genome.fa.s6.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  52  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15661086--15661110	13	1.9	13	100	0	50	8	0	24	68	1.16
15662641--15662878	41	5.8	41	98	0	449	29	21	22	26	1.99
15663095--15663158	33	2.0	32	90	3	101	26	9	25	39	1.86
15663102--15663175	33	2.3	33	80	2	87	28	8	25	37	1.84
15663993--15664022	14	2.1	14	100	0	60	26	0	0	73	0.84
15665703--15665923	50	4.6	49	76	6	188	24	29	18	27	1.98
15665848--15666022	94	1.9	94	83	2	228	24	28	18	28	1.98
15666353--15666410	30	1.9	30	89	0	89	27	25	12	34	1.91
15670104--15670266	52	3.2	50	80	11	140	31	25	15	26	1.96
15670122--15670266	53	2.8	52	86	1	173	31	26	15	26	1.95
15670134--15670266	52	2.5	53	86	1	169	30	26	15	27	1.96
15673080--15673604	41	12.8	41	97	1	973	29	21	22	27	1.99
15673819--15673882	33	2.0	32	90	3	101	26	9	25	39	1.86
15673826--15673899	33	2.3	33	80	2	87	28	8	25	37	1.84
15675607--15675676	16	4.5	15	70	10	52	38	2	0	58	1.13
15675608--15675676	31	2.2	31	85	10	88	39	2	0	57	1.13
15698680--15698737	30	2.0	29	90	6	91	39	10	3	46	1.55
15698768--15698806	20	2.0	20	85	10	53	28	2	2	66	1.18
15700765--15701484	360	2.0	360	96	0	1341	27	16	23	31	1.96
15710449--15710667	102	2.1	107	80	8	245	24	15	8	51	1.72
15711121--15711352	42	5.5	42	70	17	122	29	19	23	27	1.98
15711249--15711352	44	2.4	42	84	6	129	26	19	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15711253--15711770	252	2.1	252	89	1	788	30	18	24	26	1.98
15713402--15713461	25	2.5	23	81	8	66	38	6	3	51	1.45
15713404--15713460	23	2.4	23	85	2	69	36	7	3	52	1.46
15713532--15713586	28	2.0	27	86	10	76	40	10	3	45	1.57
15713619--15713656	20	1.9	20	84	10	51	23	2	5	68	1.23
15715733--15715788	28	2.0	28	82	3	67	26	19	10	42	1.84
15723423--15723447	5	5.0	5	100	0	50	40	0	20	40	1.52
15726589--15726633	19	2.4	19	88	3	65	22	37	2	37	1.67
15726593--15726633	9	4.4	9	81	6	55	24	39	2	34	1.69
15728616--15728814	70	2.8	70	80	6	184	27	23	22	26	2.00
15729857--15729904	3	16.0	3	100	0	96	33	0	0	66	0.92
15731996--15732130	43	3.1	43	77	4	137	32	22	16	28	1.95
15735537--15735595	28	2.1	27	84	3	73	54	22	3	20	1.59
15735922--15735952	15	2.1	15	100	0	62	12	25	41	19	1.87
15736117--15736154	6	6.2	6	90	3	58	0	60	0	39	0.97
15736119--15736154	18	2.0	18	100	0	72	0	61	0	38	0.96
15739189--15739366	61	3.0	60	71	10	166	43	1	3	51	1.30
15739294--15739349	15	4.0	15	73	17	57	44	0	0	55	0.99
15739342--15739382	18	2.4	17	84	11	57	41	2	2	53	1.27
15739546--15739600	21	2.6	21	88	8	85	27	38	9	25	1.86
15739686--15739725	21	1.9	21	84	0	53	52	27	0	20	1.46
15739755--15739815	7	8.6	7	74	3	59	49	22	1	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15739901--15739997	40	2.4	40	83	5	133	25	24	20	28	1.99
15739832--15740153	154	2.1	154	82	5	382	28	22	17	31	1.96
15740119--15740193	39	1.9	38	89	5	114	24	18	20	37	1.94
15740251--15740386	39	3.5	39	78	10	152	27	21	22	28	1.99
15740251--15740396	79	1.8	79	81	8	181	27	21	22	28	1.99
15748330--15748373	20	2.2	20	100	0	88	56	9	0	34	1.31
15749573--15749616	20	2.2	20	100	0	88	56	9	0	34	1.31
15758058--15758196	42	3.3	41	82	6	163	29	26	16	27	1.97
15759950--15760065	42	2.7	43	83	1	144	30	26	18	24	1.98
15762890--15763142	70	3.6	70	81	2	301	28	21	22	26	1.99
15763046--15763142	36	2.8	34	68	11	88	27	21	25	24	1.99
15763373--15763410	18	2.1	18	95	0	67	18	34	18	28	1.95
15764334--15764368	18	1.9	18	94	0	61	28	11	5	54	1.59
15764335--15764373	18	2.2	18	86	4	53	30	7	5	56	1.49
15777106--15777558	70	6.5	70	81	2	453	32	23	17	26	1.97
15786534--15786613	27	3.0	27	100	0	160	18	25	30	26	1.98
