genome.fa.s6.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  25  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7705663--7705870	54	3.9	54	89	2	283	22	14	18	44	1.86
7705692--7705870	81	2.2	81	90	2	288	22	14	18	44	1.86
7711433--7711531	28	3.5	28	95	0	171	34	23	20	22	1.97
7711895--7711983	27	3.3	27	85	3	117	21	16	21	40	1.91
7726385--7726427	19	2.3	18	80	11	52	46	11	4	37	1.61
7735457--7735509	27	2.0	26	82	10	63	67	11	3	16	1.35
7735967--7736008	22	2.0	21	86	9	59	66	4	4	23	1.30
7736009--7736047	20	2.0	20	90	10	62	56	7	2	33	1.41
7737728--7737890	45	3.6	45	81	4	177	24	22	21	31	1.98
7738031--7738216	100	1.9	99	88	1	282	25	23	21	30	1.99
7738322--7738427	50	2.1	49	79	5	113	25	24	22	27	2.00
7748412--7748453	23	1.9	22	85	9	59	64	7	7	21	1.43
7748907--7749180	136	2.0	139	88	4	412	34	24	14	26	1.94
7757345--7757403	7	8.4	7	83	14	77	42	0	44	13	1.44
7757361--7757416	14	3.9	14	84	9	67	37	0	46	16	1.47
7768113--7768147	16	2.1	17	89	5	54	37	0	51	11	1.38
7776923--7776958	17	2.1	17	90	10	56	30	0	0	69	0.89
7777973--7778031	26	2.4	23	75	10	55	45	3	0	50	1.18
7781163--7781350	51	3.7	52	81	7	190	25	15	29	30	1.96
7784491--7784538	22	2.2	22	82	14	55	31	6	6	56	1.49
7789025--7789061	14	2.6	15	83	12	51	72	0	27	0	0.84
7791206--7792140	44	19.9	44	67	19	360	33	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7791208--7792202	142	7.0	142	93	0	1670	33	18	20	27	1.96
7791963--7792145	97	1.9	97	80	4	217	32	17	21	28	1.96
7792278--7792952	50	13.5	50	67	5	324	33	23	19	23	1.97
7792270--7792936	100	6.7	100	82	1	721	33	23	19	23	1.97
7793197--7793227	13	2.4	13	94	0	53	80	0	0	19	0.71
7794420--7794467	22	2.2	22	82	14	55	31	6	6	56	1.49
7800844--7801026	51	3.6	50	86	3	242	24	15	28	31	1.95
7800844--7801026	101	1.8	102	85	3	262	24	15	28	31	1.95
7807729--7807769	20	2.0	20	86	9	57	17	34	17	31	1.93
7807756--7807859	20	5.2	20	65	17	63	16	27	15	40	1.88
7807745--7807926	40	4.6	40	83	2	222	16	28	17	38	1.91
7807745--7807926	80	2.3	80	89	3	269	16	28	17	38	1.91
7808961--7809105	40	3.7	40	74	8	107	16	27	16	39	1.90
7809925--7809979	20	2.8	19	86	8	74	52	1	23	21	1.56
7817803--7817903	20	5.1	20	71	4	78	11	22	21	43	1.85
7817907--7817998	20	4.6	20	71	12	64	17	33	17	31	1.93
7817711--7817998	40	7.2	40	76	3	242	16	27	18	37	1.92
7817923--7818030	40	2.7	40	81	7	114	15	29	20	34	1.94
7822407--7822449	22	2.0	22	85	0	59	25	25	16	32	1.96
7827065--7827098	15	2.2	16	89	5	52	20	0	8	70	1.13
7828776--7828885	54	2.0	54	96	0	202	39	13	20	26	1.90
7831446--7831501	20	2.8	20	89	5	78	48	1	28	21	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7834776--7834834	30	2.0	30	83	12	77	22	37	30	10	1.87
7839506--7839638	5	25.4	5	71	19	53	19	6	3	70	1.24
7841170--7841218	8	6.7	7	88	11	64	26	0	0	73	0.83
7841177--7841219	8	5.5	8	88	5	70	25	0	0	74	0.82
7841170--7841219	14	3.3	15	84	15	68	26	0	0	74	0.83
7842891--7842944	26	2.0	27	82	3	65	35	20	24	20	1.96
7843140--7843441	27	11.2	27	83	3	324	18	18	19	44	1.88
7848105--7848142	18	2.1	18	100	0	76	10	0	39	50	1.37
7852495--7852555	22	2.9	22	78	4	63	19	26	19	34	1.96
7859445--7859491	17	2.9	16	76	17	53	44	2	0	53	1.12
7869626--7869888	40	6.6	39	86	4	278	25	27	21	25	1.99
7869626--7869888	120	2.2	119	82	4	307	25	27	21	25	1.99
7869820--7869897	40	1.9	41	82	10	97	26	28	20	24	1.99
7877574--7877838	40	6.7	40	85	5	286	26	27	21	24	1.99
7877541--7877838	80	3.7	80	79	9	263	25	27	21	25	1.99
