genome.fa.s6.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  51  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15361349--15361519	66	2.6	65	84	4	209	39	18	28	12	1.88
15361490--15361560	21	3.4	21	76	3	63	33	16	42	7	1.76
15361863--15362028	43	3.8	42	77	12	174	20	15	31	31	1.94
15361882--15362049	43	3.9	43	74	8	153	20	17	30	30	1.96
15362269--15362311	22	2.0	22	95	0	77	41	27	20	9	1.83
15364058--15364095	17	2.2	18	85	4	51	44	2	13	39	1.57
15369715--15369834	13	9.2	13	77	5	98	35	18	1	44	1.60
15369715--15369811	40	2.5	39	81	6	124	38	17	2	42	1.61
15369700--15369811	53	2.1	53	83	3	136	37	17	1	42	1.60
15377624--15378024	40	9.9	41	86	3	519	19	17	31	31	1.95
15377624--15378024	81	5.0	81	85	4	515	19	17	31	31	1.95
15377630--15378024	121	3.3	120	86	5	462	19	17	31	31	1.95
15378183--15378238	27	2.1	27	83	6	71	12	35	7	44	1.70
15381526--15381585	18	3.4	18	64	13	52	43	6	10	40	1.64
15381915--15381956	22	1.9	22	95	0	75	40	28	21	9	1.84
15393197--15393267	34	2.1	34	94	0	124	23	8	28	39	1.84
15404476--15404790	44	7.2	43	65	15	162	26	24	25	23	2.00
15404462--15404951	88	5.6	88	88	2	702	26	23	25	23	2.00
15406718--15406748	12	2.6	12	94	0	53	51	3	0	45	1.17
15414869--15414972	52	2.0	51	82	14	124	33	0	8	56	1.36
15430475--15430517	21	2.0	21	86	0	59	55	9	11	23	1.64
15441554--15441971	175	2.4	175	85	3	545	30	14	8	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15443373--15443412	21	1.9	21	89	0	62	47	0	5	47	1.24
15447312--15447373	32	1.9	32	96	0	115	25	27	16	30	1.96
15449164--15449229	29	2.3	29	91	0	105	25	7	27	39	1.83
15451735--15451779	6	7.5	6	85	9	56	15	37	2	44	1.59
15452192--15452237	23	2.0	23	86	0	65	26	30	10	32	1.90
15454081--15454137	16	3.6	16	95	0	87	29	0	36	33	1.58
15454382--15454416	18	2.0	17	88	5	52	54	0	0	45	0.99
15454341--15454584	79	3.1	79	65	17	220	47	3	2	46	1.33
15454516--15454557	15	2.7	16	82	14	52	52	2	0	45	1.13
15454269--15454582	154	2.0	156	96	1	578	44	3	5	47	1.41
15454525--15454566	15	2.9	15	82	10	52	52	0	0	47	1.00
15454514--15454811	120	2.5	121	93	3	512	50	4	2	42	1.35
15454635--15454686	15	3.6	15	80	12	56	53	1	0	44	1.11
15454754--15455036	93	3.0	94	82	9	283	48	3	3	44	1.35
15454842--15455036	93	2.1	92	88	4	286	47	4	4	44	1.41
15456804--15456854	24	2.1	24	100	0	102	33	7	23	35	1.84
15457983--15458025	18	2.4	18	80	7	52	51	0	2	46	1.13
15458661--15458699	20	2.0	20	90	10	62	46	2	0	51	1.14
15458673--15458706	16	2.1	17	88	5	52	38	8	0	52	1.33
15460873--15460937	29	2.2	29	97	0	121	38	3	27	30	1.72
15461926--15461968	19	2.3	18	84	11	52	53	4	0	41	1.21
15464983--15465011	5	5.8	5	100	0	58	0	0	37	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15472372--15472405	14	2.5	14	90	4	52	0	26	2	70	1.01
15473114--15473170	30	1.9	30	92	0	96	40	0	40	19	1.51
15473482--15473617	71	1.9	71	87	3	202	41	7	11	39	1.68
15473899--15473927	10	3.0	10	95	5	51	93	0	6	0	0.36
15473899--15473932	17	2.0	17	88	0	50	88	0	11	0	0.52
15475331--15475402	31	2.4	31	81	11	78	55	8	8	27	1.58
15478997--15479057	32	1.9	32	86	0	86	52	6	14	26	1.66
15479108--15479275	29	5.7	28	76	7	147	56	6	17	19	1.62
15479062--15479252	58	3.3	57	79	13	164	58	5	14	20	1.57
15480842--15480907	33	2.0	33	96	0	123	34	13	15	36	1.87
15483504--15483542	19	2.1	19	95	0	69	30	35	15	17	1.91
15492461--15492669	92	2.3	91	86	5	278	45	3	3	46	1.39
15492597--15492644	26	1.9	25	84	16	64	45	0	2	52	1.12
15492723--15492935	66	3.4	62	67	20	174	41	3	6	48	1.44
15492685--15492977	120	2.4	120	94	2	509	42	2	4	50	1.38
