genome.fa.s6.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  78  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22428076--22428161	25	3.4	25	78	12	88	38	0	1	60	1.04
22428362--22428471	54	2.0	54	100	0	220	34	7	24	33	1.83
22430247--22430340	47	2.0	47	89	4	145	34	6	26	32	1.82
22433473--22433524	26	2.0	26	85	7	70	25	3	9	61	1.44
22433515--22433571	24	2.3	24	79	8	62	36	0	7	56	1.27
22440749--22440848	47	2.1	47	90	5	159	34	8	26	32	1.85
22453787--22453814	14	2.0	14	100	0	56	14	14	21	50	1.78
22455881--22456002	61	2.0	61	100	0	244	29	13	21	36	1.91
22456195--22456234	14	3.0	13	85	14	55	67	0	0	32	0.91
22456195--22456227	12	2.5	13	90	9	50	72	0	0	27	0.85
22459895--22459933	14	2.7	15	92	4	62	43	30	2	23	1.67
22462990--22463071	26	3.2	26	98	0	155	30	17	18	34	1.94
22467164--22467202	18	2.1	19	86	13	55	5	17	0	76	0.96
22470480--22470512	2	16.5	2	93	0	57	0	48	3	48	1.17
22485939--22486005	35	1.9	35	87	3	100	31	10	13	44	1.77
22485954--22485993	20	2.0	20	85	0	53	27	12	12	47	1.77
22499162--22499257	43	2.2	43	96	0	174	23	29	19	27	1.99
22499266--22499403	21	6.5	21	81	9	138	9	25	26	39	1.86
22502145--22502191	23	2.0	23	95	0	85	23	8	23	44	1.80
22502862--22503007	76	1.9	76	100	0	292	16	15	22	45	1.84
22506844--22506873	14	2.1	14	100	0	60	30	13	26	30	1.94
22512639--22512667	14	2.1	14	100	0	58	41	0	13	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22514963--22515017	28	1.9	29	85	3	76	60	0	0	40	0.97
22516131--22516234	52	2.0	52	98	0	199	30	22	30	16	1.95
22518269--22518415	60	2.5	60	78	5	163	42	10	2	44	1.49
22525460--22525500	20	2.1	20	86	4	57	65	4	2	26	1.25
22533863--22533889	9	3.0	9	100	0	54	22	0	0	77	0.76
22534352--22534392	20	2.0	21	85	4	57	41	9	0	48	1.36
22546456--22546547	40	2.3	39	85	5	114	30	15	25	29	1.95
22546642--22546683	19	2.2	19	95	0	75	45	0	19	35	1.50
22547539--22547741	55	3.7	55	84	3	275	22	28	31	17	1.97
22553439--22553531	40	2.3	39	83	3	114	26	16	26	30	1.96
22554553--22554658	55	1.9	55	96	0	194	22	30	32	15	1.94
22558182--22558215	17	1.9	18	94	5	61	32	38	29	0	1.58
22567460--22567496	2	18.5	2	94	0	65	51	45	0	2	1.15
22568362--22568494	45	3.0	45	87	0	158	30	27	17	24	1.97
22572348--22572382	18	1.9	18	88	11	54	11	2	20	65	1.37
22572442--22572480	18	2.2	18	85	0	51	69	10	12	7	1.37
22582552--22582604	22	2.4	22	87	0	70	30	37	5	26	1.79
22583018--22583058	10	3.9	10	93	6	64	63	0	0	36	0.95
22583017--22583059	22	2.0	22	81	9	52	65	0	0	34	0.93
22582990--22583066	10	7.6	10	82	8	59	71	2	1	24	1.06
22583402--22583441	21	1.9	21	84	0	53	32	2	2	62	1.22
22583577--22583635	9	6.3	9	75	13	57	33	1	1	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22583565--22583636	37	1.9	37	86	5	101	31	2	2	62	1.24
22583565--22583636	18	3.9	19	78	8	69	31	2	2	62	1.24
22591807--22591918	37	3.0	37	97	0	206	32	22	25	20	1.98
22599365--22599393	11	2.6	11	100	0	58	44	0	17	37	1.49
22608655--22608697	21	2.0	21	100	0	86	37	18	9	34	1.83
22616336--22616396	6	9.5	6	75	10	50	16	1	6	75	1.09
22616343--22616398	20	2.9	19	76	7	60	16	1	7	75	1.11
22620011--22620108	25	4.1	23	84	7	90	24	23	19	32	1.97
22620038--22620119	25	3.3	25	92	0	137	24	21	24	29	1.99
22621820--22621852	11	3.1	11	82	8	50	60	0	30	9	1.27
22622654--22622772	55	2.2	55	95	3	213	47	4	13	34	1.62
22623326--22623555	46	5.0	46	91	1	318	40	13	23	22	1.89
22623639--22623694	13	4.2	13	74	2	58	37	3	23	35	1.72
22628310--22628347	19	2.1	19	85	9	53	39	2	2	55	1.28
22631199--22631235	13	2.8	13	100	0	74	62	5	32	0	1.18
22633337--22633377	21	2.0	21	90	0	64	19	29	21	29	1.98
