genome.fa.s6.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  82  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23534414--23534562	20	7.6	19	71	21	112	65	0	34	0	0.93
23534418--23534500	22	3.6	22	84	9	103	63	0	36	0	0.94
23534413--23534549	12	10.0	14	72	16	85	66	0	33	0	0.92
23534438--23534584	79	1.9	78	83	9	185	68	0	31	0	0.90
23534462--23534598	61	2.2	58	70	13	62	67	0	32	0	0.91
23534478--23534595	45	2.5	45	80	12	123	66	0	33	0	0.92
23534406--23534583	40	4.3	42	75	16	158	66	0	33	0	0.92
23539183--23539227	18	2.5	18	88	0	72	15	48	6	28	1.70
23539770--23539832	12	5.1	12	77	7	63	57	17	0	25	1.40
23539790--23539839	14	3.6	14	71	13	50	58	20	0	22	1.40
23539783--23539841	26	2.3	26	83	13	86	57	16	0	25	1.39
23540014--23540039	3	8.7	3	100	0	52	69	30	0	0	0.89
23540101--23540128	12	2.3	12	100	0	56	71	7	0	21	1.09
23540103--23540153	21	2.4	20	84	15	59	66	7	0	25	1.18
23540383--23540481	28	3.5	28	93	4	155	50	0	11	38	1.38
23540673--23540697	6	4.2	6	100	0	50	0	0	48	52	1.00
23541999--23542040	14	3.1	14	82	3	50	52	4	0	42	1.22
23554012--23554053	14	2.9	14	82	3	57	50	2	0	47	1.14
23556857--23556881	11	2.3	11	100	0	50	0	8	0	92	0.40
23558764--23559015	125	2.0	124	95	0	450	38	12	20	28	1.89
23560761--23560786	4	6.5	4	100	0	52	50	23	0	26	1.50
23560901--23560934	4	8.5	4	100	0	68	50	23	0	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23571935--23572030	49	1.9	50	87	6	142	46	9	13	30	1.74
23577935--23577971	14	2.4	16	86	8	51	40	2	2	54	1.29
23584826--23584857	12	2.6	13	85	14	50	37	0	6	56	1.25
23586798--23586849	11	4.6	11	79	9	52	75	7	0	17	1.03
23586808--23586849	17	2.5	17	88	0	57	76	9	0	14	1.02
23587029--23587067	18	2.2	18	86	9	53	71	10	12	5	1.28
23589434--23589485	11	4.6	11	79	9	52	75	7	0	17	1.03
23589444--23589485	17	2.5	17	88	0	57	76	9	0	14	1.02
23589665--23589703	18	2.2	18	86	9	53	71	10	12	5	1.28
23608636--23608759	46	2.8	46	91	3	200	27	22	16	33	1.96
23608636--23608870	37	5.8	45	87	8	207	26	21	15	36	1.93
23608721--23608897	37	4.8	37	95	0	300	26	20	13	38	1.90
23616334--23616457	46	2.8	46	91	3	200	27	22	16	33	1.96
23616334--23616568	37	5.8	45	87	8	207	26	21	15	36	1.93
23616419--23616595	37	4.8	37	95	0	300	26	20	13	38	1.90
23619068--23619175	54	2.0	54	83	0	135	32	28	22	16	1.96
23619587--23619628	22	2.0	22	85	4	59	59	16	7	16	1.58
23621491--23621677	94	2.0	94	96	0	347	26	32	10	31	1.89
23631808--23631855	21	2.3	21	85	3	62	33	0	10	56	1.34
23632160--23632223	21	3.0	21	71	13	58	70	0	1	28	0.97
23632160--23632233	23	3.2	23	73	7	69	68	0	1	29	0.97
23635561--23635590	5	6.0	5	100	0	60	20	0	60	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23638093--23638200	5	21.4	5	81	5	92	42	20	2	34	1.67
23638684--23638741	29	2.0	29	93	0	98	24	41	18	15	1.89
23641511--23641539	15	2.0	15	93	6	51	68	0	6	24	1.13
23645848--23645875	2	14.0	2	100	0	56	0	50	0	50	1.00
23648034--23648066	17	2.0	17	88	5	50	39	0	0	60	0.97
23648033--23648085	27	2.0	27	85	3	72	33	0	1	64	1.05
23654004--23654090	29	3.0	29	91	0	147	36	18	14	29	1.91
23658093--23658161	30	2.3	30	94	0	120	52	20	8	18	1.72
23659081--23659105	12	2.1	12	100	0	50	0	24	0	76	0.80
23665508--23665570	25	2.6	23	73	11	63	42	17	23	15	1.88
23668266--23668319	15	3.6	15	82	7	65	24	25	25	24	2.00
23669583--23669747	43	3.9	42	79	4	170	27	15	26	30	1.96
23669589--23669766	85	2.1	85	78	6	182	26	14	26	32	1.95
23671904--23671938	13	2.6	14	81	9	54	31	11	20	37	1.88
23674848--23674875	7	4.0	7	100	0	56	57	0	0	42	0.99
23675235--23675492	78	3.4	78	81	8	332	36	18	7	37	1.79
