genome.fa.s10.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  94  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31836060--31836103	5	8.8	5	92	0	61	40	11	40	6	1.68
31836056--31836103	10	4.8	10	89	0	69	41	10	39	8	1.69
31836056--31836104	15	3.3	15	88	0	71	40	10	38	10	1.73
31840427--31840565	50	2.7	51	73	13	142	28	21	18	31	1.97
31840580--31840694	46	2.5	46	86	0	167	24	19	24	32	1.98
31840657--31840957	83	3.7	83	79	8	280	26	14	27	31	1.95
31840611--31840922	125	2.5	122	81	6	340	27	14	26	31	1.95
31840681--31840893	42	5.2	41	82	4	236	26	16	25	30	1.97
31840827--31841170	78	4.4	77	78	7	291	25	17	25	32	1.96
31840867--31841172	40	7.8	40	69	8	162	24	16	24	33	1.96
31840828--31841153	156	2.1	156	81	4	397	25	16	25	32	1.96
31841495--31841939	49	9.2	47	78	6	381	20	29	17	32	1.95
31841561--31841933	48	7.7	47	80	5	354	20	30	17	31	1.96
31841663--31841939	144	1.9	144	95	0	500	18	29	18	32	1.95
31841510--31841934	193	2.2	193	84	4	527	20	29	16	32	1.95
31842663--31842712	21	2.4	21	86	0	73	28	20	20	32	1.97
31845734--31845818	23	3.7	23	80	4	91	41	17	11	29	1.85
31845830--31845859	15	2.0	15	93	0	51	73	3	0	23	0.98
31849769--31849851	7	11.9	7	72	10	53	21	16	24	37	1.94
31849770--31849864	14	6.8	14	77	7	68	24	16	22	36	1.94
31849766--31849850	21	4.0	21	78	3	73	23	17	23	35	1.95
31849819--31849872	21	2.6	21	81	0	63	22	20	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31851177--31851354	49	3.6	49	73	3	124	20	29	16	33	1.95
31851178--31851354	98	1.8	98	82	0	228	19	29	16	33	1.94
31854191--31854310	58	2.1	57	89	6	179	31	0	20	48	1.50
31854809--31854876	30	2.3	30	87	10	95	41	1	5	51	1.35
31856335--31856367	17	1.9	17	88	11	50	18	33	15	33	1.92
31862623--31862699	34	2.3	34	78	14	88	24	12	12	49	1.77
31869297--31869350	28	1.9	28	84	0	72	46	24	9	20	1.79
31870274--31870323	22	2.3	22	85	0	64	16	16	46	22	1.84
31872462--31872521	26	2.2	25	77	13	66	11	20	3	65	1.39
31879029--31879074	19	2.4	18	82	13	56	52	0	36	10	1.37
31905848--31905925	17	4.6	17	74	4	50	23	15	12	48	1.79
31920071--31920118	12	4.0	12	78	5	53	72	0	10	16	1.10
31920071--31920118	17	2.7	18	83	6	62	72	0	10	16	1.10
31922135--31922187	21	2.6	21	88	8	74	30	24	15	30	1.95
31936242--31936289	17	2.8	17	80	0	60	50	12	18	18	1.78
31936241--31936297	17	3.4	17	71	9	53	49	10	22	17	1.77
31956227--31956268	21	2.0	22	85	4	59	64	4	19	11	1.44
31958237--31958434	56	3.5	56	84	0	243	33	26	15	23	1.95
31958270--31958458	56	3.4	56	82	2	175	32	25	17	24	1.97
31958726--31958755	9	3.3	9	100	0	60	50	0	0	50	1.00
31966405--31966448	19	2.3	19	80	7	54	65	2	2	29	1.16
31970228--31970267	18	2.3	17	82	4	53	57	0	12	30	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31971859--31973743	941	2.0	941	98	0	3617	31	18	19	30	1.96
31973864--31973909	18	2.5	19	72	10	51	56	6	0	36	1.25
31975145--31975178	8	4.2	8	100	0	68	61	0	11	26	1.30
31976523--31976558	13	2.8	13	91	0	54	61	13	25	0	1.33
31977042--31977083	12	3.5	12	78	12	50	64	2	33	0	1.07
31977532--31977576	17	2.6	18	82	10	58	17	15	15	51	1.77
31977518--31977576	18	3.3	18	79	9	68	18	15	13	52	1.74
31977923--31977965	21	2.0	21	95	0	77	34	18	20	25	1.96
31978820--31979490	335	2.0	334	93	0	1146	29	18	22	29	1.97
31982961--31983012	26	2.0	26	100	0	104	34	11	23	30	1.90
31983604--31983655	21	2.5	21	80	0	59	25	13	26	34	1.93
31988208--31988279	36	2.0	36	97	0	135	36	2	31	29	1.72
31993081--31993111	14	2.1	15	94	5	55	77	0	6	16	0.97
32005475--32005536	32	1.9	32	96	0	115	29	9	22	38	1.86
32008544--32008574	5	6.2	5	96	0	53	25	16	0	58	1.38
32013664--32013700	18	2.1	18	94	0	65	62	5	8	24	1.44
