genome.fa.s6.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  129  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38684132--38684212	27	3.0	26	82	8	74	51	3	7	37	1.48
38684242--38684322	39	2.1	39	84	4	103	53	4	7	34	1.51
38685802--38685826	2	12.5	2	100	0	50	0	48	0	52	1.00
38687873--38687953	40	2.0	40	87	0	117	32	18	22	27	1.97
38687997--38688143	40	3.7	40	87	1	188	28	21	22	27	1.99
38688448--38688556	7	15.4	7	68	12	53	22	0	30	45	1.59
38688448--38688562	14	8.1	14	72	13	83	22	0	31	45	1.59
38688522--38688591	14	4.9	14	78	3	50	17	0	38	42	1.49
38688459--38688591	21	6.2	20	69	17	81	20	0	34	43	1.57
38700535--38700712	27	6.6	27	84	3	205	29	28	15	26	1.96
38700556--38700711	82	1.9	81	88	3	233	29	28	15	26	1.96
38705256--38705433	51	3.5	49	84	5	214	25	16	27	29	1.97
38705444--38705531	46	2.0	44	82	8	106	25	17	22	35	1.95
38705638--38705710	37	1.9	38	86	2	103	43	2	20	32	1.66
38710712--38710864	50	3.0	51	78	1	182	27	15	28	28	1.96
38718078--38718134	29	2.0	29	96	0	105	21	36	5	36	1.76
38721642--38721761	28	4.2	28	74	5	98	36	20	19	24	1.95
38721686--38721757	29	2.5	27	78	10	72	43	18	19	19	1.89
38728660--38728686	13	2.1	13	100	0	54	33	14	7	44	1.73
38749328--38749382	17	3.0	18	80	20	69	45	1	3	49	1.30
38761983--38762014	13	2.3	15	89	10	50	37	15	6	40	1.73
38768928--38769097	40	4.3	40	87	3	218	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38774352--38774607	45	5.7	45	78	9	173	20	21	16	42	1.89
38774394--38774607	45	4.8	44	78	9	191	21	19	16	42	1.90
38774533--38774657	45	2.8	45	78	4	126	24	19	13	42	1.87
38777106--38777283	90	2.0	90	81	0	212	34	21	15	28	1.94
38778202--38778259	20	2.9	19	77	12	55	44	1	1	51	1.21
38778218--38778273	20	2.9	19	82	7	69	39	1	5	53	1.34
38778208--38778271	20	3.3	19	82	8	67	40	1	3	54	1.25
38782331--38782374	22	2.0	22	100	0	88	31	9	9	50	1.65
38786492--38786676	43	4.3	43	88	0	244	29	31	17	22	1.96
38786492--38786676	86	2.2	86	89	0	280	29	31	17	22	1.96
38790263--38790315	22	2.4	22	83	3	61	39	33	0	26	1.57
38790297--38790324	14	2.0	14	100	0	56	28	42	0	28	1.56
38790321--38790361	21	2.0	20	85	4	55	41	36	0	21	1.54
38790594--38790633	21	2.0	21	95	5	73	52	30	0	17	1.45
38790593--38790664	15	5.1	14	73	15	58	45	34	0	19	1.51
38791131--38791156	12	2.2	12	100	0	52	46	30	15	7	1.74
38793338--38793373	4	9.0	4	100	0	72	25	0	25	50	1.50
38803113--38803165	23	2.4	22	76	20	56	9	16	1	71	1.21
38803158--38803216	21	2.7	21	77	17	57	8	25	1	64	1.31
38810210--38810248	20	2.0	20	94	0	69	35	7	5	51	1.53
38813439--38813522	27	3.1	27	81	5	91	28	20	16	34	1.94
38813792--38813853	33	1.9	32	87	9	90	32	14	24	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38817566--38817599	16	2.2	15	89	5	50	55	2	0	41	1.15
38830400--38830432	6	5.5	6	100	0	66	84	0	15	0	0.61
38833130--38833159	6	4.8	6	95	4	51	16	30	0	53	1.44
38834863--38834901	19	2.1	19	100	0	78	33	10	25	30	1.89
38837510--38837557	24	2.0	24	95	0	87	35	14	25	25	1.94
38837534--38837716	50	3.7	50	79	8	194	30	20	27	22	1.98
38843338--38843565	50	4.6	49	80	3	215	28	21	27	22	1.99
38843369--38843578	100	2.1	100	82	1	251	27	20	29	22	1.98
38845227--38845401	33	5.3	33	81	2	163	42	14	24	17	1.87
38854368--38854658	50	5.8	50	83	0	296	21	28	22	27	1.99
38875366--38875390	7	3.6	7	100	0	50	16	0	36	48	1.46
38886473--38886662	51	3.8	50	80	3	202	24	16	27	31	1.96
38886664--38886762	46	2.2	43	82	12	119	24	19	24	32	1.97
38897777--38897818	7	6.0	7	88	0	57	19	50	0	30	1.48
38897778--38897819	21	2.0	21	90	9	68	21	47	0	30	1.51
38908759--38908943	51	3.7	50	78	6	203	29	28	17	24	1.97
