genome.fa.s6.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  120  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35609746--35609940	64	3.0	64	76	7	182	21	22	22	33	1.97
35611532--35611617	42	2.0	42	93	0	145	20	30	26	22	1.98
35612994--35613228	29	8.0	29	81	3	240	21	28	13	37	1.91
35612991--35613228	87	2.7	88	83	5	304	21	27	13	36	1.91
35620630--35620715	45	1.9	45	90	0	136	34	23	16	25	1.95
35620712--35620955	51	4.9	50	84	5	278	30	27	18	23	1.98
35636673--35636851	51	3.5	50	80	3	198	32	29	15	22	1.95
35636669--35636852	101	1.8	101	86	3	244	33	29	15	22	1.94
35638163--35638375	27	7.9	27	84	6	270	22	17	19	39	1.92
35642017--35642124	50	2.1	51	83	8	132	29	25	18	26	1.98
35662682--35662733	26	2.0	26	100	0	104	30	3	15	50	1.62
35665962--35666513	138	4.0	138	91	0	863	40	9	5	43	1.61
35666068--35666284	71	3.1	71	62	19	166	37	10	5	47	1.61
35665962--35666513	275	2.0	276	90	0	881	40	9	5	43	1.61
35674470--35674520	23	2.2	23	89	6	77	41	19	9	29	1.84
35677472--35677702	50	4.6	50	84	0	266	25	21	30	22	1.99
35679184--35679234	23	2.2	23	89	0	75	43	21	7	27	1.80
35679601--35680185	296	2.0	296	100	0	1170	39	9	14	36	1.77
35681923--35682137	41	5.3	41	81	1	227	33	14	29	21	1.93
35681917--35682135	82	2.7	81	83	2	269	34	15	29	21	1.93
35687939--35688075	46	3.0	47	77	6	147	30	21	18	29	1.97
35689161--35689494	43	7.7	43	76	8	248	33	28	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35689118--35689308	92	2.1	92	86	0	274	30	24	18	26	1.98
35691064--35691120	29	2.2	24	73	26	62	31	21	21	26	1.98
35692773--35693003	86	2.7	86	81	6	236	40	16	9	33	1.81
35693056--35693201	40	3.6	40	76	6	152	34	19	23	22	1.97
35693243--35693361	41	2.9	41	84	0	157	22	17	31	27	1.97
35693706--35693754	14	3.4	14	82	2	62	24	2	34	38	1.67
35693986--35694026	21	2.0	20	85	4	55	19	0	41	39	1.52
35694011--35694048	15	2.6	15	87	4	51	18	0	42	39	1.50
35693822--35694469	282	2.3	286	88	6	940	29	2	25	42	1.67
35694251--35694302	14	3.6	14	84	2	59	30	0	34	34	1.58
35694266--35694332	7	9.6	7	82	6	64	25	0	40	34	1.56
35694250--35694332	28	2.9	29	80	8	89	26	0	38	34	1.57
35694321--35694354	14	2.4	14	90	0	50	26	2	41	29	1.70
35694826--35695113	96	2.9	96	86	6	369	47	11	10	30	1.72
35694955--35695105	49	3.1	49	62	11	121	50	11	9	28	1.70
35695161--35695357	108	1.8	108	90	2	315	51	8	8	31	1.62
35706272--35706624	43	8.3	43	82	5	378	24	18	29	28	1.98
35706272--35706624	85	4.1	84	81	6	363	24	18	29	28	1.98
35706272--35706624	128	2.8	126	82	5	388	24	18	29	28	1.98
35707136--35707265	40	3.3	40	70	12	133	40	3	38	18	1.66
35707118--35707266	78	1.9	78	94	0	262	40	3	36	19	1.68
35708027--35708100	39	1.9	38	86	2	103	37	39	1	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35708047--35708110	21	2.9	21	83	6	65	39	40	1	18	1.60
35708065--35708110	21	2.1	22	88	4	67	41	41	0	17	1.49
35708102--35708139	15	2.6	15	83	4	51	44	28	0	26	1.54
35708255--35708376	7	17.0	7	71	11	68	41	38	0	18	1.57
35708252--35708319	36	1.9	35	90	3	109	41	39	1	17	1.59
35708329--35708376	15	3.3	15	82	5	62	45	35	0	18	1.50
35708708--35708923	41	5.3	41	85	2	263	29	27	20	22	1.99
35720115--35720162	21	2.2	22	78	10	55	45	0	2	52	1.12
35731998--35732054	30	1.9	30	92	0	96	29	36	21	12	1.90
35736560--35736832	50	5.5	50	89	0	411	26	21	30	21	1.99
35737791--35737838	25	1.9	25	100	0	96	20	22	18	37	1.94
35745694--35745743	25	2.0	26	84	4	66	52	0	16	32	1.44
35759716--35759808	24	3.9	24	85	0	123	23	19	25	31	1.98
35770218--35770267	25	2.0	25	100	0	100	44	8	16	32	1.76
35775119--35775273	43	3.7	40	77	6	121	31	27	16	23	1.96