32013623--32013673	6	9.2	6	83	12	56	50	13	3	31	1.60
32013626--32013696	27	2.5	29	93	4	119	54	9	5	29	1.56
32014192--32014218	13	2.1	13	100	0	54	77	7	7	7	1.12
32021851--32021911	18	3.4	18	86	0	86	37	24	9	27	1.87
32021863--32021926	18	3.8	17	85	6	69	39	25	7	28	1.83
32024288--32024376	21	4.1	21	78	5	63	56	7	22	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32042718--32042745	14	2.0	14	100	0	56	21	14	21	42	1.88
32046279--32046329	26	2.0	26	92	0	84	29	25	17	27	1.98
32055322--32055377	26	2.2	26	93	0	94	30	25	21	23	1.99
32055367--32055451	38	2.3	38	83	6	111	31	17	22	28	1.97
32058528--32058772	36	6.8	36	85	0	294	25	15	22	36	1.93
32058711--32058795	36	2.4	36	82	4	91	22	12	22	42	1.87
32059037--32059075	19	2.1	19	100	0	78	25	20	10	43	1.83
32063890--32063943	24	2.2	24	83	6	65	0	42	0	57	0.98
32078977--32079691	42	16.8	42	81	4	607	23	16	26	33	1.96
32078977--32079685	84	8.3	84	80	4	699	23	16	27	33	1.95
32078977--32079691	126	5.6	127	81	4	717	23	16	26	33	1.96
32079738--32080214	97	4.9	97	78	3	436	24	18	20	36	1.95
32079730--32080214	194	2.5	196	79	4	512	24	19	19	36	1.95
32082950--32082979	15	1.9	16	93	6	53	73	3	20	3	1.12
32082972--32083016	23	2.0	23	91	8	74	68	4	17	8	1.32
32086408--32086520	58	1.9	58	82	3	138	13	23	12	51	1.74
32088742--32088866	61	2.0	61	96	0	232	35	20	13	31	1.91
32094105--32094330	111	2.0	111	100	0	452	25	23	19	31	1.98
32095192--32095225	15	2.3	15	89	0	50	2	23	0	73	0.97
32095169--32095223	18	3.1	17	77	17	58	3	30	0	65	1.10
32105196--32105239	17	2.6	17	79	13	54	63	11	9	15	1.51
32105632--32105684	15	3.5	15	87	10	72	5	24	0	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32118719--32118770	18	2.8	19	78	16	56	59	1	34	3	1.27
32127293--32127356	30	2.1	30	85	0	83	32	28	14	25	1.94
32127303--32127369	30	2.2	30	81	0	80	35	31	10	22	1.88
32132740--32132772	12	3.0	11	87	12	50	33	0	3	63	1.10
32141260--32141430	23	7.4	23	79	2	173	47	11	5	35	1.61
32141281--32141430	46	3.2	46	87	0	210	48	10	6	35	1.63
32141260--32141430	69	2.5	70	82	3	195	47	11	5	35	1.61
32143365--32143404	21	1.9	21	94	0	71	20	27	22	30	1.98
32149930--32150024	30	3.0	30	89	6	127	21	8	10	60	1.56
32164091--32164141	18	2.8	18	87	0	75	47	3	31	17	1.66
32164953--32164978	13	2.0	13	100	0	52	38	30	23	7	1.83
32184313--32184407	48	2.0	48	100	0	190	33	2	29	34	1.70
32189334--32189379	24	1.9	24	82	8	58	45	17	10	26	1.81
32189966--32190012	21	2.2	20	82	10	58	0	29	2	68	1.02
32199523--32200015	267	1.8	266	87	1	727	32	12	19	35	1.89
32202090--32202162	21	3.5	21	100	0	146	15	17	30	36	1.91
32212736--32212776	20	2.2	20	86	8	59	43	2	0	53	1.13
32217465--32217602	37	3.7	37	92	0	222	38	29	18	13	1.89
32217484--32217546	21	3.2	21	65	28	57	39	31	17	11	1.85
32224937--32224961	12	2.1	12	100	0	50	36	8	16	40	1.77
32228326--32228357	10	3.4	10	87	12	50	37	0	0	62	0.95
32232861--32232903	17	2.5	17	100	0	86	27	13	32	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32235237--32235292	21	2.7	21	83	5	60	14	14	30	41	1.85
32245787--32245823	18	2.1	18	94	0	65	29	16	35	18	1.93
32249487--32249516	12	2.4	13	88	11	53	10	6	13	70	1.34
32256027--32256160	7	19.6	7	70	4	85	38	5	5	49	1.52
32256025--32256160	14	9.9	14	76	4	98	38	5	6	49	1.53
32256041--32256160	20	5.8	20	77	3	87	38	5	5	50	1.51
32256061--32256133	27	2.7	27	82	0	83	38	4	6	50	1.48
32256112--32256172	27	2.3	27	79	0	68	37	11	6	44	1.67
32257216--32257256	20	2.0	20	85	4	55	39	0	0	60	0.96
32264019--32264071	25	2.1	26	86	10	74	15	11	26	47	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135