genome.fa.s10.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  134  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43218012--43218225	59	3.6	57	77	8	196	35	4	21	39	1.72
43220351--43220392	20	2.0	21	90	4	68	38	9	16	35	1.81
43220359--43220407	20	2.5	20	79	0	53	40	10	14	34	1.79
43225387--43225411	6	4.2	6	100	0	50	0	16	36	48	1.46
43232828--43232852	2	12.5	2	100	0	50	52	48	0	0	1.00
43233147--43233180	2	17.0	2	93	0	59	52	0	0	47	1.00
43234264--43234295	17	1.9	16	93	6	55	15	3	25	56	1.54
43234859--43234889	6	5.0	6	96	4	53	80	16	0	3	0.83
43236947--43236980	2	17.0	2	93	0	59	0	47	2	50	1.16
43252435--43252528	30	3.1	30	87	6	143	57	10	4	27	1.51
43252863--43253054	92	2.1	92	100	0	384	32	21	16	29	1.96
43254623--43254672	18	2.9	17	72	16	50	66	6	0	28	1.15
43256290--43256335	16	2.9	16	93	0	74	41	4	28	26	1.74
43256290--43256348	16	3.8	15	86	6	57	42	5	23	28	1.75
43257870--43257913	12	3.5	12	77	22	54	43	15	20	20	1.88
43275189--43275235	24	1.9	25	86	4	69	48	21	0	29	1.50
43298340--43298383	13	3.5	12	84	9	52	43	0	50	6	1.29
43299166--43299210	23	1.9	24	86	4	65	15	20	17	46	1.84
43299334--43299377	22	2.0	22	82	8	54	36	13	15	34	1.87
43316786--43316822	16	2.3	16	90	0	56	64	2	2	29	1.21
43317538--43317591	12	3.8	13	74	25	56	42	0	1	55	1.10
43317522--43317598	29	2.6	30	89	4	111	45	1	2	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43321443--43321505	31	2.0	31	84	0	81	28	19	26	25	1.98
43326521--43326585	31	2.1	32	82	2	78	26	10	10	52	1.69
43334632--43334661	3	10.3	3	92	7	53	30	0	0	70	0.88
43339727--43339818	11	8.2	11	68	10	53	6	6	19	67	1.36
43339722--43339806	33	2.6	32	79	7	98	7	7	20	65	1.40
43339799--43339891	44	2.2	44	81	13	113	11	3	18	66	1.36
43339997--43340079	38	2.2	37	79	14	89	27	0	7	65	1.19
43350031--43350085	28	2.0	27	86	10	76	21	5	18	54	1.63
43359355--43359383	2	14.5	2	100	0	58	48	0	0	51	1.00
43377413--43377446	2	17.0	2	93	0	59	47	0	2	50	1.16
43378120--43378195	23	3.1	23	76	10	71	27	5	27	39	1.78
43378204--43378244	21	1.9	22	90	5	66	34	0	19	46	1.50
43380228--43380361	59	2.3	59	79	3	137	41	6	20	32	1.78
43380284--43380451	89	1.9	89	83	4	223	36	5	22	35	1.79
43380314--43380476	30	5.5	29	75	9	107	36	4	20	37	1.75
43380314--43380477	59	2.7	59	80	5	161	36	4	21	37	1.75
43380339--43380485	30	4.9	30	78	4	127	34	4	23	37	1.76
43381293--43381354	22	2.9	21	77	15	72	22	16	3	58	1.52
43382119--43382174	25	2.2	25	87	0	76	23	10	46	19	1.81
43382435--43382503	17	3.9	17	80	10	75	50	7	2	39	1.45
43389667--43389771	12	9.3	12	75	12	71	7	5	18	68	1.34
43389726--43389778	12	4.4	12	90	0	70	5	1	22	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43400890--43400935	16	2.8	17	77	6	51	36	21	4	36	1.74
43402451--43402487	4	9.2	4	93	0	65	24	0	24	51	1.49
43408515--43408582	13	5.6	12	76	13	50	52	1	0	45	1.09
43412829--43412900	25	2.8	25	78	4	81	9	12	13	63	1.51
43415295--43415330	11	3.4	11	84	7	56	38	0	2	58	1.13
43419656--43419719	31	2.1	31	82	11	78	25	10	10	53	1.68
43422140--43422175	15	2.3	16	90	4	56	22	0	2	75	0.94
43422132--43422175	16	2.8	16	86	10	63	22	0	2	75	0.92
43422128--43422176	15	3.3	15	76	23	50	24	0	2	73	0.94
43427138--43427168	12	2.6	12	94	0	53	29	19	16	35	1.93
43431152--43431186	14	2.5	14	100	0	70	0	28	0	71	0.86
43433098--43433122	12	2.1	12	100	0	50	40	28	0	32	1.57
43445462--43445518	15	3.6	15	83	9	69	84	1	14	0	0.71
43445462--43445518	17	3.5	17	80	17	68	84	1	14	0	0.71
43445478--43445520	18	2.4	18	92	3	70	83	0	16	0	0.64
43446397--43446623	49	4.6	49	74	0	202	35	17	28	18	1.94
