genome.fa.s10.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  122  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40423688--40423721	15	2.3	15	94	0	59	17	0	8	73	1.08
40424513--40424558	20	2.1	22	88	11	69	43	0	4	52	1.21
40432201--40432239	14	2.7	15	80	8	53	56	10	7	25	1.59
40432362--40432389	11	2.5	11	100	0	56	50	25	10	14	1.75
40432679--40432711	13	2.6	13	85	4	50	57	12	0	30	1.35
40433615--40433656	17	2.5	17	81	14	52	9	14	0	76	1.02
40433784--40433809	13	2.0	13	100	0	52	30	0	23	46	1.53
40435137--40435175	14	2.7	15	80	8	53	56	10	7	25	1.59
40435555--40435600	25	1.9	25	86	8	69	54	4	4	36	1.40
40435666--40435693	13	2.2	13	100	0	56	50	14	0	35	1.43
40437818--40437872	5	11.2	5	98	1	103	40	0	0	60	0.97
40438033--40438078	25	1.9	23	86	8	65	54	4	4	36	1.40
40438144--40438171	13	2.2	13	100	0	56	50	14	0	35	1.43
40440299--40440333	5	7.2	5	96	3	63	40	0	0	60	0.97
40449750--40449793	18	2.5	17	76	20	54	15	6	6	70	1.31
40454686--40454719	12	2.8	12	86	0	50	73	0	2	23	0.97
40456589--40456638	21	2.3	22	83	10	68	56	20	14	10	1.66
40456604--40456644	21	2.0	21	85	0	55	56	19	14	9	1.66
40464060--40464187	58	2.2	58	86	8	172	48	1	1	48	1.20
40464358--40464429	16	4.5	16	89	0	108	26	27	5	40	1.78
40471552--40471612	31	2.0	31	87	6	88	36	18	16	29	1.92
40477249--40477313	2	32.5	2	100	0	130	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40479013--40479075	24	2.6	24	89	0	99	23	14	11	50	1.74
40480982--40481044	24	2.6	24	87	0	90	25	14	9	50	1.72
40483859--40483885	3	9.0	3	100	0	54	66	0	33	0	0.92
40491979--40492022	14	2.8	16	80	16	56	52	0	0	47	1.00
40493836--40493888	27	2.0	27	82	10	65	41	11	7	39	1.69
40494161--40494241	40	2.0	40	100	0	162	34	9	19	35	1.85
40498263--40498304	22	1.9	22	85	0	57	42	2	0	54	1.13
40501154--40501324	89	1.9	89	91	2	281	45	8	15	30	1.76
40504734--40504764	13	2.5	13	94	5	55	45	0	6	48	1.28
40513396--40513432	19	1.9	19	100	0	74	37	32	8	21	1.83
40516666--40516743	17	4.6	16	78	10	75	41	1	3	53	1.27
40516684--40516750	6	11.7	6	80	15	79	43	1	1	53	1.19
40516699--40516743	11	4.1	10	84	15	54	44	2	0	53	1.13
40516712--40516770	18	3.3	17	84	11	64	50	1	1	45	1.21
40518586--40518809	30	7.6	29	79	8	197	39	25	2	32	1.70
40518586--40518794	87	2.3	89	87	4	289	38	25	1	33	1.67
40518588--40518809	29	7.5	30	80	8	208	40	24	2	32	1.69
40525167--40525605	101	4.4	101	82	3	483	39	21	25	13	1.90
40525167--40525798	202	3.2	202	79	4	572	39	21	25	13	1.90
40525458--40525936	49	9.7	49	82	2	514	38	21	26	13	1.90
40526348--40527001	205	3.2	205	85	2	881	34	19	22	23	1.96
40527319--40527397	17	4.5	17	79	9	79	37	1	6	54	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40527337--40527409	6	12.5	6	71	16	55	39	1	4	54	1.28
40528473--40528515	22	2.0	21	82	17	52	60	2	16	20	1.46
40529235--40529343	29	3.7	29	82	2	128	37	25	2	33	1.71
40535272--40535314	12	3.4	12	80	6	50	67	2	0	30	1.03
40536650--40536709	31	1.9	32	86	10	88	41	8	8	41	1.65
40538288--40538331	23	1.9	23	81	9	54	43	4	0	52	1.22
40558260--40558284	2	12.5	2	100	0	50	52	0	0	48	1.00
40562325--40562404	40	2.0	40	85	2	106	37	16	27	18	1.92
40562389--40562716	41	8.0	41	85	0	406	30	20	32	17	1.95
40562389--40562802	123	3.5	123	82	6	446	29	20	32	18	1.96
40562723--40562827	41	2.5	41	87	1	138	27	20	29	21	1.98
40565744--40566012	43	6.3	43	83	0	272	27	16	26	29	1.97
40565771--40566012	85	2.8	85	86	1	315	27	17	26	29	1.97
