genome.fa.s6.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  37  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11100285--11100313	13	2.2	13	100	0	58	79	6	0	13	0.93
11100368--11100411	16	2.7	16	96	3	79	65	4	11	18	1.40
11109799--11109847	21	2.3	22	82	10	75	42	18	24	14	1.87
11109807--11109906	21	4.8	21	72	2	85	42	18	23	17	1.89
11110517--11110541	10	2.5	10	100	0	50	44	20	0	36	1.52
11117190--11117215	8	3.2	8	100	0	52	88	0	0	11	0.52
11123203--11123262	30	2.0	31	86	3	86	40	0	40	20	1.52
11127005--11127123	49	2.4	49	85	0	157	39	19	20	21	1.93
11127277--11127374	46	2.1	46	86	0	142	40	15	14	29	1.86
11128315--11128344	15	2.0	15	93	0	51	16	0	46	36	1.47
11141824--11141875	14	3.0	19	71	26	60	51	0	0	48	1.00
11141819--11141874	22	2.5	22	80	5	60	55	0	0	44	0.99
11144499--11144525	13	2.1	13	100	0	54	37	0	14	48	1.45
11151019--11151045	12	2.2	12	100	0	54	48	7	7	37	1.59
11160732--11160769	15	2.4	16	86	8	60	60	5	7	26	1.46
11162892--11162938	16	2.9	15	87	9	58	70	0	21	8	1.14
11162845--11162927	20	4.1	20	71	14	62	73	2	18	6	1.15
11169232--11169961	207	3.5	204	79	7	661	31	20	14	33	1.93
11169233--11169916	104	6.6	104	83	3	727	31	20	14	32	1.93
11170203--11170236	17	2.0	17	94	0	59	29	8	23	38	1.85
11181471--11181512	20	2.0	21	86	13	61	59	0	9	30	1.29
11181471--11181512	21	2.0	20	86	4	57	59	0	9	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11182000--11182055	23	2.4	23	80	14	69	41	17	8	32	1.81
11190484--11190518	17	2.1	17	89	5	54	14	28	0	57	1.38
11191368--11191413	4	10.8	4	82	13	56	47	0	4	47	1.21
11192745--11192788	23	1.9	23	100	0	88	40	22	6	29	1.80
11193845--11193936	19	4.8	19	91	0	157	39	9	14	36	1.79
11193845--11193959	19	5.7	22	80	15	94	38	8	14	38	1.77
11199026--11199058	14	2.3	15	89	5	50	27	15	30	27	1.96
11200632--11200956	44	7.4	44	65	13	132	28	18	24	28	1.98
11200460--11201502	132	7.9	132	95	0	1755	28	19	23	29	1.98
11201421--11201570	43	3.4	43	64	20	103	32	15	21	31	1.94
11201409--11201588	88	2.0	88	96	0	333	28	17	20	33	1.95
11201136--11201799	351	1.9	352	92	0	1125	29	17	22	30	1.97
11201268--11201722	220	2.1	219	92	0	757	28	18	22	30	1.97
11201497--11201799	132	2.3	132	92	0	498	29	16	23	30	1.96
11201146--11201879	351	2.1	351	88	2	1082	28	17	23	30	1.97
11201777--11201878	42	2.4	42	78	5	105	29	9	26	34	1.88
11201497--11201853	132	2.7	132	88	2	477	28	16	23	31	1.96
11205028--11205075	19	2.6	19	78	18	57	60	0	2	37	1.09
11205566--11205602	9	4.1	9	89	0	56	32	10	10	45	1.74
11218160--11218192	17	1.9	17	88	11	50	6	9	12	72	1.26
11223111--11223168	30	1.9	30	85	0	80	12	29	39	18	1.87
11225056--11225091	16	2.1	18	90	10	58	75	0	5	19	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11225229--11225271	9	4.9	9	78	16	54	76	0	0	23	0.78
11225204--11225261	16	3.7	16	79	4	64	74	1	1	22	1.01
11225496--11225577	41	2.0	41	97	0	155	47	7	29	15	1.73
11228352--11228501	43	3.5	44	81	8	173	29	26	18	26	1.98
11237189--11237260	22	3.3	21	75	11	56	33	15	27	23	1.95
11243730--11243787	26	2.2	26	81	6	64	29	22	24	24	1.99
11243741--11243793	26	2.0	27	89	10	83	24	20	24	30	1.99
11257196--11257271	31	2.5	31	91	4	118	52	6	2	38	1.41
11262387--11262496	55	2.0	55	92	0	184	39	9	12	39	1.75
11262405--11262493	26	3.3	26	67	14	72	38	7	12	41	1.72
11265735--11265841	55	1.9	55	92	0	178	38	8	13	40	1.74
11266142--11266182	19	2.0	20	90	9	66	48	14	0	36	1.44
11266513--11266553	17	2.4	17	100	0	82	21	36	26	14	1.93
11267273--11267379	38	2.8	38	86	0	142	37	27	21	14	1.92
11272065--11272257	50	3.8	50	88	0	260	21	31	22	25	1.98
