genome.fa.s6.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  29  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8846202--8846331	59	2.2	58	79	6	138	30	6	3	59	1.42
8846336--8846407	26	2.6	29	76	17	80	41	1	1	55	1.17
8846453--8846668	85	2.5	87	85	7	294	31	9	21	37	1.85
8852216--8852250	6	5.5	6	87	12	52	65	0	17	17	1.27
8856876--8856984	44	2.5	43	80	12	134	30	27	15	26	1.96
8856814--8856972	44	3.7	42	73	7	124	30	27	16	25	1.97
8861102--8861137	18	2.1	18	90	10	58	58	5	0	36	1.22
8861965--8862159	97	2.0	97	98	0	381	48	17	14	18	1.81
8864958--8865004	23	2.0	23	87	0	67	42	21	2	34	1.65
8864968--8865011	23	1.9	23	85	0	61	47	18	0	34	1.49
8872075--8872151	22	3.5	22	75	10	68	72	2	5	19	1.15
8873007--8873048	13	3.5	13	75	18	54	50	11	2	35	1.52
8873007--8873050	23	1.9	23	100	0	88	50	11	2	36	1.51
8880803--8880845	21	2.0	22	86	4	61	51	37	0	11	1.39
8880881--8880961	40	2.1	39	85	2	108	23	29	25	20	1.99
8881482--8881519	18	2.1	18	100	0	76	60	7	5	26	1.46
8901527--8901575	24	2.1	24	81	11	57	48	14	14	22	1.79
8905606--8905682	35	2.3	35	80	8	90	37	1	3	57	1.26
8909368--8909414	24	2.0	24	91	0	76	23	31	17	27	1.96
8915148--8915396	50	4.8	51	79	9	238	23	28	20	26	1.99
8928286--8928329	22	2.0	22	100	0	88	40	13	18	27	1.88
8931992--8932052	28	2.3	26	77	5	68	50	6	0	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8935543--8935651	41	2.7	41	88	0	146	29	23	20	26	1.99
8944439--8944547	41	2.7	41	88	0	146	29	23	20	26	1.99
8950597--8950657	26	2.3	26	85	0	86	32	29	14	22	1.94
8954736--8954774	17	2.2	18	86	4	53	38	0	2	58	1.12
8954833--8954937	50	2.1	52	90	3	169	31	12	4	51	1.60
8961971--8962036	31	2.1	31	85	0	87	43	10	7	37	1.68
8970732--8970765	17	2.0	17	94	0	59	50	0	0	50	1.00
8970732--8970769	18	2.2	17	90	4	58	52	0	0	47	1.00
8977073--8977127	26	2.1	26	86	6	76	18	20	20	41	1.90
8977080--8977208	25	5.2	25	68	13	70	20	26	20	32	1.97
8977213--8977323	25	4.5	25	67	3	82	20	24	18	36	1.95
8981598--8981674	23	3.3	23	78	8	68	62	10	1	25	1.35
8984066--8984137	21	3.4	22	72	18	71	25	38	16	19	1.92
8987730--8987842	57	2.0	57	87	0	163	37	9	30	23	1.87
8987896--8988020	33	3.8	33	82	2	144	43	18	21	16	1.88
8988009--8988066	28	2.1	28	87	6	82	37	15	27	18	1.92
8988009--8988073	28	2.3	28	84	5	69	41	13	24	20	1.88
9002606--9002656	26	1.9	27	92	4	86	54	0	39	5	1.24
9008940--9008991	25	2.1	25	89	7	79	65	1	0	32	1.04
9019937--9019975	18	2.2	17	86	4	51	82	0	10	7	0.86
9022104--9022177	25	2.9	25	86	6	96	39	13	14	32	1.86
9022104--9022177	26	2.9	24	86	9	94	39	13	14	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9037768--9037888	35	3.5	35	77	0	125	23	25	23	28	2.00
9049105--9049256	41	3.7	41	85	3	191	35	13	29	21	1.91
9049130--9049195	20	3.2	20	71	12	71	36	13	33	16	1.88
9050210--9052172	981	2.0	981	100	0	3926	35	23	10	29	1.89
9062637--9062745	40	2.7	40	79	0	110	33	20	28	18	1.96
9063147--9063213	29	2.2	30	82	10	75	32	19	2	44	1.66
9077101--9077287	49	3.8	48	76	6	189	26	30	15	27	1.96
9077052--9077271	98	2.2	98	86	4	293	29	30	15	25	1.95
9083136--9083394	134	1.9	134	96	0	473	30	14	19	35	1.92
9085876--9085911	18	2.0	18	100	0	72	55	5	5	33	1.46
9093099--9093151	20	2.7	20	76	2	54	45	16	1	35	1.59
9093223--9093550	144	2.2	147	83	8	436	46	9	3	40	1.55
9093223--9093552	146	2.3	148	82	9	435	46	9	3	40	1.54
9093861--9093887	13	2.1	13	100	0	54	70	0	0	29	0.88
9095539--9095569	6	5.3	6	96	3	55	32	12	0	54	1.38
9097806--9097855	25	2.0	25	88	0	73	38	12	12	38	1.80
