genome.fa.s10.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  100  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34344308--34344385	40	2.0	40	100	0	156	34	0	10	55	1.34
34356825--34356880	23	2.5	22	83	8	69	42	1	1	53	1.21
34356868--34356937	30	2.4	30	81	15	92	42	1	2	52	1.24
34356868--34356936	29	2.3	29	79	16	79	43	1	2	52	1.25
34365987--34366086	50	2.0	50	92	0	164	38	3	12	47	1.56
34366056--34366105	18	2.8	17	78	3	55	46	0	4	50	1.20
34371554--34371588	12	2.8	12	86	4	52	37	2	0	60	1.12
34374990--34375028	12	3.1	12	85	7	51	35	15	20	28	1.93
34381542--34381577	19	1.9	18	88	5	54	44	0	0	55	0.99
34382211--34382270	26	2.4	24	83	10	75	33	1	3	61	1.22
34384586--34384646	32	1.9	32	82	0	77	31	14	8	45	1.74
34384530--34384703	90	1.9	92	84	4	235	25	15	12	45	1.81
34384899--34385054	31	5.3	30	71	19	123	44	11	19	24	1.83
34384888--34385055	57	2.9	55	86	6	210	45	11	19	23	1.82
34385066--34385141	38	2.0	38	85	12	104	61	11	15	10	1.56
34387508--34387628	30	4.1	29	84	7	145	23	27	19	28	1.99
34387512--34387628	60	2.0	60	85	0	162	23	27	19	29	1.98
34389923--34389947	6	4.2	6	100	0	50	16	0	0	84	0.63
34390398--34390447	23	2.1	24	82	10	59	56	6	22	16	1.62
34391612--34391649	14	2.7	14	91	0	67	52	5	5	36	1.47
34392111--34392178	15	4.2	15	73	23	57	45	0	0	54	0.99
34392111--34392178	16	4.2	16	78	14	68	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392117--34392191	35	2.1	35	80	11	82	46	0	1	52	1.09
34392261--34392325	18	3.4	19	73	26	57	50	0	1	47	1.10
34392331--34392390	31	2.0	30	81	15	70	48	0	3	48	1.18
34393558--34393650	19	4.9	19	69	20	54	60	1	1	37	1.11
34393563--34393617	28	2.0	28	89	7	85	65	0	1	32	1.03
34393974--34394022	21	2.3	22	82	3	64	34	2	2	61	1.19
34397097--34397248	28	5.4	28	85	3	171	31	19	16	32	1.94
34397097--34397248	56	2.7	56	86	2	198	31	19	16	32	1.94
34397100--34397275	84	2.1	84	83	6	214	31	18	17	32	1.94
34397308--34397395	28	3.0	30	77	8	101	26	18	23	31	1.97
34404702--34404726	6	4.2	6	100	0	50	84	16	0	0	0.63
34413310--34413356	21	2.4	19	76	20	51	36	14	8	40	1.77
34415931--34416082	37	4.1	37	85	1	207	33	26	11	27	1.92
34415900--34416082	73	2.5	73	84	3	233	34	26	12	25	1.92
34429151--34429189	18	2.1	19	85	9	53	41	0	15	43	1.46
34430968--34431030	22	2.9	22	90	0	90	38	11	11	39	1.76
34438760--34438796	17	2.1	18	90	5	58	43	0	0	56	0.99
34439039--34439073	16	2.2	16	90	10	54	28	5	2	62	1.32
34444540--34444573	16	2.1	17	88	5	52	58	0	2	38	1.13
34444570--34444611	21	1.9	22	85	9	59	35	2	9	52	1.47
34445470--34445494	2	12.5	2	100	0	50	52	0	0	48	1.00
34446028--34446058	12	2.5	13	94	5	55	16	19	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34452436--34452469	15	2.2	15	94	5	59	76	0	11	11	1.02
34452413--34452473	22	2.8	22	85	7	72	73	1	11	13	1.16
34452435--34452472	16	2.4	17	86	13	62	76	0	10	13	1.02
34455138--34455198	22	2.8	22	85	7	72	72	3	11	13	1.24
34455164--34455193	15	1.9	16	93	6	53	70	3	13	13	1.30
34455992--34456034	19	2.3	19	84	8	52	58	4	0	37	1.19
34456832--34456856	12	2.1	12	100	0	50	16	8	8	68	1.38
34466337--34466390	7	7.4	7	78	15	56	25	0	1	72	0.95
34466338--34466425	22	4.0	21	77	15	79	27	1	3	68	1.13
34466371--34466421	16	3.6	14	80	19	54	27	1	5	64	1.27
34466775--34466810	18	2.0	18	94	0	63	8	5	25	61	1.46
34469639--34469722	42	2.0	42	100	0	168	33	26	11	28	1.92
34471345--34471444	48	2.1	48	86	3	139	37	24	20	19	1.94
34477076--34477151	36	2.1	35	97	2	143	44	13	18	23	1.85
34477599--34477646	25	1.9	25	86	0	69	60	8	8	22	1.52
34479053--34479089	2	18.5	2	100	0	74	48	0	0	51	1.00