11274104--11274253	38	4.0	38	91	0	212	37	30	21	10	1.87
11274120--11274192	22	3.6	22	68	21	68	38	28	21	10	1.88
11275891--11276013	63	2.0	63	86	0	174	23	8	32	34	1.86
11277481--11278300	110	7.4	111	95	1	1373	33	19	16	30	1.94
11279152--11279193	22	1.9	22	90	0	66	2	4	40	52	1.35
11279508--11279802	132	2.2	132	87	2	414	27	21	18	32	1.96
11279792--11280019	46	5.0	45	92	2	348	29	26	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11282065--11282102	10	3.7	10	89	6	58	0	15	0	84	0.63
11282067--11282115	25	2.0	25	83	0	62	4	14	2	79	0.97
11282125--11282150	10	2.6	10	100	0	52	15	0	0	84	0.62
11286161--11286460	110	2.7	110	92	1	496	33	20	16	29	1.95
11287865--11287906	22	1.9	22	90	0	66	2	4	40	52	1.35
11297468--11297523	28	2.0	27	86	10	78	19	1	7	71	1.18
11310398--11310867	131	3.6	132	92	2	760	30	20	25	23	1.98
11311449--11311500	27	2.0	27	85	11	72	19	1	7	71	1.20
11312320--11312360	18	2.3	18	86	0	55	26	7	4	60	1.43
11319315--11319340	13	2.0	13	100	0	52	53	7	7	30	1.57
11321464--11321519	23	2.3	24	82	14	71	50	3	0	46	1.19
11321477--11321519	11	3.6	12	82	17	54	51	2	0	46	1.13
11323661--11323747	40	2.2	38	82	12	95	50	8	22	18	1.73
11323714--11323786	24	3.0	24	86	4	103	52	6	23	17	1.69
11332892--11332953	26	2.4	26	91	5	99	30	9	16	43	1.80
11335889--11335930	21	2.0	21	85	0	57	40	19	21	19	1.92
11346770--11346821	20	2.8	18	78	21	63	42	1	3	51	1.31
11348878--11348924	23	2.0	23	91	0	76	25	21	6	46	1.74
11354462--11354515	19	2.9	19	73	18	60	38	3	3	53	1.36
11354503--11354546	16	2.7	16	89	10	63	34	6	6	52	1.55
11354627--11354655	11	2.7	11	94	5	51	55	0	0	44	0.99
11361108--11361175	17	4.0	17	70	0	55	48	19	5	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11361086--11361185	51	2.0	51	86	4	139	47	17	8	28	1.75
11361833--11361888	18	3.1	18	76	0	58	44	23	3	28	1.70
11362329--11362399	33	2.3	33	81	15	89	49	9	4	36	1.56
11362329--11362399	29	2.2	31	80	16	83	49	9	4	36	1.56
11377895--11377952	1	58.0	1	80	0	53	87	5	3	3	0.72
11377883--11377961	39	2.0	39	95	0	140	79	7	6	6	1.05
11378503--11378535	6	5.7	6	89	3	50	30	51	15	3	1.58
11378496--11378548	18	2.9	18	80	5	63	32	49	16	1	1.57
11379261--11379348	20	4.4	20	77	4	90	62	0	3	34	1.12
11379241--11379306	31	2.2	29	86	5	87	66	1	4	27	1.20
11379250--11379315	10	6.5	10	73	15	55	66	0	3	30	1.06
11379274--11379350	19	3.9	19	72	12	75	59	0	3	36	1.16
11379479--11379516	19	2.1	19	90	5	60	44	2	0	52	1.14
11384338--11384495	20	7.8	20	74	9	88	35	3	2	58	1.30
11384414--11384476	19	3.2	19	77	16	65	36	4	0	58	1.19
11384339--11384447	41	2.7	40	76	8	103	37	3	2	55	1.32
11384900--11384949	24	2.1	24	85	7	66	24	0	4	72	1.02
11384940--11384995	29	1.9	28	92	7	94	39	0	3	57	1.16
11385035--11385082	21	2.3	21	82	13	55	45	0	16	37	1.48
11385043--11385082	21	1.9	22	85	10	57	47	0	15	37	1.45
11390882--11390972	35	2.6	35	83	0	128	40	32	10	15	1.82
11398098--11398155	17	3.2	16	79	16	53	50	0	25	24	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11402631--11402734	30	3.5	30	84	7	115	25	26	21	26	1.99
11406071--11406105	11	3.1	11	91	4	52	51	0	0	48	1.00
11406081--11406162	30	2.8	29	75	18	80	58	1	0	40	1.06
11406194--11406268	28	2.6	30	85	8	93	60	1	0	38	1.06
11406229--11406280	21	2.5	21	90	0	86	63	3	0	32	1.12
11406362--11406452	21	4.3	21	89	9	132	56	0	0	43	0.99
11406362--11406452	42	2.1	42	92	6	148	56	0	0	43	0.99
11407197--11407227	15	2.1	15	100	0	62	32	12	19	35	1.90
11407745--11407842	49	2.0	49	91	0	160	22	20	21	35	1.96
11408517--11408542	4	6.5	4	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141