22636840--22636881	19	2.3	18	84	8	57	71	4	0	23	1.05
22637594--22637650	3	19.0	3	75	7	53	61	1	35	1	1.17
22637615--22637649	9	3.9	9	96	0	61	54	2	42	0	1.15
22648906--22648971	31	2.1	32	83	8	82	45	3	7	43	1.47
22653974--22654014	21	2.0	21	90	0	64	29	19	29	21	1.98
22657411--22657457	22	2.1	22	88	0	67	31	10	17	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22657786--22657849	27	2.4	27	86	5	85	39	1	1	57	1.17
22657823--22657861	15	2.6	15	84	11	53	46	2	0	51	1.14
22657842--22657867	13	2.0	13	100	0	52	46	0	0	53	1.00
22657928--22657957	14	2.1	14	93	0	51	56	3	6	33	1.42
22665288--22665335	22	2.4	19	75	21	53	39	2	4	54	1.32
22665719--22665767	26	1.9	25	87	4	71	36	0	0	63	0.95
22665744--22665794	19	2.7	18	75	19	59	35	1	0	62	1.06
22672181--22672207	4	6.8	4	100	0	54	22	0	0	77	0.76
22676528--22676976	67	6.9	65	67	17	275	34	16	11	37	1.85
22676528--22676997	64	7.2	64	67	17	243	34	15	11	37	1.85
22676488--22677111	131	4.8	131	85	2	761	33	15	12	37	1.85
22679029--22679097	22	3.1	22	87	0	93	20	21	15	42	1.89
22683355--22683540	41	4.6	39	80	5	158	35	24	15	24	1.94
22686708--22686752	5	8.8	5	80	4	54	17	4	0	77	0.92
22686708--22686754	16	3.0	16	84	3	60	19	4	0	76	0.95
22698670--22698835	53	3.1	53	87	6	203	26	15	27	30	1.96
22715652--22715728	18	4.3	18	76	12	68	36	14	11	37	1.82
22715664--22715735	18	4.0	18	79	0	72	34	15	12	37	1.85
22717110--22717155	20	2.2	20	84	3	56	50	2	0	47	1.13
22717120--22717157	20	1.9	20	94	0	67	44	5	0	50	1.24
22723767--22723826	22	2.7	21	72	10	57	68	6	0	25	1.14
22723776--22723816	14	2.9	14	89	7	57	78	2	0	19	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22725164--22725215	23	2.3	22	75	21	54	9	23	1	65	1.32
22730036--22730062	4	6.8	4	100	0	54	74	0	0	25	0.83
22736520--22737732	139	8.7	141	95	1	1744	35	22	8	33	1.85
22738242--22738345	51	2.0	51	96	0	190	21	25	18	35	1.95
22757781--22757819	16	2.4	16	82	0	51	2	15	7	74	1.15
22762271--22762310	16	2.5	16	79	0	53	2	15	12	70	1.28
22764232--22764260	10	2.7	11	89	10	51	51	0	0	48	1.00
22764254--22764288	7	5.0	7	96	0	61	82	0	0	17	0.66
22764897--22765058	81	2.0	81	98	0	315	49	19	6	24	1.72
22766199--22766230	17	1.9	17	93	6	57	40	0	0	59	0.97
22775310--22775346	19	1.9	19	88	0	56	48	5	5	40	1.49
22775481--22775509	14	2.1	14	100	0	58	79	0	6	13	0.93
22780966--22781008	16	2.7	16	88	0	68	41	0	30	27	1.56
22781213--22781244	15	2.1	15	100	0	64	53	0	0	46	1.00
22781553--22781639	45	1.9	45	90	0	138	19	32	10	37	1.86
22782116--22782159	20	2.1	21	83	4	54	54	0	0	45	0.99
22783105--22783154	19	2.6	19	79	14	59	14	8	0	78	0.97
22783437--22783477	21	2.0	21	90	0	64	31	2	2	63	1.20
22786626--22786684	22	2.7	22	76	23	70	52	5	6	35	1.50
22787282--22787331	25	2.1	22	82	10	55	52	0	12	36	1.39
22787354--22787392	20	1.9	21	89	5	62	43	5	20	30	1.73
22788516--22788565	26	1.9	26	87	0	73	62	0	2	36	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22788606--22788705	50	2.0	50	98	0	191	51	2	12	35	1.51
22789097--22789172	22	3.7	21	76	15	68	40	17	6	35	1.75
22789126--22789204	35	2.2	37	86	13	121	35	16	10	37	1.82
22789147--22789202	17	3.5	15	88	9	60	35	16	10	37	1.83
22789133--22789204	19	3.9	19	89	10	123	36	15	11	37	1.83
22789596--22789761	87	1.9	87	80	4	192	27	21	18	33	1.96
22789485--22789974	261	1.9	261	87	3	736	26	23	17	32	1.97
22789831--22790371	205	2.7	202	94	2	935	28	22	18	30	1.97
22791939--22791963	10	2.5	10	100	0	50	48	8	12	32	1.69
22791959--22792014	26	2.2	26	100	0	112	30	7	26	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141