genome.fa.s6.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  46  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13904243--13904508	125	2.1	124	82	4	331	31	15	16	36	1.90
13904546--13904624	34	2.4	34	81	10	83	50	16	0	32	1.45
13904567--13904697	34	3.8	34	78	6	147	45	14	1	38	1.54
13905391--13905432	13	3.2	13	96	0	75	42	19	7	30	1.78
13905391--13905442	26	2.0	26	84	3	68	46	17	9	26	1.79
13906676--13906717	18	2.4	19	80	15	54	26	0	33	40	1.56
13919074--13919125	23	2.3	23	83	3	70	44	3	1	50	1.31
13920171--13920238	23	3.2	22	78	14	61	47	0	8	44	1.34
13924408--13924440	8	4.4	8	88	11	52	60	0	0	39	0.97
13924918--13924985	10	6.9	10	79	14	63	35	4	0	60	1.17
13924931--13924985	10	5.5	11	80	20	68	34	5	0	60	1.20
13924922--13925013	20	4.8	19	74	13	75	32	6	0	60	1.22
13924919--13925025	20	5.6	19	71	16	60	35	5	0	58	1.21
13927214--13927242	13	2.1	14	93	6	51	55	10	0	34	1.34
13932270--13932445	9	20.0	9	78	6	166	32	0	21	45	1.52
13932272--13932479	79	2.6	79	96	2	375	33	0	20	46	1.51
13932629--13932675	21	2.3	21	88	3	69	48	0	8	42	1.33
13932753--13932795	21	2.1	20	86	4	59	46	0	9	44	1.35
13932542--13932861	120	2.7	120	95	0	568	46	2	9	42	1.47
13932840--13932900	20	3.1	20	77	9	63	49	0	6	44	1.28
13933910--13933940	9	3.4	9	90	0	53	25	9	22	41	1.84
13935109--13935139	15	2.1	15	93	0	53	58	22	12	6	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13935898--13935971	21	3.5	21	74	3	69	48	28	1	21	1.58
13937080--13937280	7	28.3	7	68	8	84	44	32	2	19	1.66
13938048--13938595	195	2.9	192	80	7	589	29	21	16	32	1.95
13938398--13938505	40	2.7	40	69	9	105	25	24	18	32	1.97
13938899--13938939	20	2.0	21	90	4	66	46	9	26	17	1.79
13940398--13940478	42	1.9	42	94	0	144	29	2	14	53	1.54
13940968--13941022	26	2.1	26	96	0	101	20	3	9	67	1.34
13943946--13943993	19	2.6	19	86	3	71	35	2	14	47	1.56
13944016--13944098	42	2.0	42	87	0	121	30	8	13	48	1.72
13950876--13951200	69	4.7	68	80	4	366	20	23	24	31	1.98
13950881--13951200	137	2.3	138	81	5	371	20	23	24	31	1.98
13951166--13951297	50	2.6	49	85	4	174	18	25	25	31	1.97
13951250--13951458	69	3.0	69	82	2	249	20	23	24	32	1.98
13954226--13954391	69	2.4	69	84	0	215	18	22	26	31	1.97
13962112--13962171	9	6.9	9	72	14	54	73	5	3	18	1.16
13962097--13962176	33	2.5	32	78	11	83	73	6	5	15	1.20
13962126--13962195	24	2.9	25	83	12	76	74	10	2	12	1.18
13962589--13962625	13	2.8	13	91	0	56	16	43	24	16	1.87
13965856--13965897	21	2.0	21	100	0	84	33	19	23	23	1.97
13968112--13968163	26	2.0	26	85	3	70	46	1	1	50	1.23
13972449--13972497	23	2.1	23	92	0	80	24	18	20	36	1.94
13976244--13976297	24	2.2	24	83	6	65	24	31	27	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13977758--13977802	19	2.3	19	81	11	56	48	0	13	37	1.42
13978031--13978610	285	2.0	287	88	2	862	37	6	18	37	1.77
13983489--13983524	17	2.1	18	89	5	56	55	0	2	41	1.14
13983641--13983691	23	2.2	23	82	6	59	49	5	0	45	1.26
13983649--13983697	23	2.1	23	88	7	73	46	2	0	51	1.12
13983662--13983709	23	2.1	23	88	0	69	54	2	0	43	1.12
13989430--13989467	19	2.0	19	85	10	51	44	5	2	47	1.39
13991064--13991104	19	2.2	19	86	8	57	75	2	14	7	1.12
13991855--13991897	18	2.4	18	92	0	68	30	0	0	69	0.88
13992735--13992799	19	3.4	19	76	16	80	64	3	3	29	1.23
13992749--13992818	10	7.7	9	74	15	54	68	1	2	27	1.12
13992750--13992836	28	3.1	27	81	6	111	64	1	3	31	1.17
13992739--13992820	38	2.2	38	86	4	112	67	2	3	26	1.20
13992751--13992826	18	4.2	18	68	8	64	67	1	2	28	1.12
13993201--13993401	87	2.3	85	83	7	242	31	9	21	36	1.87
13993591--13993628	14	2.6	15	91	4	60	55	0	0	44	0.99
