genome.fa.s6.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  93  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26372698--26372743	19	2.4	19	85	0	56	23	0	19	56	1.42
26375705--26375737	15	2.2	15	94	0	57	21	12	9	57	1.62
26377071--26377126	28	1.9	28	82	13	69	33	0	3	62	1.12
26384392--26384504	35	3.2	35	63	18	90	47	5	2	44	1.39
26384413--26384447	16	2.1	16	94	5	61	54	0	0	45	0.99
26384483--26384517	16	2.1	16	94	5	61	54	0	0	45	0.99
26384389--26384530	70	2.0	70	98	0	275	47	7	2	42	1.45
26388106--26388152	24	1.9	25	86	4	69	21	6	25	46	1.74
26389005--26389037	2	16.5	2	100	0	66	48	0	51	0	1.00
26389820--26389959	44	3.0	48	73	8	135	32	5	22	39	1.76
26395008--26395054	23	2.0	23	95	0	85	23	10	23	42	1.85
26397530--26397567	17	2.2	17	86	9	51	34	13	2	50	1.55
26406130--26406227	29	3.5	29	78	10	89	39	25	14	20	1.90
26413283--26413320	19	2.0	19	94	0	67	65	5	7	21	1.38
26425702--26426012	77	4.0	77	99	0	604	30	15	25	28	1.96
26427504--26427777	84	3.3	84	82	4	319	25	14	24	36	1.93
26427504--26427772	28	9.8	28	79	3	251	24	14	24	36	1.93
26427573--26427801	111	2.1	112	82	0	271	23	14	25	36	1.93
26431127--26431185	23	2.5	24	86	8	84	13	18	28	38	1.89
26433078--26433131	3	17.7	3	92	3	90	31	0	1	66	1.02
26433766--26433807	15	2.8	15	81	0	57	30	0	9	59	1.29
26434742--26434858	58	2.0	58	93	0	198	17	12	36	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26439447--26439810	132	2.8	131	92	1	595	28	17	24	29	1.98
26440996--26441046	3	16.7	3	91	4	84	31	0	1	66	1.03
26441289--26441333	19	2.4	19	85	7	56	31	2	0	66	1.04
26446031--26446075	23	2.0	23	86	4	65	37	6	17	37	1.76
26449147--26449195	22	2.2	22	83	16	66	48	0	2	48	1.12
26449489--26449534	23	2.0	23	91	0	74	30	0	0	69	0.89
26453742--26453803	27	2.3	27	81	10	72	62	0	4	32	1.16
26457980--26458136	37	4.0	37	82	14	199	26	21	15	36	1.93
26458053--26458419	46	7.6	46	86	7	437	29	22	14	34	1.93
26458096--26458413	52	6.3	52	86	7	417	28	22	13	34	1.93
26458053--26458405	196	1.8	196	92	0	598	28	22	14	34	1.93
26458053--26458419	98	3.7	97	84	9	492	29	22	14	34	1.93
26462924--26462957	14	2.4	14	90	0	50	50	8	11	29	1.69
26463502--26463538	16	2.3	16	86	13	58	40	0	0	59	0.97
26463550--26463605	22	2.6	22	83	5	62	51	0	0	48	1.00
26463661--26463689	9	3.2	9	100	0	58	48	0	0	51	1.00
26468395--26468700	111	2.8	110	90	2	458	29	15	20	34	1.93
26480587--26481264	50	13.7	50	81	5	721	33	22	18	24	1.97
26480426--26481261	99	8.4	99	90	3	1076	33	22	19	24	1.97
26482239--26482355	59	2.0	59	98	0	225	14	19	35	29	1.92
26483133--26483185	25	2.0	25	82	7	61	32	11	1	54	1.47
26483568--26483873	111	2.8	109	90	3	456	29	16	20	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26488140--26488173	16	2.1	16	88	0	50	20	14	20	44	1.87
26493667--26493706	16	2.4	18	76	20	50	50	2	40	7	1.44
26498353--26498377	12	2.1	12	100	0	50	24	32	8	36	1.84
26498879--26499563	132	5.2	132	90	1	1004	30	18	24	27	1.98
26498980--26499448	44	10.7	44	64	18	181	29	18	23	27	1.98
26499658--26499714	24	2.4	24	77	16	64	31	3	7	57	1.42
26499658--26499711	12	4.5	12	77	9	56	31	3	7	57	1.44
26500023--26500183	81	2.0	81	93	2	279	23	21	20	34	1.96
26502986--26503041	21	2.7	21	88	0	85	50	16	19	14	1.79
26511268--26511319	24	2.2	24	89	0	77	55	9	1	32	1.43
26513238--26513289	24	2.2	24	89	0	77	55	9	1	32	1.43
26516573--26516672	39	2.6	38	85	4	130	48	8	5	39	1.55
26527160--26527194	17	2.0	18	88	5	54	60	2	20	17	1.49
26529194--26529233	20	2.0	20	100	0	80	30	25	10	35	1.88
26530339--26530392	21	2.7	20	81	18	60	53	0	9	37	1.33
26530576--26530605	5	6.0	5	100	0	60	20	0	0	80	0.72
