genome.fa.s6.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  94  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26723511--26723547	12	3.2	12	84	7	58	32	10	0	56	1.34
26723687--26723724	19	1.9	19	89	5	58	39	5	2	52	1.38
26726901--26726929	9	3.2	9	100	0	58	20	0	34	44	1.52
26731955--26731998	5	9.2	5	81	18	58	40	0	0	59	0.98
26731956--26731998	19	2.3	19	92	8	70	41	0	0	58	0.98
26732008--26732054	16	2.9	16	84	9	60	74	2	19	4	1.09
26732011--26732070	25	2.3	26	76	21	63	70	5	21	3	1.22
26732100--26732127	4	7.0	4	100	0	56	75	0	25	0	0.81
26733093--26733259	39	4.2	39	80	11	176	20	18	21	38	1.93
26733124--26733268	45	3.4	43	82	7	172	20	17	21	40	1.91
26733243--26733279	6	5.8	6	90	9	56	21	16	16	45	1.84
26735154--26735266	56	2.0	56	96	0	208	37	9	28	24	1.87
26736076--26736169	44	2.1	45	94	4	172	54	2	19	24	1.55
26736483--26736566	41	2.0	41	100	0	168	54	14	11	19	1.70
26738675--26738761	40	2.2	40	83	6	106	34	5	19	40	1.76
26738936--26739018	39	2.2	39	86	6	116	19	20	21	38	1.93
26738936--26739108	45	4.2	39	76	18	152	19	19	21	38	1.93
26738963--26739117	45	3.4	45	89	0	247	19	18	21	41	1.91
26739092--26739128	6	5.8	6	90	9	56	21	16	16	45	1.84
26750078--26750139	31	2.0	31	90	6	99	40	6	16	37	1.74
26752823--26752908	45	1.9	45	92	0	145	29	19	24	26	1.99
26757683--26757726	11	4.1	11	77	16	56	13	27	18	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26757694--26757787	21	4.5	21	89	5	129	17	27	15	39	1.90
26762546--26762594	20	2.3	21	79	6	55	12	10	4	73	1.22
26762546--26762602	23	2.7	22	81	13	75	12	8	5	73	1.23
26762834--26762892	26	2.2	26	85	11	84	62	3	1	32	1.21
26768516--26768615	17	5.9	17	80	2	94	37	32	15	16	1.89
26768803--26768944	70	2.0	70	88	0	212	31	10	11	46	1.74
26772000--26772843	27	31.4	27	80	4	758	19	17	20	42	1.89
26771999--26772843	81	10.5	80	81	2	863	19	17	20	42	1.89
26771999--26772843	54	15.7	53	81	3	863	19	17	20	42	1.89
26779082--26779108	12	2.2	12	100	0	54	29	40	22	7	1.81
26782697--26782733	12	3.1	12	92	0	65	54	35	10	0	1.36
26782697--26782733	6	6.2	6	90	0	56	54	35	10	0	1.36
26784721--26784764	18	2.4	19	85	11	56	2	9	6	81	0.94
26785832--26785904	30	2.4	30	83	0	92	13	27	38	20	1.90
26794735--26794784	24	2.1	24	100	0	100	42	16	24	18	1.89
26795429--26795463	18	1.9	18	94	0	61	28	14	11	45	1.79
26801473--26801579	51	2.1	51	85	3	144	29	29	16	23	1.96
26825438--26825515	35	2.2	36	84	6	97	51	2	7	38	1.44
26825498--26825557	30	2.1	28	84	6	75	45	8	10	36	1.68
26826357--26826421	6	10.5	6	80	5	67	75	1	4	18	1.05
26827187--26827325	44	3.2	44	68	10	131	22	23	20	33	1.97
26827167--26827355	87	2.2	87	92	0	306	23	20	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26827223--26827384	42	3.8	41	71	11	137	22	22	22	32	1.98
26827396--26828713	132	10.0	132	94	0	2109	28	25	18	27	1.98
26827567--26828696	44	25.7	43	64	10	136	28	25	18	27	1.98
26827437--26828598	88	13.2	88	63	11	268	27	25	18	28	1.98
26828715--26828869	50	3.1	50	90	0	247	30	16	18	34	1.94
26828715--26829267	100	5.6	98	76	7	470	27	19	20	32	1.97
26828810--26829267	99	4.6	99	77	10	416	26	20	20	31	1.97
26828715--26829267	50	11.1	50	69	7	194	27	19	20	32	1.97
26828810--26829291	199	2.4	199	90	0	759	27	20	21	31	1.98
26830159--26830191	12	2.8	12	90	4	50	0	15	3	81	0.80
26830142--26830191	17	3.0	16	85	8	64	2	14	4	80	0.95
26834011--26834088	35	2.2	36	84	6	97	51	2	7	38	1.44
26834071--26834130	30	2.1	28	84	6	75	45	8	10	36	1.68
26834937--26834993	6	9.3	6	78	3	60	73	1	3	21	1.07
26836869--26836921	14	3.6	14	80	7	61	35	0	13	50	1.41
26845086--26845157	35	2.1	35	94	0	126	16	16	27	38	1.90
