genome.fa.s10.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  28  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11154306--11154368	32	2.0	32	87	6	92	34	22	11	31	1.89
11154338--11154547	52	4.0	52	93	0	348	35	21	15	27	1.94
11156552--11156688	69	2.0	66	86	11	186	13	22	19	43	1.86
11156515--11156688	23	7.5	23	77	10	131	13	23	18	43	1.86
11157381--11157416	18	2.1	16	90	10	54	33	13	0	52	1.41
11166382--11166434	29	1.9	28	88	11	83	33	18	3	43	1.68
11169979--11170255	29	9.4	28	65	29	109	33	2	32	31	1.70
11169949--11170253	59	5.2	59	90	1	477	33	2	32	32	1.71
11172125--11172183	11	5.3	11	76	8	57	57	5	0	37	1.21
11172126--11172203	6	13.7	6	73	10	56	56	3	1	38	1.26
11172126--11172232	17	6.3	17	76	3	90	55	6	1	36	1.37
11177104--11177133	2	15.0	2	100	0	60	50	0	0	50	1.00
11178435--11178573	42	3.3	42	84	2	179	28	25	19	26	1.99
11180484--11180532	22	2.2	22	81	3	53	28	0	6	65	1.16
11182552--11182608	24	2.4	24	84	0	69	14	24	26	35	1.93
11182527--11182650	65	1.9	65	91	0	203	16	24	22	37	1.94
11182592--11182756	41	4.0	41	81	1	197	20	23	18	38	1.94
11182596--11182756	82	2.0	82	87	0	232	19	22	18	38	1.93
11184024--11184154	56	2.3	57	80	7	142	40	7	12	38	1.72
11185320--11185473	41	3.7	41	88	0	218	22	32	20	24	1.98
11193815--11194012	95	2.1	95	87	1	281	40	9	10	39	1.72
11200211--11200245	12	2.9	12	82	0	52	25	5	14	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11204283--11204307	2	12.5	2	100	0	50	52	0	0	48	1.00
11207597--11207623	4	6.8	4	100	0	54	51	0	0	48	1.00
11207891--11207946	18	3.1	17	76	23	53	55	1	0	42	1.10
11210787--11210824	15	2.5	15	86	0	58	15	10	60	13	1.59
11210924--11210955	6	5.3	6	100	0	64	34	0	15	50	1.45
11215424--11215458	17	2.0	18	88	5	54	31	2	0	65	1.07
11218423--11218489	26	2.6	25	75	15	64	35	1	0	62	1.04
11218477--11218518	22	2.0	22	90	4	68	35	4	0	59	1.19
11219476--11219516	8	5.1	8	85	11	57	36	0	0	63	0.95
11219650--11219690	15	2.5	17	76	19	50	60	4	2	31	1.30
11227017--11227075	24	2.5	24	81	10	59	37	5	0	57	1.21
11227049--11227194	58	2.5	58	84	8	190	45	1	1	51	1.18
11227364--11227419	16	3.5	16	90	4	87	26	32	7	33	1.84
11227478--11227540	28	2.2	28	81	10	74	44	6	23	25	1.77
11231562--11231637	33	2.4	30	83	12	107	32	7	48	10	1.66
11231571--11231643	33	2.2	33	95	0	128	30	9	49	10	1.70
11237225--11237276	25	2.0	26	82	10	63	50	7	7	34	1.60
11237575--11237608	17	2.0	17	94	0	59	58	0	2	38	1.13
11238501--11238568	8	8.4	8	73	20	61	50	0	0	50	1.00
11238504--11238571	9	7.1	9	75	17	57	47	0	0	52	1.00
11238490--11238560	31	2.3	31	97	0	133	50	0	0	49	1.00
11238509--11238552	23	1.9	23	85	0	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11238504--11238580	39	1.9	40	89	5	120	48	0	0	51	1.00
11247811--11247906	21	4.8	21	70	20	71	7	8	19	64	1.44
11247862--11247898	17	2.2	17	90	9	58	5	2	21	70	1.20
11247933--11248040	12	9.3	12	73	8	80	8	5	18	67	1.36
11247933--11248038	24	4.6	23	78	7	108	8	5	18	66	1.38
11250592--11250646	29	1.9	28	82	10	67	21	27	5	45	1.74
11253918--11253955	17	2.4	17	86	8	53	15	18	0	65	1.27
11257867--11257922	29	2.0	29	82	3	69	33	12	17	35	1.88
11259907--11259971	10	6.8	10	73	15	57	72	1	0	26	0.94
11259907--11259972	20	3.5	19	74	17	66	71	1	0	27	0.95
11259907--11259974	19	3.6	19	73	11	68	72	1	0	26	0.94
11259934--11259996	26	2.4	27	82	12	78	69	0	1	28	0.97
11259924--11259996	25	2.7	26	83	14	78	69	1	1	27	1.04
11260088--11260331	90	2.7	91	83	6	295	33	9	19	38	1.83
11261482--11261536	28	2.0	28	82	10	69	32	10	5	50	1.60
11261546--11261672	68	1.9	68	80	12	154	18	18	3	59	1.51
