genome.fa.s10.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  97  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33104902--33104994	21	4.3	21	71	14	73	67	2	5	24	1.22
33105034--33105075	15	2.8	15	82	10	50	73	7	2	16	1.15
33105786--33106380	45	13.2	45	80	4	569	27	16	24	31	1.96
33105806--33106380	90	6.4	90	82	5	633	27	16	24	31	1.96
33106487--33106985	147	3.4	147	79	3	468	20	23	15	40	1.90
33106416--33106985	49	11.6	49	77	3	383	19	23	15	41	1.90
33117338--33119594	932	2.4	921	88	3	3282	39	18	14	28	1.90
33119554--33119583	15	2.0	15	100	0	60	60	13	13	13	1.60
33119603--33123936	897	4.8	901	81	7	4870	39	17	14	28	1.89
33123001--33123030	15	2.0	15	93	0	51	60	10	13	16	1.59
33121886--33124041	890	2.4	892	86	6	2913	40	16	14	27	1.88
33124275--33124304	15	2.0	15	93	0	51	60	10	13	16	1.59
33123706--33124379	338	2.0	335	89	2	1019	41	18	14	24	1.88
33125201--33125239	15	2.8	14	85	11	53	66	7	10	15	1.43
33126288--33126317	15	2.0	15	93	0	51	60	10	13	16	1.59
33127213--33127251	15	2.8	14	85	11	53	66	7	10	15	1.43
33128156--33128184	15	1.9	15	100	0	58	62	10	13	13	1.55
33125874--33132164	933	6.8	930	87	3	8533	39	17	14	28	1.89
33130007--33130035	15	1.9	15	100	0	58	62	6	13	17	1.52
33131847--33131886	15	2.7	15	92	0	62	62	10	10	17	1.53
33135957--33136001	15	3.0	15	96	0	81	62	13	11	13	1.55
33138773--33138828	18	3.2	18	73	19	55	1	19	8	69	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33150887--33150969	42	2.0	42	92	0	139	21	6	16	55	1.63
33157437--33157479	18	2.4	17	85	11	59	32	6	9	51	1.61
33158627--33158661	15	2.3	15	95	0	61	25	0	37	37	1.57
33162410--33162610	49	4.1	48	76	4	204	20	29	16	32	1.95
33162405--33162610	98	2.1	98	86	1	279	21	29	16	32	1.95
33163496--33163558	8	7.1	8	75	18	54	3	20	0	76	0.93
33168255--33168306	19	2.7	19	72	0	50	51	9	3	34	1.53
33168263--33168445	70	2.5	70	86	6	233	51	9	9	30	1.65
33169634--33169666	11	3.1	11	86	8	50	78	0	0	21	0.75
33171006--33171058	26	2.0	28	85	14	76	79	0	16	3	0.88
33170998--33171057	14	4.5	14	74	16	56	76	0	20	3	0.92
33170998--33171057	20	3.1	19	71	20	52	76	0	20	3	0.92
33172026--33172084	30	2.0	30	100	0	118	32	10	30	27	1.89
33173595--33173633	19	2.0	20	85	5	53	64	10	15	10	1.50
33181221--33181270	20	2.5	20	81	15	50	42	14	0	44	1.44
33181542--33181579	18	2.1	18	100	0	76	28	34	5	31	1.80
33187298--33187335	20	2.0	20	89	5	60	47	10	13	28	1.76
33196173--33196245	31	2.4	31	80	0	83	21	24	20	32	1.97
33204657--33204712	28	2.0	28	96	0	103	23	32	16	28	1.96
33205727--33205766	18	2.2	19	95	4	73	30	10	5	55	1.54
33205984--33206166	90	2.0	90	86	0	249	34	15	21	27	1.94
33212129--33212245	62	1.9	61	82	5	148	49	5	3	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33217100--33217144	19	2.4	19	81	7	56	37	0	4	57	1.19
33217941--33218000	21	2.9	22	87	7	72	16	10	1	71	1.21
33217952--33218000	21	2.3	22	92	3	82	16	8	2	73	1.16
33219191--33219230	21	1.9	21	94	0	71	42	7	17	32	1.77
33224823--33224867	19	2.4	19	81	7	56	37	0	4	57	1.19
33225668--33225721	19	2.8	20	80	11	67	14	7	1	75	1.09
33242479--33242505	8	3.4	8	100	0	54	33	25	0	40	1.56
33242977--33243015	21	1.9	21	84	5	53	41	15	10	33	1.81
33252269--33252391	51	2.4	51	85	4	158	26	28	14	30	1.95
33264802--33265041	52	4.4	56	81	9	168	33	22	15	28	1.95
33264861--33265041	52	3.5	52	90	0	272	34	23	14	26	1.94
33266554--33266839	52	5.5	52	88	1	396	34	23	15	26	1.95
33266554--33266839	156	1.8	156	90	3	459	34	23	15	26	1.95
33276373--33276413	22	1.9	21	85	5	55	56	0	0	43	0.99
33278104--33278204	31	3.2	30	81	14	98	46	0	0	53	1.00