43446905--43446993	40	2.2	39	90	4	133	33	21	14	30	1.93
43446973--43447013	20	2.0	20	86	9	57	29	19	12	39	1.88
43446993--43448521	40	39.2	40	73	11	965	32	24	17	26	1.97
43446993--43448562	79	20.1	79	75	10	597	32	24	17	26	1.97
43447325--43447460	68	2.0	68	89	0	209	30	22	20	25	1.98
43447468--43448539	276	3.9	271	77	9	802	31	24	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43447468--43448561	79	13.9	79	77	7	693	31	24	17	26	1.97
43447924--43448561	39	16.3	40	71	13	155	30	24	18	25	1.98
43448439--43448693	132	1.9	133	81	10	308	32	23	18	25	1.97
43450779--43450835	19	2.8	21	76	13	64	24	15	0	59	1.36
43451719--43451774	19	2.7	20	83	13	69	44	3	10	41	1.56
43451734--43451773	19	2.1	19	95	0	71	50	2	10	37	1.50
43452308--43452346	15	2.6	15	87	0	51	56	0	0	43	0.99
43452892--43452972	30	2.7	30	92	0	126	54	14	6	24	1.63
43455096--43455141	22	2.1	22	83	0	56	17	4	4	73	1.15
43455093--43455149	25	2.3	24	81	3	60	19	3	3	73	1.12
43456823--43456886	25	2.5	26	80	10	69	56	0	1	42	1.09
43465090--43465136	25	2.0	25	87	8	71	36	4	6	53	1.46
43473448--43473495	24	2.0	24	84	4	62	37	12	2	47	1.53
43492709--43492744	3	12.0	3	93	0	63	63	2	0	33	1.08
43496482--43496539	26	2.2	27	81	9	66	58	3	5	32	1.37
43496466--43496559	19	4.9	19	69	18	61	57	4	3	35	1.34
43513476--43513528	27	2.0	27	85	7	72	32	0	1	66	1.03
43514395--43514688	145	2.0	145	97	0	552	28	14	14	42	1.85
43518164--43518206	16	2.8	16	86	6	63	11	13	0	74	1.07
43519155--43519378	40	5.8	39	71	15	128	23	18	29	28	1.98
43519232--43519375	39	3.7	37	79	8	137	22	18	31	27	1.97
43519627--43520441	98	8.3	98	86	1	1076	19	26	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43522484--43522524	8	5.2	8	83	16	50	0	19	0	80	0.71
43522476--43522509	16	2.1	16	88	0	50	2	26	0	70	1.01
43522484--43522526	5	8.4	5	82	14	52	0	18	0	81	0.69
43522484--43522526	12	3.5	13	84	12	56	0	18	0	81	0.69
43526628--43526683	20	2.8	19	84	10	67	50	14	10	25	1.75
43527562--43527604	16	2.8	16	86	6	63	11	13	0	74	1.07
43528617--43528657	18	2.3	18	87	8	57	43	0	0	56	0.99
43535362--43535407	21	2.2	21	96	0	83	23	13	41	21	1.88
43535362--43535414	21	2.5	21	90	0	70	22	15	41	20	1.89
43536255--43536284	15	1.9	16	93	6	53	46	16	13	23	1.82
43538693--43538726	6	5.7	6	100	0	68	50	35	0	14	1.44
43538730--43538754	10	2.5	10	100	0	50	40	0	16	44	1.47
43557274--43557325	22	2.3	23	80	12	54	55	1	7	34	1.39
43557947--43557983	19	1.9	19	88	0	56	40	5	5	48	1.49
43559665--43559707	21	2.2	19	84	12	52	27	2	0	69	1.00
43559903--43559981	22	3.4	22	77	13	61	56	3	2	36	1.31
43563346--43563498	63	2.5	59	78	10	157	46	15	17	20	1.84
43563340--43563501	58	2.7	59	78	7	157	45	16	17	21	1.86
43563875--43564343	243	1.9	246	82	2	586	36	15	15	32	1.90
43571792--43571827	18	2.0	18	88	0	54	30	13	19	36	1.91
43592498--43592624	32	4.0	32	81	10	143	32	20	16	30	1.95
43601240--43601281	21	2.0	21	86	13	61	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43601242--43601283	11	4.1	10	80	14	50	35	0	2	61	1.09
43601936--43601971	16	2.2	17	90	5	56	58	0	0	41	0.98
43607949--43608054	52	2.0	52	98	0	203	33	23	1	41	1.65
43611395--43611561	60	2.8	58	75	11	151	23	13	15	47	1.80
43628976--43629023	23	2.0	23	84	4	60	50	22	20	6	1.71
43632531--43632577	20	2.3	20	85	3	58	27	14	4	53	1.60
43641910--43641954	23	1.9	24	86	4	65	57	26	0	15	1.38
43650638--43650703	28	2.4	28	76	5	71	56	4	1	37	1.29
43653289--43653333	22	2.0	23	83	12	58	48	0	6	44	1.29
43665591--43665644	15	3.5	15	80	9	56	74	5	3	16	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135