11261804--11261833	15	2.0	15	93	0	51	23	6	0	70	1.11
11267775--11267829	21	2.7	20	77	2	56	30	14	20	34	1.92
11268861--11269140	29	9.7	27	67	15	87	40	2	25	31	1.70
11268860--11269135	58	4.7	58	79	10	271	40	2	25	31	1.70
11268885--11269096	116	1.8	116	87	4	320	40	3	24	31	1.71
11269034--11269153	29	4.2	28	73	9	107	45	1	22	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11268860--11269164	87	3.5	85	73	14	255	40	2	24	32	1.69
11269132--11269293	30	5.4	30	75	10	145	41	3	18	36	1.68
11269133--11269293	60	2.7	60	81	5	204	41	3	18	36	1.69
11270004--11270065	32	2.0	32	93	3	108	25	20	0	53	1.46
11278511--11278732	28	7.7	28	72	16	111	38	3	25	32	1.72
11278486--11278710	59	3.9	56	83	9	265	39	2	25	32	1.70
11278541--11278972	30	14.6	30	73	13	213	39	2	22	35	1.67
11278547--11278780	29	8.1	27	75	9	135	40	2	23	33	1.67
11278488--11278762	117	2.4	117	78	9	294	38	2	25	33	1.71
11278671--11278982	90	3.5	88	78	12	282	39	2	21	36	1.66
11278664--11278982	60	5.4	59	81	8	337	39	2	21	36	1.66
11278726--11278983	30	8.6	30	76	10	224	39	2	20	38	1.65
11279692--11279755	32	2.0	32	87	3	94	23	25	0	51	1.48
11280717--11280754	17	2.3	17	95	4	69	55	0	0	44	0.99
11292177--11292280	51	2.0	51	100	0	208	21	17	21	40	1.91
11295079--11295120	7	5.4	8	91	8	61	66	2	0	30	1.04
11298115--11298191	36	2.2	35	83	6	93	58	6	9	25	1.53
11301990--11302080	40	2.3	40	88	3	139	28	21	17	31	1.96
11302006--11302073	21	3.3	21	64	22	54	26	23	13	36	1.92
11306925--11307016	40	2.3	39	90	5	141	28	20	17	33	1.95
11308397--11308457	27	2.2	27	85	8	79	49	1	0	49	1.10
11312683--11312716	4	8.5	4	100	0	68	50	23	0	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11312950--11313188	118	2.0	119	95	1	435	40	28	7	23	1.81
11313204--11313244	2	20.5	2	100	0	82	0	48	0	51	1.00
11326350--11326377	3	9.3	3	100	0	56	67	0	32	0	0.91
11331307--11331366	20	2.9	20	72	16	59	45	0	0	55	0.99
11346520--11346582	26	2.4	26	80	17	76	63	1	0	34	1.04
11348262--11348304	21	2.0	21	86	4	59	30	0	37	32	1.58
11364783--11364858	21	3.9	20	73	11	59	32	5	0	61	1.18
11364777--11364924	58	2.5	59	80	13	173	31	4	1	63	1.21
11364777--11364898	55	2.1	58	85	8	162	31	4	0	62	1.22
11364852--11364923	19	3.7	19	80	8	74	30	2	2	63	1.22
11364780--11364923	10	14.9	10	70	13	79	31	4	1	62	1.23
11364777--11364946	10	17.6	10	70	14	76	31	4	1	63	1.20
11364842--11364945	40	2.6	39	75	14	104	30	3	1	63	1.23
11364960--11364998	13	3.0	13	88	7	53	23	0	2	74	0.94
11366607--11366652	22	2.1	22	83	0	56	69	2	21	6	1.22
11378378--11378454	39	2.0	39	92	0	127	23	10	15	50	1.74
11388876--11388906	13	2.4	13	94	0	53	32	0	3	64	1.09
11388895--11388947	26	2.0	26	92	7	90	33	0	0	66	0.92
11388902--11388954	22	2.3	22	80	6	61	39	0	0	60	0.97
11391524--11391562	19	2.1	18	85	4	51	38	2	12	46	1.56
11392732--11392757	3	8.7	3	100	0	52	34	0	0	65	0.93
11404489--11404546	27	2.1	27	100	0	116	43	22	6	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11412383--11412409	3	9.0	3	100	0	54	33	66	0	0	0.92
11424458--11424517	24	2.4	25	75	13	61	33	5	1	60	1.29
11424500--11424588	37	2.4	37	85	9	110	51	2	1	44	1.21
11425265--11425309	6	7.5	6	100	0	90	17	33	0	48	1.48
11438351--11438387	6	6.2	6	100	0	74	32	0	67	0	0.91
11441023--11441074	14	3.4	14	78	17	59	57	1	0	40	1.10
11442638--11442683	23	2.0	22	83	4	56	28	6	2	63	1.31
11443728--11443766	18	2.1	19	90	4	62	64	0	0	35	0.94
11449355--11449398	3	14.7	3	100	0	88	68	0	31	0	0.90
11457600--11457634	2	17.5	2	100	0	70	0	48	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135