7877770--7877847	40	1.9	41	82	10	97	26	28	20	24	1.99
7890033--7890116	43	2.0	40	84	6	105	28	13	25	33	1.93
7896663--7896741	4	19.8	4	100	0	158	25	0	24	50	1.49
7897315--7897430	50	2.3	49	88	2	162	31	21	18	27	1.97
7898831--7899008	27	6.6	27	83	3	205	26	15	28	29	1.96
7898832--7898987	82	1.9	81	88	3	233	26	15	28	29	1.96
7898828--7899008	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7901350--7901401	3	17.3	3	100	0	104	67	0	0	32	0.91
7902415--7902440	13	2.0	13	100	0	52	53	0	0	46	1.00
7902411--7902485	11	7.4	11	73	18	56	57	0	1	41	1.07
7902472--7902545	30	2.5	30	93	6	125	66	0	2	31	1.06
7902418--7902572	38	4.2	39	75	22	172	61	0	2	36	1.10
7902482--7902534	10	5.3	10	75	6	54	73	0	1	24	0.93
7902482--7902572	40	2.3	39	81	11	96	67	0	3	29	1.07
7902531--7902556	11	2.4	11	100	0	52	53	0	7	38	1.30
7906343--7906387	23	2.0	23	81	0	54	42	2	4	51	1.34
7909310--7909348	6	6.5	6	93	0	69	56	0	28	15	1.40
7909508--7909589	25	3.3	25	94	3	139	39	8	15	36	1.78
7915226--7915337	50	2.2	51	81	9	122	26	36	20	16	1.93
7917044--7917136	45	2.1	45	97	0	177	34	8	22	34	1.85
7922990--7923049	26	2.4	25	83	8	68	43	10	13	33	1.77
7922990--7923062	26	2.8	26	76	17	64	41	9	15	34	1.79
7924765--7924802	19	2.0	19	90	10	60	42	5	18	34	1.73
7926352--7926404	17	3.1	16	81	5	61	28	18	22	30	1.98
7934334--7934359	13	2.0	13	100	0	52	61	0	0	38	0.96
7937008--7937116	44	2.5	43	83	4	130	32	23	18	25	1.97
7953100--7953134	17	2.1	18	89	10	56	42	8	0	48	1.33
7956598--7956641	18	2.5	17	78	10	52	68	2	4	25	1.20
7957696--7957969	50	5.5	50	65	1	163	25	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7957672--7957961	100	2.9	100	87	0	418	26	21	21	30	1.99
7958057--7958673	88	7.0	88	81	3	661	22	24	24	28	1.99
7958083--7958673	174	3.4	175	80	3	625	22	23	25	28	1.99
7958369--7958510	43	3.3	43	67	13	110	21	24	24	29	1.99
7958081--7958673	262	2.3	263	83	2	710	22	23	25	28	1.99
7963188--7963617	114	3.8	114	90	0	617	24	21	26	27	1.99
7963749--7963799	8	6.5	8	75	4	50	49	33	0	17	1.47
7965087--7965496	147	2.8	146	77	5	398	27	15	21	34	1.94
7967598--7967762	13	12.5	13	75	7	145	40	9	4	46	1.56
7967622--7967771	53	2.8	53	98	0	291	40	10	4	45	1.56
7967966--7968015	16	3.4	16	73	21	63	46	18	2	34	1.60
7968123--7968389	9	30.8	9	74	14	231	45	20	1	32	1.61
7968123--7968362	34	6.9	34	74	13	186	45	20	1	32	1.59
7968093--7968246	79	1.9	77	82	12	188	46	20	2	29	1.64
7968094--7968317	27	8.4	25	74	16	150	45	20	2	31	1.63
7968101--7968271	18	9.5	19	68	21	75	47	20	1	30	1.60
7968123--7968400	25	10.7	25	75	11	199	45	20	1	32	1.60
7968198--7968385	71	2.7	68	81	12	181	44	21	1	32	1.62
7973890--7973961	21	3.4	21	88	3	101	34	15	44	5	1.70
7974439--7974627	42	4.5	41	80	7	207	24	17	20	36	1.95
7976445--7976622	27	6.6	26	82	6	178	26	15	28	29	1.96
7976446--7976601	82	1.9	81	86	3	224	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7976442--7976622	82	2.2	81	82	2	220	27	16	27	29	1.97
7976527--7976633	27	3.9	27	85	1	70	26	14	28	30	1.95
7979358--7979794	140	3.1	140	100	0	874	55	5	7	31	1.50
7982541--7982594	27	2.0	28	88	3	83	51	0	7	40	1.30
7984391--7984568	27	6.6	27	83	3	205	26	15	28	29	1.96
7984392--7984547	82	1.9	81	88	3	233	26	15	28	29	1.96
7984388--7984568	82	2.2	81	83	2	229	27	15	27	29	1.96
7994670--7994843	3	58.0	3	100	0	348	33	33	0	33	1.58
7995111--7995235	54	2.3	54	80	5	146	19	33	21	25	1.97
7999718--7999751	18	2.0	16	88	11	50	58	5	0	35	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141