26531226--26531281	27	2.2	25	81	12	60	23	14	0	62	1.31
26535779--26535851	37	2.0	36	91	0	110	16	34	2	45	1.62
26549861--26550161	67	4.5	68	85	6	382	25	22	15	36	1.93
26554776--26555138	67	5.4	66	78	4	264	26	22	15	35	1.94
26554776--26555087	67	4.7	67	78	4	272	26	23	15	34	1.94
26555496--26555677	45	4.0	45	77	4	170	36	13	19	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26558747--26558792	24	1.9	24	90	0	74	45	21	13	19	1.84
26560104--26560216	34	3.3	34	84	0	136	42	11	17	28	1.84
26560508--26560624	62	1.9	62	82	5	150	48	3	3	44	1.36
26560609--26560663	25	2.2	25	81	12	60	49	5	1	43	1.36
26573114--26573155	6	6.7	6	80	20	50	11	4	2	80	0.95
26573836--26574191	84	4.2	84	82	1	446	21	16	31	30	1.95
26582109--26582156	20	2.4	20	85	0	60	12	27	16	43	1.84
26583084--26583145	24	2.6	24	79	2	63	20	29	30	19	1.97
26584997--26585072	30	2.5	30	82	0	98	17	39	26	17	1.91
26599800--26600022	43	5.2	43	87	2	290	28	18	30	22	1.97
26603587--26603620	16	2.1	16	88	0	50	29	11	5	52	1.61
26604033--26604077	22	2.2	20	84	8	54	46	0	0	53	1.00
26604304--26604342	14	2.7	15	88	8	62	61	0	10	28	1.28
26607090--26607130	3	13.7	3	100	0	82	0	0	31	68	0.90
26610994--26611123	43	3.0	43	77	12	149	30	26	20	23	1.98
26613366--26613530	91	1.8	90	82	11	212	34	12	23	29	1.91
26614939--26614982	20	2.2	20	84	11	56	68	4	0	27	1.09
26616427--26616460	13	2.7	12	86	13	50	38	0	5	55	1.24
26617337--26617430	18	5.1	19	72	14	72	55	3	0	41	1.16
26617337--26617447	9	12.2	9	72	16	52	56	2	0	40	1.13
26617322--26617451	27	4.6	28	73	10	88	57	2	0	40	1.11
26622794--26622862	27	2.6	27	74	4	77	21	21	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26630465--26630573	38	2.8	37	73	15	87	28	17	8	45	1.77
26635040--26635104	16	4.1	16	93	0	112	18	35	7	38	1.80
26641521--26641552	15	2.1	15	94	0	55	15	6	9	68	1.36
26643311--26643361	25	2.0	25	92	0	84	49	1	3	45	1.32
26645210--26645270	11	5.4	11	72	12	52	62	3	4	29	1.32
26647074--26647526	88	5.1	84	70	10	284	27	20	19	32	1.97
26647138--26647592	44	10.2	44	76	11	370	27	21	19	32	1.97
26647074--26647592	173	2.9	173	90	4	770	27	21	19	32	1.97
26665636--26665662	12	2.2	12	100	0	54	40	14	22	22	1.90
26666798--26666863	29	2.3	29	86	0	96	24	31	25	18	1.97
26668397--26668495	31	3.4	30	70	20	100	47	8	19	25	1.76
26668326--26668495	91	1.9	88	83	6	216	47	11	17	23	1.80
26675520--26675565	17	2.7	17	80	10	58	54	0	0	45	0.99
26677560--26677593	16	2.1	17	88	5	52	64	0	5	29	1.17
26681366--26681405	19	2.2	19	86	4	55	15	0	25	60	1.35
26685557--26685593	18	2.1	18	89	0	56	29	10	29	29	1.91
26685547--26685605	27	2.2	27	87	0	82	30	10	25	33	1.89
26685562--26685619	18	3.2	18	92	0	89	27	12	25	34	1.91
26685559--26685614	27	2.1	27	82	0	67	28	12	26	32	1.93
26687082--26687134	18	2.9	18	80	5	54	56	11	1	30	1.45
26688728--26688754	14	1.9	14	100	0	54	37	0	11	51	1.37
26688724--26688784	34	1.9	32	81	15	74	36	1	8	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26688742--26688800	19	3.1	19	90	4	91	38	1	8	50	1.43
26690404--26690442	3	13.0	3	100	0	78	33	0	0	66	0.92
26692190--26692214	11	2.3	11	100	0	50	64	8	0	28	1.22
26699945--26700008	5	12.8	5	76	0	65	35	3	21	39	1.70
26703434--26703495	29	2.1	30	96	3	117	56	17	3	22	1.55
26704968--26705007	17	2.4	17	91	0	62	22	37	27	12	1.90
26708427--26708464	19	1.9	19	89	5	58	39	5	2	52	1.38
26720788--26721104	44	7.2	44	64	8	133	30	19	23	26	1.98
26720776--26721307	132	4.0	132	93	0	868	31	19	23	25	1.98
26721409--26721554	50	2.9	50	73	0	148	34	21	17	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141