35782864--35783077	88	2.5	84	81	4	239	40	18	8	32	1.81
35783093--35783151	30	2.0	30	86	6	84	61	0	3	35	1.13
35783416--35783521	9	11.3	9	71	12	54	33	3	0	62	1.20
35783377--35783465	28	3.0	28	76	15	90	28	6	1	64	1.26
35783416--35783514	47	2.1	48	83	12	125	33	4	1	61	1.21
35783425--35783522	19	5.2	19	72	11	76	30	4	1	64	1.19
35783620--35783836	89	2.4	88	82	9	251	30	8	19	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35791634--35792055	50	8.3	50	87	1	556	24	21	31	22	1.98
35791686--35792049	100	3.6	100	96	0	656	23	21	33	20	1.97
35792325--35792375	12	4.2	12	82	9	59	50	5	23	19	1.69
35795472--35795532	29	2.1	30	87	3	88	49	8	6	36	1.59
35810815--35810863	10	4.9	10	78	9	55	26	16	30	26	1.97
35810817--35810863	20	2.3	20	89	7	69	25	17	31	25	1.97
35812844--35812890	15	3.1	15	84	9	60	12	17	0	70	1.17
35815532--35815580	10	4.9	10	78	9	55	26	16	30	26	1.97
35815534--35815580	20	2.3	20	89	7	69	25	17	31	25	1.97
35825029--35825263	81	2.9	81	90	3	393	32	27	11	28	1.91
35830978--35831252	137	2.0	137	100	0	550	32	12	16	39	1.85
35832948--35833256	43	7.3	43	78	1	273	26	27	16	29	1.97
35832953--35833256	127	2.4	127	79	1	313	25	27	16	30	1.97
35832948--35833256	86	3.6	85	80	3	316	26	27	16	29	1.97
35837671--35837735	21	3.1	21	77	4	60	29	46	3	21	1.67
35837701--35837741	21	2.0	21	85	0	55	36	36	0	26	1.57
35838005--35838046	22	1.9	22	90	0	66	38	38	0	23	1.55
35837976--35838048	29	2.6	27	77	10	74	34	42	2	20	1.67
35838035--35838075	21	1.9	22	85	5	57	39	41	0	19	1.52
35838328--35838374	25	2.0	23	83	8	58	21	8	8	61	1.51
35838466--35838658	41	4.7	41	83	1	228	30	29	19	20	1.97
35840185--35840409	118	1.9	118	88	3	346	40	7	7	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35840299--35840743	138	3.2	138	90	0	692	40	8	6	44	1.59
35840065--35840738	256	2.5	260	86	5	908	41	8	6	44	1.60
35843004--35843083	39	2.1	39	85	4	108	45	22	5	27	1.73
35851960--35852118	45	3.6	45	81	7	164	35	28	13	22	1.92
35852001--35852159	45	3.5	45	81	0	174	35	25	14	24	1.94
35852001--35852177	90	2.0	90	80	2	203	35	25	13	24	1.93
35858547--35858617	20	3.5	20	68	0	61	35	21	29	14	1.92
35863000--35863177	25	7.1	25	78	5	180	28	19	19	33	1.96
35863000--35863177	75	2.4	75	83	3	207	28	19	19	33	1.96
35863775--35863800	5	5.2	5	100	0	52	38	19	19	23	1.93
35863749--35863800	26	2.0	26	81	7	61	34	15	26	23	1.94
35864445--35864504	30	2.0	31	86	3	86	41	0	38	20	1.52
35864719--35864755	9	4.1	9	85	0	56	32	10	10	45	1.74
35873061--35873127	12	5.6	12	73	19	59	10	23	0	65	1.23
35873170--35873211	12	3.7	12	81	18	54	11	16	2	69	1.29
35873861--35873898	19	2.0	19	100	0	76	47	15	10	26	1.78
35873867--35873909	19	2.2	19	83	4	50	48	18	6	25	1.73
35874251--35874292	12	3.6	11	90	9	66	9	2	7	80	0.97
35874251--35874292	11	3.5	12	87	9	59	9	2	7	80	0.97
35877833--35877893	26	2.3	26	80	2	68	27	9	21	40	1.85
35884146--35884255	55	2.0	55	98	0	211	44	6	12	36	1.68
35888735--35888768	17	2.1	16	88	5	50	14	8	17	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35890766--35891187	213	2.0	213	93	0	729	37	9	17	35	1.83
35897604--35897649	18	2.7	17	81	18	60	54	6	17	21	1.65
35898831--35898967	31	4.5	31	70	9	111	29	10	15	44	1.79
35898788--35899019	91	2.5	91	84	4	272	30	9	15	43	1.80
35902886--35903052	92	1.8	90	83	7	221	32	22	10	34	1.89
35903239--35903297	21	2.7	22	84	10	68	64	1	5	28	1.24
35903243--35903290	21	2.3	21	89	7	71	70	2	4	22	1.15
35903255--35903293	10	3.8	10	80	6	51	69	0	2	28	1.02
35903646--35903691	22	2.1	22	92	4	76	52	6	0	41	1.27
35903867--35904030	86	1.9	85	81	7	197	32	10	17	39	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141