genome.fa.s6.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  116  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34021268--34021332	33	1.9	34	87	6	96	13	3	10	72	1.23
34034713--34034764	18	2.9	17	80	11	52	36	0	3	59	1.16
34042721--34042758	5	7.6	5	100	0	76	36	0	0	63	0.95
34046938--34047123	35	5.3	35	82	0	210	39	28	15	17	1.89
34051434--34051507	37	2.0	37	91	0	121	52	5	18	22	1.66
34060283--34060390	44	2.5	44	78	3	128	22	24	24	29	1.99
34060335--34060583	129	1.9	129	90	1	392	23	22	22	30	1.99
34060736--34061233	87	5.7	87	95	0	829	25	21	20	32	1.98
34063289--34063327	13	2.9	13	88	11	53	0	25	0	74	0.82
34069085--34069117	7	4.6	7	96	3	57	84	0	3	12	0.72
34071032--34071084	25	2.1	25	92	0	88	37	5	7	49	1.55
34071754--34072172	89	4.7	89	80	6	440	32	14	13	39	1.85
34104156--34104220	32	2.0	32	96	0	121	36	10	18	33	1.86
34106050--34106234	40	4.7	40	81	5	178	27	28	20	24	1.99
34106017--34106234	40	5.5	39	77	7	165	25	27	20	25	1.99
34111242--34111275	17	2.0	17	88	11	52	44	0	8	47	1.34
34111701--34111849	74	2.0	74	90	0	235	30	19	20	30	1.97
34117142--34117180	17	2.2	18	95	4	71	10	30	48	10	1.70
34117642--34117687	24	2.0	23	82	4	56	17	0	52	30	1.45
34123999--34124046	23	2.1	23	96	0	87	45	16	0	37	1.48
34124157--34124193	19	1.9	19	88	0	56	29	29	24	16	1.96
34126851--34126912	30	2.1	30	100	0	124	37	3	9	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34128789--34128861	32	2.2	34	80	7	87	13	13	13	58	1.63
34146900--34146947	6	8.3	6	81	4	55	20	0	2	77	0.88
34151947--34151974	13	2.2	13	100	0	56	25	0	21	53	1.46
34156796--34156844	19	2.5	20	78	18	59	18	0	18	63	1.32
34156793--34156831	17	2.2	18	86	4	53	23	0	15	61	1.33
34165267--34165366	39	2.6	38	81	10	123	50	10	3	37	1.51
34168535--34168639	41	2.5	42	81	4	115	21	18	19	40	1.91
34170122--34170217	48	2.0	48	91	0	156	19	16	5	58	1.57
34171898--34172046	40	3.7	40	83	1	183	20	14	28	36	1.92
34172314--34172357	21	2.1	21	95	0	79	31	18	18	31	1.95
34172625--34172654	11	2.9	10	90	9	51	10	6	13	70	1.34
34178427--34178534	54	2.0	54	82	8	130	25	32	20	22	1.98
34181544--34181644	50	2.0	50	84	3	132	25	17	19	36	1.94
34184293--34184400	55	2.0	54	87	1	153	31	25	14	27	1.95
34186702--34186750	20	2.5	20	83	10	64	32	16	10	40	1.82
34190604--34190751	3	47.3	3	69	22	60	27	4	6	62	1.37
34190670--34190738	19	4.0	18	77	20	60	27	5	1	65	1.24
34198108--34198151	22	2.0	22	90	0	70	63	4	0	31	1.14
34198905--34199001	49	1.9	51	82	12	121	29	4	4	61	1.33
34200974--34201019	16	2.6	17	83	10	58	56	0	0	43	0.99
34222326--34222471	45	3.2	45	84	3	195	42	19	17	21	1.89
34224932--34225248	159	2.0	159	99	0	625	39	17	7	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34227763--34227913	28	5.4	28	91	1	214	25	12	28	33	1.92
34240743--34240797	30	1.9	28	82	10	67	52	5	1	40	1.35
34241208--34241248	2	20.5	2	100	0	82	51	0	48	0	1.00
34242433--34242472	20	2.0	20	85	0	53	60	0	15	25	1.35
34253584--34253899	49	6.6	49	94	2	509	32	6	29	30	1.84
34263728--34263836	29	3.7	29	77	7	96	34	30	16	18	1.93
34267211--34267281	5	14.6	5	74	21	62	38	0	4	57	1.18
34267239--34267281	19	2.3	19	92	8	70	41	0	0	58	0.98
34267291--34267321	15	2.1	15	93	0	53	77	0	19	3	0.90
34267944--34268055	37	2.9	39	73	8	111	22	20	27	29	1.98
34268736--34268786	17	3.0	17	94	0	84	39	13	13	33	1.84
34273411--34273479	9	7.4	9	78	18	79	36	2	0	60	1.11
34273395--34273484	18	4.9	18	76	18	80	36	3	0	60	1.14
34273640--34273682	19	2.1	21	87	8	63	27	6	0	65	1.18
34273648--34273686	19	2.0	20	90	5	62	35	5	0	58	1.20
34275584--34275622	18	2.3	16	82	8	51	41	0	5	53	1.23