26846404--26846445	21	2.0	20	82	13	50	21	7	21	50	1.72
26847858--26847897	19	2.1	19	85	0	53	17	27	32	22	1.96
26848925--26848957	15	2.3	15	89	5	50	45	3	0	51	1.16
26849509--26849552	22	2.0	23	82	13	56	20	4	11	63	1.44
26866739--26866918	44	4.1	44	72	2	146	33	16	21	28	1.95
26867089--26867182	44	2.1	45	92	2	154	28	13	27	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26869824--26869988	89	1.9	89	88	2	251	36	12	16	33	1.87
26880220--26880474	45	5.6	44	78	9	192	22	19	13	44	1.85
26887587--26887639	26	2.0	27	85	7	72	1	22	5	69	1.19
26889576--26889613	20	2.0	20	85	10	53	28	5	21	44	1.73
26895363--26895448	41	2.1	41	95	0	154	18	8	17	55	1.65
26897837--26898073	85	2.8	85	82	1	296	20	28	29	21	1.98
26897943--26898069	42	3.0	41	73	10	121	17	27	31	23	1.97
26912166--26912201	18	1.9	19	94	5	65	27	8	33	30	1.86
26912919--26913137	42	5.2	42	66	9	131	20	25	31	23	1.98
26912931--26913157	85	2.7	84	84	4	285	18	24	32	24	1.97
26912843--26913157	170	1.9	170	81	1	389	22	23	30	23	1.99
26912945--26913157	43	5.0	42	67	11	128	19	25	31	23	1.98
26913018--26913176	85	1.9	85	84	2	212	20	26	30	22	1.98
26913177--26913311	43	3.1	43	70	12	132	22	24	32	20	1.98
26913174--26913332	86	1.8	86	89	0	246	21	25	31	21	1.98
26913811--26913915	52	2.0	53	84	1	140	33	17	15	34	1.91
26914288--26914354	25	2.7	25	88	9	109	22	28	11	37	1.90
26919547--26919589	22	1.9	23	86	13	63	27	13	20	37	1.91
26921386--26921424	13	2.7	15	88	7	55	5	23	5	66	1.32
26938583--26938612	5	6.0	5	100	0	60	40	0	0	60	0.97
26939607--26939695	25	3.6	25	85	0	124	28	22	21	28	1.99
26942687--26942775	45	2.0	45	86	4	126	51	19	6	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26956181--26956272	25	3.7	25	79	0	94	32	21	16	29	1.95
26958576--26958626	21	2.4	21	83	0	66	39	11	25	23	1.89
26965396--26965423	13	2.2	13	100	0	56	42	14	0	42	1.45
26969694--26969754	28	2.2	28	88	5	88	52	3	4	39	1.39
26970296--26970356	25	2.5	24	74	12	61	54	1	6	37	1.37
26975693--26975729	9	4.1	9	89	0	56	29	13	13	43	1.82
26976468--26976556	25	3.6	25	83	3	117	29	23	22	24	1.99
26979606--26979727	35	3.5	35	78	3	122	27	29	14	27	1.95
26979599--26979772	69	2.5	69	75	7	156	25	28	17	28	1.97
26986588--26986626	19	2.1	19	85	9	53	48	2	0	48	1.15
26986810--26986843	5	6.8	5	93	0	59	61	2	0	35	1.11
26994772--26994895	34	3.6	34	76	11	117	33	18	25	22	1.97
26994772--26994957	35	5.4	34	78	8	162	31	18	27	22	1.97
26994772--26994927	69	2.3	69	86	0	213	32	17	26	23	1.97
26998824--26998851	7	4.0	7	100	0	56	85	0	14	0	0.59
27001710--27002108	45	8.8	45	70	13	178	21	19	15	43	1.87
27001710--27001881	45	3.8	46	83	3	179	19	19	13	47	1.83
27008749--27008803	22	2.5	22	84	0	74	38	18	20	23	1.93
27013594--27013791	44	4.6	43	76	10	154	28	16	24	30	1.96
27013622--27013835	43	4.9	45	77	13	173	28	14	24	31	1.95
27013645--27013835	85	2.2	86	80	9	212	28	15	25	30	1.95
27017227--27017656	27	16.2	27	78	7	366	19	15	20	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27017227--27017656	54	8.1	54	79	6	430	19	15	20	44	1.87
27021510--27021632	42	2.9	42	78	4	124	15	31	27	25	1.96
27021456--27021726	146	1.9	146	88	3	411	19	28	24	26	1.99
27024308--27024412	54	2.0	53	84	1	138	24	23	29	21	1.99
27030885--27030913	5	5.8	5	100	0	58	62	17	0	20	1.33
27044488--27044695	64	3.3	63	74	9	188	23	25	20	31	1.98
27052889--27052931	22	2.0	22	85	0	59	53	2	16	27	1.55
27054824--27054863	22	2.0	21	85	14	57	42	0	0	57	0.98
27055129--27055163	18	2.0	17	94	5	61	57	0	0	42	0.99
27056127--27056378	126	2.0	126	98	1	488	23	46	0	30	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141