13996044--13996097	19	2.8	19	94	0	99	37	9	16	37	1.81
13996044--13996120	38	1.9	40	87	10	113	36	7	16	38	1.78
13996304--13996348	23	2.0	23	81	0	54	22	0	15	62	1.33
14000587--14000636	26	1.9	26	95	0	91	28	30	24	18	1.97
14000615--14000718	42	2.5	42	100	0	208	33	28	15	22	1.94
14000413--14000676	101	2.6	102	93	1	449	33	27	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14000514--14000783	143	1.9	144	94	0	479	32	28	17	21	1.96
14000699--14000780	27	2.8	29	87	10	105	31	29	21	17	1.96
14004131--14004159	2	14.5	2	100	0	58	51	0	48	0	1.00
14005428--14005571	44	3.3	44	66	7	121	23	24	26	25	2.00
14005472--14005791	44	7.3	44	63	8	148	26	28	24	21	1.99
14005379--14005857	88	5.4	88	91	0	733	27	26	23	21	1.99
14005870--14005965	44	2.2	44	83	3	113	28	19	21	30	1.98
14005954--14006632	44	15.6	44	67	13	268	31	20	21	26	1.98
14005950--14006323	173	2.2	171	87	2	532	30	20	21	27	1.98
14005996--14006330	84	3.9	84	71	12	279	30	20	22	27	1.98
14006084--14006622	217	2.5	218	82	3	674	31	21	21	25	1.98
14007058--14007130	19	3.8	19	96	0	137	36	9	16	36	1.81
14007090--14007153	19	3.0	22	84	8	62	39	6	17	37	1.75
14013977--14014050	32	2.3	32	86	4	96	27	35	14	22	1.94
14014448--14014505	29	2.0	29	96	0	107	27	22	17	32	1.96
14031562--14031592	14	2.2	14	94	0	53	22	19	19	38	1.93
14032221--14032294	32	2.3	32	92	0	121	35	13	6	44	1.70
14037659--14037706	25	2.0	24	87	4	69	37	20	25	16	1.93
14037655--14037721	24	2.7	26	79	9	86	37	17	25	19	1.94
14045332--14045373	21	2.0	21	85	0	57	38	2	19	40	1.64
14049214--14049248	16	2.1	17	89	5	54	37	0	25	37	1.57
14052200--14052403	21	9.7	21	73	10	139	17	21	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14052202--14052351	42	3.6	42	85	7	214	16	18	16	48	1.82
14052203--14052403	84	2.4	84	89	2	298	17	20	15	46	1.84
14052203--14052403	42	4.8	42	79	6	194	17	20	15	46	1.84
14058180--14058453	138	2.0	138	81	2	318	31	26	21	20	1.98
14059907--14059958	26	2.0	27	85	14	74	76	5	9	7	1.14
14060106--14060135	15	2.0	15	93	0	51	53	10	13	23	1.69
14062841--14062869	6	4.8	6	100	0	58	34	31	17	17	1.93
14064757--14064805	23	2.2	23	88	3	73	40	12	20	26	1.87
14068304--14068441	27	5.1	27	92	1	206	35	21	20	23	1.96
14068278--14068443	54	3.1	54	85	2	210	34	22	20	21	1.96
14068502--14068568	33	2.0	33	100	0	134	20	5	23	49	1.71
14068539--14068596	24	2.4	25	88	5	84	18	6	25	48	1.73
14068660--14068724	27	2.4	27	83	14	82	20	24	23	32	1.98
14068678--14068756	27	3.0	26	79	5	77	20	25	22	31	1.98
14068768--14069034	32	8.4	32	78	4	218	19	21	22	36	1.95
14068765--14069020	96	2.7	96	83	2	318	19	22	22	35	1.96
14069227--14069285	28	2.1	28	87	0	82	23	25	20	30	1.98
14075616--14075656	20	2.0	20	100	0	82	39	14	4	41	1.67
14093053--14093572	44	12.0	44	85	3	671	29	17	26	25	1.98
14097621--14097742	39	3.1	39	96	3	217	44	13	4	37	1.65
14099867--14100146	27	10.4	27	86	2	366	19	16	20	43	1.88
14102363--14102398	18	1.9	19	94	5	65	22	22	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14103939--14104059	20	6.1	20	72	9	77	14	30	19	35	1.91
14105419--14105474	17	3.0	19	68	21	55	16	17	16	50	1.79
14114917--14114954	9	4.3	9	93	6	69	39	21	0	39	1.53
14114917--14114954	17	2.2	18	95	4	69	39	21	0	39	1.53
14127981--14128165	79	2.3	81	84	7	236	24	22	27	25	2.00
14127982--14128165	40	4.6	40	83	9	216	24	22	27	25	2.00
14127982--14128198	79	2.7	79	81	7	201	25	22	27	24	2.00
14141284--14141335	21	2.4	22	83	3	61	36	7	19	36	1.80
14145294--14145608	27	11.6	26	80	10	296	19	16	20	44	1.87
14145294--14145607	55	5.8	54	82	6	330	19	16	20	44	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141