15786432--15786685	131	2.0	129	92	1	427	20	21	27	30	1.98
15786639--15786794	79	1.9	81	88	5	235	23	19	25	31	1.98
15790382--15791661	641	2.0	641	99	0	2533	31	12	23	31	1.92
15796518--15796561	22	2.0	21	83	12	54	40	0	0	59	0.98
15798099--15798139	10	3.9	10	84	12	55	36	0	2	60	1.10
15799215--15799292	39	2.0	39	100	0	156	25	7	23	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15811706--15811746	22	1.9	22	85	5	57	53	7	0	39	1.29
15814606--15814645	21	1.9	21	84	0	53	47	17	20	15	1.83
15814669--15814731	21	3.0	21	73	0	63	42	19	20	17	1.89
15820846--15820925	28	2.9	28	100	0	160	32	23	18	25	1.97
15825997--15826087	45	2.0	45	93	0	155	40	15	14	29	1.86
15834508--15834554	5	9.2	5	80	13	51	36	14	25	23	1.93
15834909--15834968	30	2.0	31	90	3	95	41	0	38	20	1.52
15835258--15835288	9	3.4	9	90	0	53	38	22	12	25	1.90
15850539--15850574	18	2.1	18	89	5	56	13	27	44	13	1.82
15853313--15853346	14	2.2	16	90	10	54	41	2	0	55	1.15
15856679--15856707	11	2.6	11	100	0	58	27	37	0	34	1.57
15856715--15856775	26	2.2	26	82	11	68	34	1	4	59	1.29
15859706--15859995	126	2.3	125	91	0	463	26	20	20	32	1.97
15860028--15860303	95	2.9	94	81	6	333	42	18	2	36	1.65
15862571--15862618	19	2.4	22	83	13	59	35	0	6	58	1.23
15863192--15863221	10	3.1	10	90	9	53	46	0	0	53	1.00
15863248--15863294	21	2.2	21	84	0	58	21	0	23	55	1.44
15864602--15864651	22	2.4	21	86	6	66	54	6	0	40	1.25
15866083--15866281	43	4.7	43	86	3	260	26	30	18	25	1.98
15866083--15866281	85	2.3	85	85	5	258	26	30	18	25	1.98
15870445--15870667	41	5.4	41	85	1	313	30	31	20	17	1.96
15870432--15870667	123	1.9	123	90	1	375	29	31	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15873080--15873110	16	1.9	16	93	0	53	41	3	22	32	1.70
15877191--15877393	63	3.2	63	77	7	198	23	25	24	26	2.00
15883654--15883678	12	2.1	12	100	0	50	52	0	0	48	1.00
15887011--15887045	17	2.1	17	89	10	54	28	0	2	68	1.04
15895586--15895748	61	2.7	61	88	1	247	28	21	15	34	1.94
15895874--15896013	53	2.6	53	87	1	199	27	25	12	35	1.91
15899278--15899481	87	2.3	87	83	1	257	28	22	14	34	1.93
15907075--15907101	10	2.7	10	100	0	54	48	22	18	11	1.79
15908495--15908536	21	2.0	21	85	0	57	26	26	19	28	1.98
15910991--15911055	29	2.3	29	84	7	80	63	0	6	30	1.19
15922087--15922147	18	3.4	18	77	8	70	39	0	8	52	1.31
15922079--15922147	36	1.9	36	87	0	102	39	0	7	53	1.29
15926955--15927176	41	5.4	41	85	3	286	34	15	29	20	1.94
15926955--15927176	123	1.8	123	87	3	331	34	15	29	20	1.94
15929079--15929383	27	11.3	27	77	12	142	29	20	11	38	1.88
15929080--15929447	54	6.8	52	79	7	273	29	21	10	38	1.87
15929134--15929447	27	11.6	27	83	2	344	30	21	9	38	1.86
15929534--15929561	14	2.0	14	100	0	56	42	21	7	28	1.79
15936016--15936059	5	8.8	5	89	0	70	40	0	22	36	1.54
15936016--15936063	25	1.9	25	100	0	96	41	0	25	33	1.55
15936358--15936408	25	2.0	25	92	0	84	11	25	23	39	1.89
15936488--15936555	26	2.6	26	81	9	84	22	25	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15936578--15936667	24	3.8	23	75	11	67	18	25	18	36	1.94
15944253--15944336	24	3.5	24	81	4	89	17	29	20	32	1.96
15944193--15944392	25	8.1	25	69	12	94	20	26	20	33	1.97
15947853--15947892	19	2.3	18	87	12	57	35	32	7	25	1.84
15953768--15953820	23	2.3	23	87	6	72	47	7	0	45	1.31
15953905--15953934	16	1.9	16	93	6	53	40	0	3	56	1.16
15953954--15954004	13	4.0	13	78	12	52	52	1	0	45	1.12
15955847--15955902	21	2.8	19	84	10	85	35	10	17	35	1.85
15960506--15960950	120	3.7	120	97	0	829	44	0	5	48	1.32
15963453--15963595	50	2.8	50	83	1	178	20	31	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141