38908757--38908941	101	1.8	101	88	3	282	30	28	17	24	1.97
38912525--38912555	16	2.0	15	93	6	53	32	32	12	22	1.92
38912784--38912825	21	2.0	21	95	0	75	38	21	0	40	1.53
38919080--38919258	27	6.6	27	79	8	166	26	14	29	30	1.95
38919077--38919258	82	2.2	81	83	3	240	26	14	28	30	1.95
38919796--38919955	79	2.0	79	93	0	275	35	8	22	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38922815--38922912	33	3.0	33	75	0	106	15	23	18	42	1.88
38928318--38928414	27	3.6	27	90	2	140	27	13	28	29	1.94
38950223--38950275	28	1.9	27	84	3	70	49	1	5	43	1.37
38950223--38950282	28	2.2	28	81	3	68	46	1	8	43	1.43
38954815--38954901	27	3.3	27	80	7	81	39	21	17	21	1.93
38957044--38957085	22	2.0	22	86	13	63	54	0	0	45	0.99
38957047--38957080	16	2.2	15	89	5	50	55	0	0	44	0.99
38961101--38961134	12	2.7	13	90	9	61	52	5	32	8	1.56
38961768--38961821	27	2.0	28	85	3	74	46	1	9	42	1.46
38961955--38962243	68	4.2	67	81	9	277	35	16	22	24	1.95
38961954--38962243	136	2.1	136	81	4	343	36	16	22	24	1.94
38967446--38967531	45	1.9	45	87	0	127	41	12	23	22	1.88
38970811--38970931	60	2.0	60	100	0	242	26	14	23	36	1.92
38988136--38988313	27	6.6	27	83	3	205	26	15	28	29	1.96
38988137--38988292	82	1.9	81	88	3	233	26	15	28	29	1.96
38988133--38988313	82	2.2	81	83	2	229	27	15	27	29	1.96
38996199--38996376	27	6.6	27	83	3	205	26	15	28	29	1.96
38996200--38996355	82	1.9	81	88	3	233	26	15	28	29	1.96
38996196--38996376	82	2.2	81	83	2	229	27	15	27	29	1.96
38999687--38999734	18	2.7	18	78	18	55	70	2	0	27	0.98
39000027--39000065	10	3.8	10	86	3	51	35	2	0	61	1.10
39005640--39005774	44	3.1	44	69	14	145	45	20	7	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39005880--39006048	91	1.9	91	89	2	268	28	7	7	56	1.53
39006539--39006578	21	1.9	21	89	0	62	15	20	37	27	1.92
39007494--39007518	12	2.1	12	100	0	50	64	8	0	28	1.22
39018560--39018588	12	2.3	13	94	5	51	82	0	0	17	0.66
39023116--39023154	15	2.4	16	87	8	53	35	0	0	64	0.94
39023566--39023621	21	2.6	22	86	8	71	57	1	0	41	1.09
39038332--39038376	15	2.9	15	80	6	54	62	0	2	35	1.08
39039882--39039965	17	4.9	17	71	0	60	26	10	17	45	1.81
39039892--39039990	51	1.9	51	83	0	126	29	8	17	45	1.77
39042822--39042870	22	2.2	22	100	0	98	32	0	14	53	1.41
39045220--39045285	27	2.5	27	83	13	77	27	6	1	65	1.25
39047220--39047256	19	2.0	20	89	10	60	5	21	0	72	1.04
39047765--39047803	12	3.2	12	88	0	60	15	12	38	33	1.85
39047798--39047943	63	2.3	63	83	2	186	29	21	22	26	1.99
39051201--39051245	13	3.5	13	82	11	65	42	11	15	31	1.82
39051201--39051250	26	1.9	26	95	0	91	42	12	16	30	1.84
39051201--39051256	26	2.2	26	90	0	85	41	14	16	28	1.87
39051796--39051915	57	2.1	57	92	3	197	25	18	24	32	1.97
39051796--39051976	57	3.3	57	82	5	167	23	17	24	35	1.95
39051950--39052089	52	2.6	54	76	8	144	32	20	21	26	1.97
39056103--39056140	19	2.0	19	90	10	60	28	5	0	65	1.14
39059577--39059968	130	3.0	130	89	2	579	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39059577--39060016	130	3.4	130	85	4	555	25	23	20	30	1.99
39060076--39060203	45	2.9	43	74	14	125	22	21	25	31	1.98
39059961--39060330	177	2.1	177	80	0	427	24	25	22	28	2.00
39059948--39060367	88	4.8	88	79	1	410	24	24	23	28	2.00
39060309--39060416	57	1.9	57	88	0	162	18	28	25	26	1.98
39060215--39060512	145	2.1	145	85	2	402	21	26	25	26	1.99
39060360--39060550	88	2.2	88	88	1	276	22	24	25	27	2.00
39067096--39067125	8	3.9	8	95	4	53	63	0	0	36	0.95
39070777--39070841	22	3.0	23	74	19	66	44	13	4	36	1.65
39072213--39072284	30	2.4	29	80	13	83	59	0	2	37	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141