genome.fa.s6.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  81  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23331334--23331593	136	2.0	130	78	7	272	36	3	24	34	1.72
23331637--23331742	54	1.9	55	84	5	144	38	4	19	36	1.73
23331812--23331856	23	2.0	23	86	0	63	35	2	17	44	1.62
23331866--23332018	67	2.4	63	80	6	166	39	5	18	36	1.73
23332147--23332497	58	6.0	59	72	10	265	38	3	18	39	1.68
23332146--23332500	117	3.0	118	77	7	382	37	3	19	39	1.69
23333253--23333300	10	4.8	10	76	0	51	33	0	0	66	0.92
23333238--23333300	30	2.1	30	96	0	117	36	0	0	63	0.95
23333392--23333421	14	2.1	15	93	6	53	26	0	6	66	1.16
23335542--23336141	29	19.8	29	80	14	599	45	31	0	23	1.53
23335626--23335660	5	7.0	5	100	0	70	40	40	0	20	1.52
23335545--23336132	93	5.7	100	72	21	393	45	31	0	22	1.53
23335979--23336043	23	2.8	23	80	2	85	47	33	0	18	1.49
23335752--23336152	64	6.6	60	79	13	421	45	31	0	22	1.53
23336252--23336276	10	2.5	10	100	0	50	44	8	0	48	1.32
23338659--23338697	18	2.2	18	100	0	78	10	43	23	23	1.84
23339102--23339455	125	2.8	126	91	0	584	33	21	15	29	1.94
23340160--23340185	11	2.4	11	100	0	52	38	0	0	61	0.96
23342455--23342506	27	2.0	27	85	11	72	0	34	1	63	1.06
23342714--23342761	13	3.7	13	75	10	53	62	2	0	35	1.07
23343220--23343324	11	10.4	11	71	20	61	37	1	0	60	1.07
23343202--23343326	40	3.2	40	88	3	200	35	1	0	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23343307--23343345	20	2.0	20	89	0	60	38	2	0	58	1.12
23352737--23352831	42	2.3	42	85	5	122	42	5	9	43	1.59
23354882--23355077	105	1.9	101	84	6	259	27	23	15	33	1.95
23355897--23355941	21	2.1	22	84	12	58	66	8	11	13	1.44
23357132--23357329	35	5.8	35	84	5	237	40	17	23	18	1.91
23357132--23357328	67	2.9	68	87	4	267	40	17	23	18	1.91
23357131--23357329	102	2.0	102	93	0	344	40	18	23	18	1.91
23362367--23362413	14	3.4	14	79	5	60	38	29	6	25	1.81
23362367--23362421	13	4.0	14	79	9	51	38	29	7	25	1.83
23362450--23362496	14	3.4	14	79	5	60	14	4	40	40	1.66
23362463--23362514	7	7.6	7	80	4	52	9	1	44	44	1.48
23362450--23362516	27	2.4	28	90	5	109	11	4	41	41	1.62
23362463--23362514	20	2.5	21	78	3	61	9	1	44	44	1.48
23371750--23371785	18	1.9	19	88	5	56	19	5	0	75	1.00
23376833--23376916	3	28.0	3	83	0	60	60	10	2	26	1.42
23377553--23377666	51	2.2	51	87	7	169	30	23	14	31	1.94
23377578--23377753	87	2.0	87	83	2	219	30	22	18	28	1.97
23377553--23377804	138	1.8	138	82	0	324	28	23	17	30	1.97
23377796--23377836	21	2.0	21	90	0	64	21	29	7	41	1.80
23377746--23377887	72	2.0	72	81	0	167	26	25	14	33	1.94
23377821--23377927	51	2.1	51	85	0	142	31	20	14	33	1.92
23377839--23378014	87	2.0	86	84	4	228	31	22	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23377548--23378987	261	5.5	260	86	0	1917	28	24	16	30	1.96
23377817--23378987	123	8.9	135	70	12	774	28	24	16	30	1.96
23378076--23378175	51	2.0	51	93	0	173	31	21	14	34	1.92
23378074--23378188	51	2.3	51	87	4	171	30	21	13	34	1.91
23378316--23378358	21	2.0	21	86	0	59	20	23	6	48	1.73
23378337--23378449	51	2.2	51	88	0	172	30	23	13	32	1.93
23378412--23378485	36	2.1	36	86	0	103	31	21	20	27	1.98
23378361--23378536	87	2.0	87	85	0	235	31	24	15	27	1.96
23378460--23378594	51	2.6	51	79	0	144	29	25	14	30	1.95
23377542--23378987	522	2.8	522	90	0	2174	28	24	16	30	1.96
23378597--23378710	51	2.2	51	84	0	156	28	25	14	30	1.95
23378673--23378746	36	2.1	36	92	5	123	31	21	20	27	1.98
23378637--23378797	87	1.9	87	84	2	216	28	23	16	31	1.96
23378708--23378851	51	2.8	51	75	6	139	27	22	17	32	1.96
23378860--23378971	51	2.2	51	81	0	134	29	26	15	28	1.96
23379301--23379364	24	2.7	24	85	0	92	31	25	9	34	1.87