9098237--9098527	41	7.1	42	81	6	328	22	23	23	30	1.99
9098430--9098536	42	2.6	40	76	5	124	22	25	18	33	1.97
9098419--9098551	40	3.3	39	72	11	108	25	22	18	33	1.96
9098972--9099007	13	2.6	14	82	8	56	16	0	38	44	1.48
9098944--9099006	14	4.5	14	71	15	58	19	0	34	46	1.50
9098972--9099007	7	5.3	7	90	6	56	16	0	38	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9099054--9099253	7	28.1	7	72	7	62	21	2	33	43	1.64
9099049--9099250	14	14.2	14	72	7	120	21	1	31	44	1.64
9099117--9099210	21	4.4	21	82	2	89	18	1	36	44	1.57
9099187--9099280	43	2.2	43	76	3	100	21	2	39	37	1.65
9106939--9106997	25	2.4	25	88	0	82	33	10	10	45	1.72
9108902--9108977	30	2.5	30	76	0	80	28	22	25	23	1.99
9109096--9109218	26	4.7	26	72	5	95	39	20	20	20	1.93
9109407--9109613	80	2.6	81	82	4	249	24	17	16	40	1.90
9109407--9109613	27	7.7	27	82	2	211	24	17	16	40	1.90
9115362--9115412	24	2.1	24	100	0	102	45	21	3	29	1.70
9117885--9117995	41	2.7	41	83	5	118	36	24	19	18	1.94
9124400--9124519	60	2.0	60	100	0	240	40	15	3	41	1.63
9124733--9124757	13	1.9	13	100	0	50	40	28	8	24	1.83
9125515--9125622	41	2.6	41	77	2	110	37	25	19	17	1.94
9133225--9133282	19	2.7	22	84	10	68	36	8	17	37	1.80
9133979--9134024	24	1.9	24	86	8	67	32	8	0	58	1.28
9134121--9134153	15	2.1	16	88	5	50	30	6	0	63	1.18
9135943--9135989	19	2.5	19	86	6	60	27	19	8	44	1.79
9138958--9138982	8	3.1	8	100	0	50	84	0	0	16	0.63
9139014--9139056	11	3.8	11	78	6	50	74	0	25	0	0.82
9139534--9139666	66	2.0	65	88	5	205	17	36	15	30	1.90
9141063--9141118	24	2.3	24	96	0	103	33	12	25	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9141448--9141744	88	3.4	88	75	3	326	33	20	19	25	1.97
9141445--9141744	44	6.8	44	73	4	217	34	20	19	25	1.96
9141448--9141784	44	7.6	44	73	6	171	32	20	20	26	1.97
9141685--9142037	143	2.5	143	82	1	395	30	18	22	29	1.97
9142016--9142244	89	2.6	89	82	2	271	30	23	21	24	1.99
9141994--9142324	89	3.7	88	77	3	250	29	23	20	25	1.99
9142287--9142676	131	3.0	132	86	0	566	29	19	24	26	1.98
9143116--9143157	19	2.3	18	84	8	50	35	7	19	38	1.79
9167188--9167264	37	2.1	36	88	4	111	25	31	19	23	1.98
9167432--9167522	47	1.9	47	100	0	182	28	29	8	32	1.87
9171674--9172064	198	2.0	198	88	5	594	41	17	12	28	1.86
9172127--9172192	33	2.0	33	93	0	114	33	18	9	39	1.82
9172499--9172546	19	2.5	20	86	10	64	4	18	2	75	1.07
9172503--9172553	20	2.5	20	78	9	59	3	15	3	76	1.08
9177109--9177286	27	6.6	27	84	3	205	29	28	15	26	1.96
9177130--9177285	82	1.9	81	88	3	233	29	28	15	26	1.96
9179131--9179184	27	2.0	28	88	3	83	25	9	12	51	1.70
9187383--9187422	19	2.0	20	85	4	55	40	10	32	17	1.83
9193665--9193739	33	2.2	34	92	2	125	42	13	6	37	1.70
9193665--9193755	33	2.7	33	83	5	103	43	15	5	35	1.70
9205809--9206070	39	6.7	40	88	7	337	24	27	22	25	2.00
9207148--9207174	14	1.9	14	100	0	54	0	7	3	88	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9209192--9209218	14	1.9	14	100	0	54	0	7	3	88	0.61
9224443--9224481	18	2.2	17	82	13	51	5	17	2	74	1.12
9227242--9227277	17	2.1	18	89	5	56	5	22	0	72	1.05
9227251--9227305	19	3.1	18	73	21	53	7	20	1	70	1.20
9230737--9230787	20	2.6	19	78	9	57	50	11	5	31	1.62
9233129--9233167	19	2.0	20	95	5	71	10	25	17	46	1.80
9233171--9233210	20	2.0	20	90	0	62	27	27	12	32	1.93
9244321--9244619	28	10.7	28	97	0	517	34	26	12	27	1.92
9247107--9247131	12	2.1	12	100	0	50	44	16	8	32	1.76
9251927--9252046	45	2.6	45	89	1	186	35	32	4	28	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141