genome.fa.s6.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  126  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37549291--37549352	28	2.2	28	88	5	90	32	12	9	45	1.75
37557163--37557221	23	2.5	23	83	5	75	32	0	30	37	1.58
37558902--37559032	50	2.6	52	77	8	135	36	12	16	35	1.85
37566128--37566299	40	4.3	40	85	2	186	26	28	22	22	1.99
37566284--37566361	40	1.9	41	82	10	97	28	28	20	23	1.99
37587542--37587611	34	2.1	34	97	0	131	41	37	11	10	1.75
37587764--37587917	77	2.0	76	96	1	281	22	20	16	40	1.90
37589012--37589188	27	6.6	27	82	7	180	28	28	15	27	1.96
37589012--37589188	55	3.3	54	81	6	198	28	28	15	27	1.96
37589033--37589187	82	1.9	80	85	5	213	28	29	15	27	1.96
37589708--37589938	116	2.0	116	99	0	453	33	19	12	34	1.89
37599832--37599972	49	2.8	49	85	2	192	26	20	25	27	1.99
37599827--37599972	51	2.9	51	84	2	197	25	20	26	27	1.99
37605484--37605680	50	3.9	50	82	1	243	25	18	25	30	1.98
37605489--37605680	49	3.9	49	80	6	224	26	18	25	30	1.98
37609673--37609834	46	3.5	46	81	7	175	25	30	17	26	1.97
37617818--37618001	40	4.6	40	78	12	182	26	27	21	25	2.00
37617785--37617965	79	2.3	79	80	9	208	25	26	20	27	1.99
37617785--37618000	79	2.7	80	78	9	194	25	27	20	25	1.99
37618742--37618820	38	2.1	38	95	0	140	40	24	10	25	1.86
37619280--37619337	25	2.5	24	81	13	68	8	18	1	70	1.21
37625852--37626101	40	6.3	39	79	12	235	25	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37625885--37626108	40	5.7	40	85	5	285	25	28	22	24	1.99
37625885--37626113	79	2.9	79	91	3	345	25	28	21	24	1.99
37629330--37629454	50	2.5	50	80	0	151	20	30	20	28	1.98
37634231--37634256	13	2.0	13	100	0	52	53	7	7	30	1.57
37634965--37635014	3	16.7	3	83	8	66	2	32	0	66	1.03
37656789--37657030	50	4.7	50	81	6	222	24	26	20	27	1.99
37659870--37659913	18	2.4	18	76	0	52	20	34	4	40	1.73
37666776--37666825	25	2.0	25	96	0	91	34	12	30	24	1.91
37670758--37670877	25	4.8	25	82	4	134	30	23	20	25	1.98
37671509--37671549	21	1.9	22	90	5	66	36	7	21	34	1.82
37677830--37677903	29	2.6	29	89	4	105	25	16	32	25	1.96
37684286--37684696	47	8.7	47	97	0	750	32	8	30	29	1.86
37684815--37684893	37	2.1	37	88	4	115	25	18	30	25	1.98
37691822--37691862	21	1.9	22	90	5	66	36	9	21	31	1.86
37695662--37695760	28	3.5	29	80	6	105	30	26	15	28	1.96
37697580--37697627	14	3.6	14	72	16	57	25	29	2	43	1.66
37697581--37697635	25	2.2	25	96	0	101	29	27	3	40	1.73
37701447--37701536	40	2.3	39	88	1	126	23	22	28	25	1.99
37701469--37701571	39	2.6	40	81	4	120	26	21	28	24	1.99
37701510--37701958	230	2.0	229	98	0	871	30	19	22	26	1.98
37702212--37702355	70	2.1	70	97	0	270	18	13	22	44	1.86
37709934--37710136	102	2.0	102	99	0	397	35	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37711127--37711157	15	2.1	15	93	0	53	38	32	6	22	1.80
37741686--37741817	50	2.6	51	84	1	167	35	28	11	25	1.90
37743794--37743839	21	2.3	20	78	14	51	45	17	6	30	1.73
37744425--37744451	14	1.9	14	100	0	54	14	25	22	37	1.93
37748157--37748196	14	2.7	14	84	7	53	50	0	0	50	1.00
37756389--37756427	19	2.0	20	85	5	53	51	0	15	33	1.44
37757012--37757131	42	2.7	43	84	6	143	28	26	25	19	1.99
37757051--37757146	47	2.0	47	93	0	165	27	28	26	18	1.98
37762897--37762949	23	2.3	23	83	6	63	11	15	30	43	1.81
37770157--37770189	12	2.8	12	100	0	66	42	27	15	15	1.86
37774313--37774411	42	2.4	42	87	3	146	25	27	21	26	1.99
37779465--37779608	56	2.6	56	100	0	288	19	29	19	31	1.96
37783902--37783956	24	2.2	26	81	12	71	45	0	1	52	1.11
37784095--37784188	45	2.1	45	88	2	136	31	27	5	35	1.79
37784169--37784220	16	3.2	16	94	0	86	34	36	0	28	1.58
37788912--37789439	269	2.0	270	96	0	986	39	20	12	27	1.89