23380297--23380325	12	2.5	12	94	5	51	20	0	0	79	0.74
23380318--23380451	44	3.0	44	79	8	155	16	23	17	42	1.88
23380318--23380447	46	2.9	45	79	8	149	16	23	16	43	1.88
23384924--23384956	17	1.9	17	93	0	57	60	12	3	24	1.46
23386826--23386865	17	2.3	16	87	12	53	15	0	12	72	1.12
23388351--23388436	41	2.1	41	93	0	145	30	12	20	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23400373--23401061	342	2.0	344	92	0	1157	30	15	24	28	1.96
23400940--23401496	304	1.8	304	98	0	1071	26	16	28	28	1.97
23407126--23408028	89	10.0	89	83	7	1045	31	18	22	27	1.97
23407126--23408028	178	5.0	178	86	5	1210	31	18	22	27	1.97
23407561--23407673	60	1.9	59	83	5	147	34	15	23	25	1.95
23407621--23408028	44	9.3	44	73	6	308	32	17	22	27	1.96
23407339--23407896	282	2.0	282	92	0	927	31	18	23	26	1.97
23412546--23412585	21	1.9	21	94	0	71	60	0	0	40	0.97
23412546--23412594	11	4.3	12	75	19	52	59	0	0	40	0.98
23412568--23412679	11	10.4	11	69	18	58	58	0	2	39	1.12
23412557--23412668	38	3.0	37	76	18	124	59	0	1	38	1.08
23413460--23413536	34	2.3	35	81	4	95	37	35	6	20	1.79
23413498--23413528	14	2.2	14	94	0	53	45	38	0	16	1.47
23416607--23416646	13	3.1	13	88	0	53	27	7	22	42	1.80
23425343--23425376	13	2.6	13	95	0	59	44	0	11	44	1.40
23425927--23425973	6	7.8	6	95	0	76	44	0	4	51	1.21
23425919--23426062	58	2.3	61	79	12	154	42	2	5	50	1.37
23429518--23429560	20	2.2	20	100	0	86	62	4	4	27	1.35
23430100--23430138	19	2.2	17	86	13	53	28	0	5	66	1.12
23432550--23432628	28	2.8	26	80	16	70	39	1	0	59	1.06
23438186--23438232	22	2.1	22	84	0	58	14	6	23	55	1.63
23441061--23441699	94	6.8	94	82	2	690	26	19	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23441055--23441699	282	2.3	282	84	1	853	26	19	18	35	1.95
23441543--23441803	144	1.8	144	84	1	362	26	18	20	34	1.96
23441541--23441844	144	2.1	144	81	3	353	26	19	20	33	1.96
23445017--23445061	21	2.1	21	87	0	63	15	17	20	46	1.84
23449576--23449721	37	4.0	37	93	1	242	24	21	16	36	1.94
23449685--23449953	46	5.6	46	84	10	340	28	22	14	34	1.93
23449728--23449947	52	4.3	52	85	8	299	27	22	14	35	1.93
23449685--23449953	98	2.7	98	93	0	457	28	22	14	34	1.93
23453082--23453151	28	2.6	28	82	14	78	64	4	1	30	1.21
23455043--23455139	51	1.9	51	84	0	131	29	25	15	28	1.96
23454883--23455597	169	4.2	169	87	2	999	27	26	15	29	1.96
23455673--23455848	44	4.0	45	85	6	243	31	25	17	26	1.97
23455671--23455848	89	2.0	87	86	4	250	32	25	16	25	1.97
23458848--23458900	25	2.2	25	83	10	65	62	7	11	18	1.52
23465443--23465484	22	1.9	21	85	9	57	59	4	2	33	1.31
23466391--23466453	31	2.1	30	82	14	76	63	4	0	31	1.15
23475406--23475445	18	2.3	17	86	4	53	62	2	0	35	1.09
23476361--23476431	14	5.4	14	68	19	53	53	2	0	43	1.15
23480264--23480318	25	2.2	25	84	9	69	25	21	20	32	1.97
23483021--23483050	16	1.9	15	93	6	51	46	0	13	40	1.43
23483893--23484061	30	5.7	30	78	4	144	36	11	26	24	1.90
23483843--23484063	89	2.5	89	84	1	273	36	12	27	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23490162--23490205	21	2.1	21	91	0	70	20	29	20	29	1.98
23503162--23503528	183	2.0	183	99	0	725	46	12	11	29	1.77
23503889--23503951	31	2.0	31	87	0	90	41	12	12	33	1.81
23510228--23510266	17	2.3	17	86	0	51	12	35	30	20	1.90
23511490--23511515	13	2.0	13	100	0	52	30	0	15	53	1.42
23523468--23523593	62	2.0	62	100	0	252	33	19	7	39	1.80
23524000--23524043	22	2.0	22	90	0	70	29	22	18	29	1.97
23530193--23530241	25	2.0	25	83	0	62	32	18	12	36	1.88
23530574--23530621	18	2.7	18	81	9	62	37	16	4	41	1.68
23534194--23534292	28	3.5	28	93	5	164	39	13	0	47	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141