23675246--23675461	73	2.9	73	84	8	269	37	18	6	37	1.77
23675163--23675499	151	2.3	145	85	4	426	38	17	7	36	1.78
23675417--23675461	21	2.1	22	87	4	65	42	17	4	35	1.70
23687776--23687828	20	2.7	20	75	0	52	43	18	5	32	1.74
23690400--23690710	155	2.0	155	100	0	622	39	11	18	29	1.86
23692145--23692192	3	16.0	3	77	0	51	60	4	4	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23692302--23692358	30	2.0	28	83	13	71	57	5	8	28	1.50
23693985--23694448	132	3.5	132	80	7	492	30	18	18	32	1.95
23693985--23694448	44	10.4	44	78	5	441	30	18	18	32	1.95
23695987--23696097	37	3.0	37	90	2	179	27	20	13	37	1.91
23700297--23700330	17	2.0	17	94	0	59	32	17	8	41	1.80
23706624--23706669	3	15.3	3	82	8	58	63	0	4	32	1.14
23706624--23706668	12	3.8	12	88	11	74	62	0	4	33	1.15
23706621--23706669	24	2.0	24	100	0	98	63	0	4	32	1.13
23713014--23713072	20	3.0	20	79	0	73	45	11	10	32	1.74
23713245--23713283	21	1.9	21	89	5	62	38	15	5	41	1.69
23714461--23714554	25	3.8	24	74	16	84	48	18	12	20	1.80
23722840--23722900	31	2.0	31	86	0	86	31	18	11	39	1.86
23730913--23731138	89	2.5	89	82	3	267	37	18	10	34	1.84
23731243--23731296	9	6.0	9	82	8	56	70	1	1	25	1.07
23731546--23731619	20	3.7	20	73	12	62	29	9	2	58	1.44
23731546--23731605	19	3.0	20	79	16	63	28	10	3	58	1.46
23731635--23731688	10	5.3	10	82	12	74	25	3	0	70	1.04
23731607--23731691	30	2.9	28	73	13	73	29	3	0	67	1.08
23731630--23731698	10	6.4	11	81	10	72	30	2	0	66	1.06
23731630--23731688	20	2.8	21	89	7	93	27	3	0	69	1.04
23731635--23731738	10	10.4	10	76	12	56	30	2	0	66	1.06
23731823--23732080	99	2.9	87	81	11	288	34	10	17	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23734139--23734223	34	2.5	34	84	3	100	31	5	23	38	1.79
23738072--23738187	50	2.3	52	89	3	173	33	14	12	38	1.85
23738059--23738187	50	2.5	52	84	3	172	34	13	12	38	1.83
23743395--23743454	28	2.1	28	82	11	70	45	10	10	35	1.71
23773576--23773635	30	2.0	30	83	9	77	35	16	21	26	1.95
23781375--23781428	25	2.2	25	80	6	58	42	5	3	48	1.44
23783774--23783803	15	2.0	15	93	0	51	33	30	0	36	1.58
23785688--23785729	7	6.0	7	83	16	52	71	0	14	14	1.15
23785688--23785729	21	2.0	21	90	0	66	71	0	14	14	1.15
23786996--23787091	45	2.2	43	83	3	111	33	17	20	28	1.96
23787249--23787905	50	13.3	50	68	8	367	31	20	23	25	1.98
23787192--23787908	100	7.2	100	90	2	1088	30	20	23	25	1.98
23789358--23789411	25	2.2	25	80	6	58	42	5	3	48	1.44
23791879--23791928	22	2.3	22	79	6	57	22	12	4	62	1.46
23795530--23795649	42	2.9	42	81	1	152	37	18	18	25	1.93
23796091--23796155	21	3.1	21	84	4	87	3	38	20	38	1.68
23801087--23801145	13	4.5	13	91	0	82	45	1	10	42	1.48
23802112--23802143	15	2.1	15	100	0	64	53	12	6	28	1.62
23802170--23802199	7	4.3	7	100	0	60	56	26	0	16	1.40
23803072--23803500	147	2.9	144	76	7	384	35	24	14	25	1.94
23804429--23804468	13	2.9	14	85	11	55	47	45	0	7	1.31
23804436--23804480	14	3.3	13	84	9	54	48	44	0	6	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23804802--23804863	28	2.2	28	94	0	106	35	33	0	30	1.58
23804864--23804902	14	2.8	14	84	0	51	41	43	0	15	1.46
23805479--23805781	114	2.7	112	74	11	283	28	23	21	26	1.99
23806545--23806585	18	2.3	18	83	8	57	46	17	0	36	1.48
23807285--23807490	103	2.0	103	96	0	376	39	21	15	23	1.91
23808814--23809091	43	6.5	43	81	3	276	28	26	18	26	1.98
23809226--23809281	27	2.1	27	83	6	69	57	1	1	39	1.20
23809235--23809441	104	2.0	104	97	1	389	57	6	5	30	1.45
23809269--23809455	53	3.5	51	67	21	134	58	8	5	27	1.48
23814422--23814464	7	6.1	7	83	0	59	27	48	0	23	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141