37805513--37805556	22	2.0	22	95	0	79	40	2	18	38	1.63
37808320--37808351	16	2.0	16	93	0	55	25	15	0	59	1.36
37808574--37808718	51	2.8	51	81	8	195	31	28	16	23	1.96
37808574--37808744	51	3.4	50	75	12	170	30	29	15	24	1.96
37810183--37810251	16	4.0	16	71	21	50	33	31	18	15	1.93
37810202--37810312	22	5.6	22	69	23	93	32	29	20	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37810158--37810331	38	4.6	38	89	0	240	33	27	18	20	1.96
37812936--37812996	31	2.0	31	90	0	95	27	21	32	18	1.96
37821273--37821330	4	14.5	4	75	0	53	51	3	24	20	1.62
37844427--37844555	27	4.8	27	89	1	188	16	16	24	43	1.87
37845320--37845395	22	3.5	21	69	15	64	47	13	31	7	1.71
37845320--37845405	44	2.0	44	95	0	154	46	12	32	8	1.71
37858175--37858354	51	3.5	51	81	6	170	27	15	27	29	1.96
37860956--37860994	20	2.0	20	90	10	62	15	23	5	56	1.59
37861801--37862702	28	32.2	28	90	6	1427	28	23	24	23	1.99
37861803--37862702	56	16.1	56	98	0	1723	28	23	25	23	1.99
37863120--37863449	27	12.2	27	82	6	373	19	17	22	40	1.91
37863653--37863687	17	2.1	17	94	0	61	25	37	22	14	1.92
37864954--37865144	50	3.7	50	80	4	202	25	29	18	26	1.98
37869221--37869297	27	2.9	27	92	3	120	28	32	23	15	1.95
37869347--37869399	27	2.0	27	96	0	97	32	30	20	16	1.95
37869155--37869399	129	1.9	129	93	0	418	30	29	20	20	1.97
37870002--37870156	33	4.6	33	70	21	124	34	25	21	18	1.96
37879410--37879591	27	6.7	26	83	6	184	18	19	20	41	1.91
37879398--37879606	81	2.6	81	82	4	233	20	19	21	38	1.93
37881113--37881166	25	2.2	25	86	0	72	20	48	9	22	1.78
37886346--37886449	42	2.4	43	82	1	129	26	16	23	33	1.95
37889059--37889162	51	2.1	49	84	7	131	29	11	30	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37889284--37889521	47	5.0	47	77	9	201	32	11	28	27	1.91
37888946--37889394	225	2.0	225	99	0	889	32	8	25	33	1.85
37889305--37889481	99	1.8	97	82	4	232	32	11	28	28	1.91
37889684--37889835	37	4.1	37	92	0	241	22	19	32	26	1.97
37899765--37899794	15	2.0	15	100	0	60	26	20	20	33	1.97
37902807--37902912	53	2.0	53	100	0	212	24	20	15	39	1.91
37906457--37906504	25	1.9	26	91	8	82	58	8	18	14	1.61
37915185--37915338	77	2.0	78	88	1	229	30	5	22	41	1.76
37915184--37915340	39	4.1	39	85	3	201	29	5	22	42	1.75
37919195--37919244	23	2.1	23	85	3	64	48	18	16	18	1.82
37934864--37934897	15	2.3	15	89	0	50	8	0	8	82	0.85
37938689--37938735	19	2.5	19	86	6	60	29	19	6	44	1.75
37940965--37940992	4	7.0	4	100	0	56	25	25	0	50	1.50
37941788--37941830	15	2.6	16	78	14	52	81	6	6	4	0.98
37941866--37941907	12	3.7	11	82	14	50	76	0	23	0	0.79
37941871--37941912	18	2.3	18	87	0	57	76	0	23	0	0.79
37941864--37941908	11	4.0	11	82	5	63	73	0	26	0	0.84
37944174--37945147	44	21.8	45	72	7	387	31	18	21	27	1.97
37944163--37944682	178	2.9	177	87	1	745	32	18	22	26	1.97
37946691--37946729	20	1.9	20	84	5	51	10	0	7	82	0.86
37946691--37946729	14	2.7	14	88	4	51	10	0	7	82	0.86
37946701--37946740	19	2.1	19	90	4	62	10	0	7	82	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37946701--37946749	22	2.3	21	86	6	64	12	2	6	79	0.99
37971168--37971266	27	3.7	27	79	5	119	26	19	14	40	1.89
37971149--37971255	54	2.0	54	83	7	137	24	20	14	40	1.90
37973573--37973619	24	2.0	24	83	8	60	53	12	14	19	1.73
37989001--37989049	24	2.0	24	84	7	64	51	10	12	26	1.71
38000318--38000349	16	2.0	16	100	0	64	18	31	12	37	1.88
38005742--38005810	27	2.6	27	95	0	120	44	18	17	18	1.86
38018193--38018396	103	2.0	103	89	0	309	25	24	18	31	1.98
38036333--38036364	5	6.4	5	92	0	55	37	0	3	59	1.13
38036705--38036730	12	2.2	12	100	0	52	30	15	19	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141