15492810--15492861	15	3.6	15	80	12	56	44	0	1	53	1.11
15492939--15492980	15	2.7	16	82	14	52	45	0	2	52	1.13
15492930--15492971	15	2.9	15	82	10	52	47	0	0	52	1.00
15492914--15493230	157	2.0	157	97	0	598	47	5	3	44	1.41
15493083--15493117	18	2.0	17	88	5	52	45	0	0	54	0.99
15492915--15493153	75	3.1	75	64	18	191	46	3	3	46	1.35
15497059--15497085	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15497141--15497179	16	2.4	16	80	20	53	30	0	7	61	1.24
15498522--15498561	20	2.0	20	90	0	62	50	12	10	27	1.72
15498510--15498576	34	1.9	35	90	3	109	47	11	7	32	1.68
15513981--15514064	34	2.5	33	83	11	98	40	0	17	41	1.50
15514152--15514525	126	3.0	125	86	2	543	36	17	18	27	1.93
15518051--15518087	18	2.1	18	94	0	65	43	10	27	18	1.83
15519386--15519417	11	2.9	11	90	0	55	37	25	28	9	1.87
15520347--15520380	14	2.5	14	95	4	61	50	35	0	14	1.44
15521751--15521782	11	2.9	11	90	0	55	37	25	28	9	1.87
15522712--15522745	14	2.5	14	95	4	61	50	35	0	14	1.44
15525540--15525588	18	2.7	17	78	12	53	38	2	2	57	1.22
15525540--15525591	19	2.8	18	85	8	61	40	1	3	53	1.30
15528050--15528123	7	10.6	7	78	12	64	56	0	14	28	1.39
15528038--15528117	41	2.0	41	82	9	101	53	1	13	31	1.48
15528255--15528289	15	2.3	15	90	0	52	25	14	31	28	1.95
15530545--15530585	21	2.0	21	85	0	55	39	17	21	21	1.93
15536400--15536451	27	1.9	27	84	0	68	65	1	25	7	1.30
15549011--15549042	16	2.0	16	93	0	55	53	9	6	31	1.58
15555840--15555922	38	2.1	38	80	8	87	22	8	6	62	1.45
15559762--15559978	108	2.0	108	94	0	380	29	15	26	29	1.96
15561245--15561299	27	2.0	27	100	0	110	32	10	18	38	1.85
15562649--15562673	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15562834--15562903	9	7.8	9	90	0	95	38	25	10	25	1.87
15563303--15563481	56	3.2	56	81	3	225	35	13	13	36	1.85
15563303--15563488	84	2.2	85	84	5	236	36	12	15	36	1.85
15563302--15563462	28	5.8	28	81	7	175	34	14	15	35	1.88
15563333--15563481	28	5.3	27	79	7	138	36	12	13	38	1.82
15563305--15563503	56	3.5	55	75	9	179	35	12	15	36	1.85
15575182--15575600	36	11.4	37	82	4	420	30	14	19	34	1.92
15575186--15575600	73	5.6	74	80	6	441	30	14	20	34	1.92
15575225--15575600	146	2.6	146	84	2	486	30	14	20	34	1.92
15577568--15577927	188	1.9	188	97	0	684	38	12	17	31	1.88
15580134--15580232	47	2.1	47	90	0	153	18	13	22	46	1.83
15580743--15580814	36	2.0	36	81	8	83	34	11	9	44	1.73
15582001--15582053	27	2.0	26	88	3	79	37	1	9	50	1.46
15582048--15582108	29	2.1	30	96	3	115	45	3	3	47	1.35
15591696--15591766	20	3.6	18	81	14	79	40	12	7	39	1.70
15595728--15595807	31	2.6	31	93	0	133	18	25	38	17	1.92
15607504--15607533	12	2.6	11	90	10	51	70	0	3	26	1.03
15610655--15610792	50	2.8	48	83	8	161	1	15	13	70	1.24
15610711--15610799	39	2.4	37	83	9	119	1	11	14	73	1.16
15610710--15610805	9	10.4	9	78	7	86	1	10	14	73	1.14
15611023--15611052	12	2.6	11	90	10	51	70	0	3	26	1.03
15611357--15611452	31	3.1	31	93	3	165	44	13	10	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15621064--15621168	39	2.6	39	86	5	122	24	22	27	24	2.00
15621024--15621187	40	4.1	40	80	12	169	25	23	27	24	2.00
15621024--15621174	79	1.9	80	82	6	191	25	23	27	23	2.00
15636229--15636284	3	18.7	3	78	7	60	33	7	30	28	1.84
15639624--15640030	207	1.9	209	90	2	649	26	23	16	33	1.96
15641701--15641741	17	2.4	17	91	0	64	46	39	12	2	1.54
15650028--15650088	25	2.4	25	75	5	61	32	21	29	16	1.95
15650077--15650116	18	2.2	18	86	0	53	27	22	35	15	1.94
15650300--15650384	44	1.9	44	82	0	107	31	15	31	21	1.94
15658529--15658572	22	2.0	22	95	0	79	20	27	25	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141