34276024--34276078	23	2.5	22	80	8	58	45	5	0	49	1.25
34276034--34276078	23	2.0	22	86	4	63	46	6	0	46	1.29
34277786--34277845	16	3.8	16	70	17	54	51	0	3	45	1.17
34277780--34277855	29	2.6	29	89	2	116	48	0	3	47	1.20
34283049--34283079	13	2.5	13	94	5	55	6	3	6	83	0.88
34284533--34284608	20	3.8	19	87	5	98	30	17	28	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34289936--34289983	18	2.7	17	78	9	51	41	0	14	43	1.45
34291483--34291677	51	3.9	50	77	6	196	27	15	27	29	1.96
34293236--34293275	19	2.1	19	86	9	55	55	5	5	35	1.44
34293688--34293756	36	1.9	35	82	11	86	43	1	2	52	1.25
34296480--34296573	42	2.2	42	86	0	134	40	13	24	21	1.89
34296964--34297197	50	4.8	48	80	7	235	26	18	31	23	1.98
34296969--34297150	97	1.8	99	88	3	278	26	18	32	21	1.97
34304337--34304372	14	2.6	14	100	0	72	0	5	47	47	1.25
34304447--34304553	37	2.9	39	75	19	104	40	2	4	52	1.37
34304535--34304645	59	1.9	56	85	5	150	43	2	3	50	1.33
34304753--34304800	26	2.0	22	84	15	60	39	6	14	39	1.71
34307163--34307188	13	2.0	13	100	0	52	53	7	0	38	1.30
34309842--34309894	19	2.7	20	77	11	56	54	3	0	41	1.18
34320180--34320226	24	2.0	24	87	4	69	21	10	10	57	1.62
34321236--34321307	28	2.6	27	80	8	81	37	5	0	56	1.22
34321236--34321373	30	4.8	28	78	15	120	38	3	0	57	1.16
34321293--34321335	21	2.1	20	82	4	50	39	2	0	58	1.11
34324153--34324200	20	2.4	20	85	0	69	18	31	12	37	1.88
34325806--34326048	50	4.7	52	76	8	205	27	20	27	23	1.99
34325806--34325998	50	3.7	50	81	4	206	27	20	27	23	1.99
34325812--34325998	100	1.8	104	82	6	247	28	19	28	22	1.98
34328965--34329336	188	2.0	189	94	0	656	22	20	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34351422--34351451	10	3.0	10	95	0	51	13	40	10	36	1.78
34356689--34356721	15	2.3	15	89	5	50	51	6	15	27	1.66
34357873--34358211	49	7.0	49	81	6	386	26	10	13	49	1.74
34357909--34358179	100	2.8	95	87	4	341	27	11	13	47	1.77
34357994--34358211	100	2.2	100	93	1	366	25	11	14	49	1.75
34359884--34359918	15	2.2	16	90	5	54	42	14	37	5	1.69
34379204--34379354	28	5.4	28	91	1	214	25	12	28	33	1.92
34382242--34382293	21	2.5	21	100	0	104	63	3	28	3	1.30
34385209--34385292	28	3.2	28	68	22	81	27	9	9	53	1.64
34385204--34385450	49	5.0	49	88	3	368	25	8	14	52	1.69
34385204--34385453	100	2.5	97	88	4	365	24	8	14	52	1.69
34388687--34388780	47	2.0	47	89	0	143	35	19	17	28	1.94
34395374--34395420	21	2.2	21	82	14	53	63	6	6	23	1.41
34407508--34407542	15	2.2	16	90	5	54	8	25	0	65	1.21
34422768--34422798	16	1.9	16	93	0	53	61	3	0	35	1.12
34437260--34437298	21	1.9	20	84	5	51	41	25	15	17	1.89
34439020--34439061	19	2.2	19	86	0	57	11	52	0	35	1.38
34440551--34440583	16	2.1	16	100	0	66	42	6	15	36	1.71
34443874--34444064	50	3.8	49	78	9	213	25	17	27	29	1.97
34443872--34444064	53	3.8	52	79	10	227	25	17	27	29	1.97
34443885--34444074	104	1.9	101	88	5	292	25	17	27	28	1.98
34444070--34444168	46	2.2	43	81	12	110	23	18	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34446308--34446345	18	2.1	19	85	14	53	23	21	7	47	1.77
34455581--34455637	27	2.1	27	100	0	114	24	17	3	54	1.59
34455755--34455791	18	2.1	18	100	0	74	32	0	5	62	1.18
34456974--34457097	49	2.5	49	81	2	133	31	29	15	24	1.95
34458749--34459055	75	4.1	75	99	0	596	45	16	6	30	1.74
34464369--34464459	46	2.0	46	91	4	148	29	25	9	35	1.88
34464453--34464652	100	2.0	100	100	0	400	25	26	13	36	1.92
34465786--34465833	17	2.9	17	90	3	71	54	18	0	27	1.44
34467105--34467287	96	1.9	95	91	2	296	35	14	18	32	1.90
34473232--34473300	32	2.2	32	97	0	129	42	4	11	42	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141