34486121--34486170	21	2.4	21	86	0	64	54	6	0	40	1.25
34489162--34489299	54	2.6	54	91	2	215	22	23	23	30	1.99
34489162--34489292	18	7.3	18	85	0	172	22	22	23	30	1.99
34489471--34489508	19	2.0	19	85	10	51	15	0	18	65	1.27
34496031--34496129	18	5.4	18	81	10	103	22	19	26	32	1.97
34500942--34501020	14	5.8	14	73	16	58	20	1	32	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34501004--34501054	19	2.5	20	84	12	59	13	5	39	41	1.69
34506057--34506235	53	3.4	53	92	0	297	44	18	10	26	1.82
34512522--34512559	20	1.9	20	94	0	67	34	26	26	13	1.93
34518561--34518603	9	4.7	9	82	2	50	58	0	6	34	1.25
34523445--34523522	21	3.7	21	83	6	104	37	23	14	25	1.92
34523443--34523543	42	2.4	42	93	0	166	35	24	13	25	1.93
34523443--34523544	21	4.9	21	78	7	100	35	24	13	26	1.93
34524314--34524454	41	3.4	41	76	8	119	24	25	10	39	1.88
34532307--34532449	57	2.5	58	88	3	209	44	0	2	52	1.17
34532308--34532394	26	3.2	26	71	15	75	47	0	3	49	1.18
34532613--34532643	16	1.9	16	100	0	62	25	25	6	41	1.79
34535659--34535696	18	2.1	18	100	0	76	23	21	15	39	1.92
34542631--34542668	17	2.2	17	86	9	51	63	7	7	21	1.47
34551847--34551892	19	2.4	19	85	3	56	39	13	8	39	1.75
34558198--34558244	19	2.4	20	75	3	51	40	12	4	42	1.63
34558859--34558947	28	3.2	27	82	4	90	33	23	19	23	1.97
34568395--34568445	26	2.0	26	100	0	102	50	5	3	39	1.45
34568395--34568440	16	3.2	16	66	33	50	47	6	4	41	1.49
34576379--34576473	49	1.9	49	89	0	145	18	5	30	45	1.72
34578036--34578212	88	2.0	88	100	0	354	36	25	5	32	1.80
34578587--34578668	28	3.1	27	86	10	102	51	17	18	13	1.77
34582259--34582283	13	1.9	13	100	0	50	32	4	16	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34582343--34582397	26	2.1	26	96	0	101	47	10	1	40	1.49
34583468--34583494	2	13.5	2	100	0	54	51	0	0	48	1.00
34589967--34589997	12	2.6	12	94	0	53	25	0	19	54	1.44
34590121--34590197	37	2.1	37	90	0	118	29	29	16	23	1.96
34591994--34592050	17	3.4	17	72	15	55	15	22	10	50	1.74
34593241--34593298	26	2.3	26	81	3	73	20	25	27	25	1.99
34594003--34594033	10	3.1	10	100	0	62	19	29	9	41	1.83
34610358--34610399	17	2.4	17	88	4	57	47	0	28	23	1.52
34610372--34610419	24	2.0	24	83	0	60	43	2	35	18	1.62
34613880--34613916	17	2.2	17	90	0	56	56	0	24	18	1.41
34613889--34613936	24	2.0	24	87	0	69	50	2	29	18	1.59
34614083--34614122	18	2.2	18	86	8	55	62	0	2	35	1.09
34614198--34614255	12	5.3	11	82	13	59	63	0	5	31	1.16
34614186--34614249	34	1.9	32	87	12	94	60	0	6	32	1.21
34618550--34618580	8	3.9	8	100	0	62	25	9	0	64	1.24
34628905--34628939	17	2.0	17	88	5	52	25	0	2	71	1.00
34631536--34631613	32	2.4	33	86	4	113	30	8	12	47	1.73
34636879--34637027	43	3.5	41	76	8	113	25	25	11	37	1.89
34636879--34636988	41	2.7	41	78	7	114	22	26	11	39	1.89
34637966--34638000	17	2.1	17	100	0	70	34	17	0	48	1.47
34640058--34640372	29	10.8	28	74	13	176	35	3	26	34	1.73
34640179--34640368	59	3.2	58	77	10	172	35	2	24	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34640175--34640382	29	7.1	28	83	10	186	33	1	26	37	1.68
34641459--34641490	13	2.6	12	95	5	55	40	0	3	56	1.15
34642269--34642370	6	17.2	6	69	12	68	51	1	4	41	1.34
34642285--34642370	41	2.1	41	86	4	120	52	0	5	41	1.25
34642274--34642351	35	2.2	35	84	4	95	53	1	5	39	1.31
34642269--34642370	18	5.4	18	76	16	91	51	1	4	41	1.34
34642723--34643746	206	5.0	206	92	1	1606	21	22	20	35	1.96
34645182--34645242	6	10.2	6	79	10	54	1	8	4	85	0.80
34645182--34645234	13	4.2	12	83	9	61	1	7	5	84	0.82
34645177--34645235	19	3.1	19	80	9	66	3	6	6	83	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135