33282810--33282852	19	2.3	19	84	8	52	60	2	0	37	1.10
33283354--33283423	34	2.1	34	94	0	122	30	25	8	35	1.86
33284388--33284439	13	4.1	13	81	13	56	76	0	5	17	0.97
33284400--33284442	6	7.0	6	84	5	50	76	0	6	16	0.99
33287997--33288039	19	2.3	19	84	8	52	58	2	0	39	1.11
33288013--33288068	30	1.9	29	85	7	78	57	5	0	37	1.22
33290660--33290709	16	2.9	16	85	8	64	58	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33292608--33292660	23	2.4	22	78	9	63	26	15	3	54	1.57
33293596--33293646	25	2.0	25	100	0	102	27	11	7	52	1.65
33296907--33296954	19	2.7	19	81	9	57	2	18	2	77	0.97
33307450--33307497	19	2.7	19	81	9	57	2	18	2	77	0.97
33308549--33308581	13	2.3	15	90	10	52	0	33	0	66	0.92
33321388--33321426	19	2.0	20	95	5	71	20	25	7	46	1.77
33337716--33337761	24	1.9	24	82	8	58	45	17	10	26	1.81
33338400--33338486	8	11.5	8	69	20	62	1	36	0	62	1.03
33338400--33338482	12	7.7	12	68	21	67	1	37	0	61	1.04
33338402--33338482	42	1.9	42	92	0	135	1	37	0	61	1.04
33338402--33338469	21	3.2	21	93	0	118	1	38	0	60	1.06
33338476--33338509	15	2.3	15	89	0	50	2	41	8	47	1.50
33354696--33354721	6	4.3	6	100	0	52	84	0	15	0	0.62
33359952--33359994	16	2.6	17	81	3	52	81	6	9	2	0.95
33376166--33376223	18	2.9	21	67	15	59	29	25	15	29	1.96
33377398--33377440	14	3.0	14	83	12	52	16	4	2	76	1.05
33383465--33383494	11	2.7	11	100	0	60	16	10	16	56	1.66
33387933--33387962	12	2.5	12	94	0	51	33	33	20	13	1.91
33406291--33406318	12	2.3	12	100	0	56	57	17	0	25	1.41
33408569--33408599	15	2.1	14	94	5	53	19	29	6	45	1.75
33426471--33426504	17	2.0	17	88	0	50	14	20	32	32	1.93
33434685--33434760	37	2.1	35	83	16	93	42	1	1	55	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33434685--33434760	12	6.8	11	72	19	52	42	1	1	55	1.16
33440517--33440561	21	2.1	21	84	8	56	22	2	13	62	1.42
33444320--33444474	81	1.9	80	80	6	179	61	0	23	14	1.38
33447083--33447187	55	1.9	55	86	0	147	29	25	18	26	1.98
33459505--33459551	12	3.9	12	77	5	51	70	2	27	0	0.99
33470346--33470393	17	2.8	17	79	20	55	25	18	6	50	1.70
33470346--33470400	17	3.2	17	76	19	51	25	18	7	49	1.73
33475668--33475731	30	2.1	30	85	0	83	9	14	23	53	1.69
33477574--33477740	58	2.9	58	83	7	223	53	1	1	43	1.18
33487110--33487148	17	2.3	17	86	0	51	53	2	28	15	1.55
33487431--33487477	21	2.2	21	92	0	76	57	12	29	0	1.36
33497858--33497902	21	2.1	21	83	0	54	53	13	33	0	1.40
33508632--33508995	126	2.9	123	90	2	577	39	10	7	42	1.69
33522325--33522349	11	2.3	11	100	0	50	48	0	8	44	1.32
33525721--33525756	12	3.0	12	87	0	54	47	5	41	5	1.50
33537387--33537515	51	2.5	51	84	0	168	31	24	14	29	1.95
33539858--33539939	40	2.0	40	95	0	146	31	25	15	26	1.96
33543587--33543676	28	3.2	28	75	10	76	32	4	31	32	1.78
33543698--33543774	39	2.1	37	80	11	86	38	3	19	37	1.70
33543615--33543864	121	2.0	122	86	4	342	38	3	24	33	1.71
33543735--33543858	29	4.4	27	75	15	92	40	3	24	32	1.71
33543836--33543925	30	3.0	30	83	6	128	42	0	17	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33543832--33543962	60	2.2	60	86	2	185	40	0	21	38	1.53
33543832--33543981	58	2.5	59	78	12	155	39	0	20	40	1.57
33545138--33545182	15	3.0	16	81	15	60	42	2	0	55	1.12
33545803--33545846	17	2.5	17	81	3	52	50	4	0	45	1.22
33545800--33545844	23	2.0	23	86	8	65	48	4	0	46	1.22
33546366--33546654	133	2.2	133	83	5	352	21	24	17	37	1.94
33558745--33558818	38	1.9	38	91	0	121	40	4	22	32	1.73
33558779--33559061	30	9.2	30	66	19	120	37	4	25	33	1.75
33558832--33558950	29	4.1	28	73	15	91	34	5	27	32	1.79
33558929--33559061	60	2.2	60	90	2	205	37	3	23	35	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135