38	0	45	15	1.47
42061393--42061453	7	8.6	7	77	16	54	36	0	47	16	1.47
42061401--42061446	15	3.0	16	82	17	62	36	0	47	15	1.45
42065453--42065492	17	2.3	18	86	4	55	12	7	42	37	1.71
42065783--42066173	132	3.0	132	90	1	577	25	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42065847--42066160	44	7.1	44	65	8	154	24	22	20	32	1.98
42097954--42097985	16	2.0	16	100	0	64	37	0	37	25	1.56
42097956--42097991	16	2.2	16	90	0	54	41	2	30	25	1.69
42097973--42098065	44	2.1	46	87	4	136	31	4	27	36	1.76
42098339--42098396	16	3.8	15	73	22	50	51	1	1	44	1.21
42098341--42098375	18	2.0	17	88	5	52	54	2	0	42	1.15
42098217--42098607	117	3.4	117	95	1	696	50	3	2	42	1.34
42098458--42098492	18	2.0	18	88	5	54	54	0	0	45	0.99
42098476--42098712	102	2.3	103	91	7	385	51	4	2	41	1.35
42098593--42098777	61	3.1	61	72	18	206	50	4	2	42	1.38
42100754--42100799	24	2.0	23	83	8	58	58	19	4	17	1.55
42101342--42101368	10	2.7	10	100	0	54	81	0	18	0	0.69
42102328--42102365	16	2.4	16	95	0	67	34	0	34	31	1.58
42102344--42102451	45	2.6	43	82	11	127	32	2	29	35	1.72
42102579--42102620	15	2.7	16	82	14	52	52	2	0	45	1.13
42102588--42102629	15	2.9	15	82	10	52	52	0	0	47	1.00
42102699--42102740	15	2.8	16	85	10	61	50	2	0	47	1.14
42102814--42102860	16	3.0	16	78	12	53	51	2	0	46	1.13
42102959--42103006	18	2.8	18	74	22	50	56	0	0	43	0.99
42102938--42102989	15	3.6	15	80	12	56	53	1	0	44	1.11
42102582--42103014	120	3.6	120	97	0	812	49	6	1	42	1.35
42103074--42103115	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42109671--42109701	15	2.1	15	93	0	53	48	0	16	35	1.46
42127709--42127933	114	2.0	114	97	0	423	44	10	6	39	1.64
42128614--42128661	18	2.7	17	78	9	60	39	16	2	41	1.60
42133404--42133441	3	12.7	3	88	0	58	31	0	5	63	1.17
42133404--42133441	12	3.2	12	96	0	67	31	0	5	63	1.17
42138771--42139196	44	9.8	44	73	9	318	30	20	21	26	1.98
42138771--42139363	305	1.9	304	82	4	728	29	21	22	25	1.99
42141090--42141142	18	2.9	18	80	0	70	37	16	1	43	1.60
42141783--42142224	219	2.0	219	98	0	848	34	21	16	27	1.95
42145625--42145672	23	2.1	22	88	3	69	54	6	27	12	1.61
42154183--42154374	43	4.5	43	82	7	212	31	24	15	28	1.95
42154178--42154415	85	2.8	86	79	13	247	31	24	14	28	1.95
42154183--42154421	43	5.5	44	77	10	203	32	23	15	28	1.95
42157095--42157153	27	2.2	27	87	0	82	32	6	20	40	1.78
42160801--42160839	20	1.9	21	85	15	55	28	20	5	46	1.72
42168467--42168520	26	2.1	26	92	0	90	46	0	7	46	1.31
42171451--42171543	42	2.2	42	92	3	152	29	16	26	27	1.97
42172464--42172491	13	2.2	13	100	0	56	14	14	21	50	1.78
42176671--42176767	28	3.4	27	78	2	86	43	21	15	19	1.88
42176719--42176904	98	1.9	98	87	0	273	37	23	18	21	1.94
42180997--42181182	98	1.9	98	87	0	273	37	23	18	21	1.94
42203285--42203381	27	3.6	27	91	2	149	28	28	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42211279--42211442	36	4.4	37	81	6	190	34	21	15	28	1.94
42211279--42211483	39	5.5	38	80	10	201	34	20	14	29	1.93
42211284--42211446	73	2.2	72	83	7	195	33	21	15	28	1.95
42214387--42214425	20	2.0	20	89	0	60	46	0	20	33	1.51
42216380--42216420	18	2.2	19	91	4	66	39	0	0	60	0.96
42216377--42216421	19	2.3	20	85	11	67	37	0	0	62	0.96
42227885--42228036	33	4.5	33	83	3	180	40	33	8	17	1.80
42234797--42234918	23	5.3	23	66	11	79	34	21	18	26	1.96
42234804--42234911	46	2.3	46	87	0	144	33	21	20	25	1.97
42235365--42235424	30	2.0	29	83	6	75	31	21	5	41	1.75
42238969--42239148	90	2.0	90	100	0	360	31	23	17	27	1.97
42245712--42245854	33	4.4	33	87	3	191	41	31	11	15	1.82
42245722--42245854	65	2.0	66	86	4	189	41	30	12	15	1.84
42249315--42249627	36	8.5	36	78	5	243	33	19	15	31	1.92
42249315--42249627	73	4.2	74	78	4	292	33	19	15	31	1.92
42249315--42249605	109	2.6	109	84	2	357	34	19	15	30	1.93
42251668--42251845	27	6.6	27	84	3	205	29	28	15	26	1.96
42251689--42251844	82	1.9	81	88	3	233	29	28	15	26	1.96
42259858--42260035	27	6.6	27	83	3	196	29	28	15	26	1.96
42259879--42260034	82	1.9	81	88	3	233	29	28	15	26	1.96
42278173--42278346	85	2.0	85	98	0	339	43	6	17	31	1.76
42281554--42281731	27	6.6	27	83	5	180	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42281575--42281730	82	1.9	81	86	3	224	28	28	16	26	1.97
42284022--42284091	27	2.6	27	79	0	86	25	27	12	34	1.92
42286518--42286601	28	3.0	28	79	5	89	38	19	16	26	1.92
42293795--42293841	19	2.5	19	86	6	60	25	19	10	44	1.82
42305125--42305175	15	3.4	15	75	20	61	19	19	35	25	1.95
42305130--42305178	13	3.5	13	75	20	53	18	18	36	26	1.94
42305118--42305186	30	2.3	30	97	0	129	14	18	37	28	1.91
42305296--42305329	13	2.6	13	100	0	68	8	23	38	29	1.85
42308622--42308871	40	6.3	40	94	0	394	24	20	28	26	1.99
42308569--42308871	80	3.8	80	89	2	396	24	20	27	26	1.99
42308569--42308871	120	2.5	119	87	2	410	24	20	27	26	1.99
42316599--42316782	40	4.6	40	85	5	185	24	21	27	26	1.99
42316599--42316782	80	2.3	81	83	3	221	24	21	27	26	1.99
42316599--42316817	80	2.8	80	80	4	203	25	21	27	25	1.99
42317671--42317797	63	2.0	63	100	0	254	29	14	29	25	1.95
42318645--42318762	59	2.0	59	93	0	200	33	18	28	18	1.95
42321366--42321509	76	1.9	76	94	0	252	32	14	19	33	1.92
42321789--42321962	87	2.0	87	96	0	321	26	12	22	38	1.89
42322130--42322283	76	2.0	76	98	0	299	25	24	25	24	2.00
42324827--42325010	40	4.6	40	85	5	176	23	21	28	26	1.99
42324827--42325010	80	2.3	81	82	5	214	23	21	28	26	1.99
42324863--42325045	80	2.3	80	80	2	199	25	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42332551--42332597	19	2.3	20	82	10	60	36	0	14	48	1.44
42332946--42333178	50	4.6	50	73	3	216	27	17	24	30	1.97
42336799--42337056	23	11.2	23	81	6	263	22	20	25	31	1.98
42336799--42337056	69	3.7	69	83	3	304	22	20	25	31	1.98
42346004--42346174	93	1.8	93	96	0	315	28	29	21	21	1.98
42345999--42346171	46	3.7	46	80	13	219	28	28	21	21	1.98
42346594--42346653	30	2.0	30	90	0	93	30	25	8	36	1.85
42355388--42355457	36	1.9	36	91	5	115	48	11	5	34	1.63
42355638--42355697	30	2.0	30	90	0	93	31	25	6	36	1.82
42356817--42356860	6	6.7	6	85	15	52	13	2	2	81	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141