40570957--40571289	102	3.3	101	84	1	432	24	25	24	25	2.00
40573541--40573565	8	3.1	8	100	0	50	60	0	40	0	0.97
40575368--40575433	30	2.2	28	86	7	87	22	3	0	74	0.96
40575733--40575790	27	2.1	27	78	15	66	50	22	0	27	1.50
40580452--40580481	2	15.0	2	100	0	60	50	0	50	0	1.00
40588362--40588386	9	2.8	9	100	0	50	32	0	0	68	0.90
40592011--40592100	43	2.1	42	93	4	162	30	6	6	56	1.51
40594351--40594533	91	2.0	91	98	0	357	32	25	21	20	1.98
40595467--40595504	20	1.9	19	89	5	58	21	7	0	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40601121--40601198	30	2.7	28	79	15	79	53	2	6	37	1.40
40608090--40608146	30	2.0	28	83	13	71	26	3	1	68	1.15
40608573--40608597	11	2.3	11	100	0	50	0	0	8	92	0.40
40612114--40612158	23	2.0	23	84	16	60	57	6	4	31	1.44
40613918--40613961	19	2.3	19	88	7	63	68	2	0	29	1.02
40614486--40614521	19	2.0	18	89	10	56	50	0	0	50	1.00
40614490--40614529	19	2.2	19	86	8	57	55	0	0	45	0.99
40614486--40614534	15	2.8	19	71	25	54	53	0	0	46	1.00
40614634--40614745	56	2.0	56	100	0	224	37	0	1	60	1.07
40617209--40617283	30	2.5	29	77	12	80	65	1	12	21	1.33
40617318--40617491	30	6.0	28	75	9	93	40	7	18	33	1.79
40617315--40617502	59	3.2	59	77	6	161	42	7	18	31	1.79
40617329--40617501	29	5.9	29	73	11	120	40	6	18	34	1.77
40617348--40617502	59	2.6	60	81	5	165	41	7	17	33	1.76
40622676--40622789	58	1.9	59	87	5	169	26	15	16	41	1.89
40634805--40634848	25	1.9	24	82	17	58	43	4	2	50	1.35
40650978--40651042	31	2.1	30	85	2	85	44	1	1	52	1.19
40653900--40654024	61	2.0	61	95	0	223	30	16	12	40	1.85
40657789--40657848	29	2.1	29	84	6	77	30	6	15	48	1.70
40657794--40657856	29	2.1	29	82	8	74	33	9	11	46	1.72
40658602--40658677	10	7.5	10	73	7	64	26	2	3	67	1.22
40659794--40659850	10	5.5	11	76	12	50	68	1	1	28	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40659788--40659861	29	2.5	30	82	10	91	66	1	4	28	1.18
40659796--40659850	20	2.7	22	71	23	57	69	1	1	27	1.09
40659902--40660002	20	5.0	19	71	18	71	50	3	4	40	1.42
40659949--40660004	10	5.5	10	77	10	60	57	1	3	37	1.27
40659908--40660024	61	1.9	62	83	10	152	54	4	5	35	1.42
40660041--40660156	10	11.4	11	71	16	74	40	2	0	56	1.19
40660041--40660156	11	11.4	10	69	14	51	40	2	0	56	1.19
40660051--40660201	20	7.7	19	77	11	135	39	3	0	56	1.23
40660051--40660143	30	3.1	29	79	14	109	37	3	1	58	1.22
40660041--40660209	60	2.8	60	82	11	179	40	3	0	55	1.22
40660130--40660259	58	2.2	57	80	10	140	36	6	0	55	1.32
40660130--40660258	18	6.7	18	68	23	68	37	6	0	55	1.33
40664899--40664931	16	2.0	17	88	5	50	63	0	0	36	0.95
40667671--40667856	51	3.6	52	85	6	184	31	22	15	30	1.95
40667726--40667859	51	2.6	51	94	2	225	29	22	15	32	1.95
40671335--40671485	30	5.1	28	79	10	108	37	23	4	34	1.75
40671348--40671450	30	3.5	29	90	2	143	40	21	3	33	1.71
40672990--40673018	11	2.6	11	100	0	58	72	0	0	27	0.85
40690400--40690441	20	2.1	20	86	8	59	76	2	4	16	1.07
40693452--40693783	163	2.0	163	94	0	574	24	18	9	47	1.78
40693821--40693845	13	1.9	13	100	0	50	88	0	12	0	0.53
40697656--40697736	37	2.2	37	86	2	110	27	16	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40710609--40710696	6	15.0	6	71	17	69	40	2	0	56	1.11
40710595--40710712	31	4.0	29	81	6	112	42	3	0	53	1.23
40710632--40710689	17	3.6	17	84	13	86	39	3	0	56	1.16
40710609--40710696	17	5.4	17	75	13	78	40	2	0	56	1.11
40710609--40710695	11	8.0	11	70	22	60	40	2	0	57	1.11
40711424--40711466	18	2.6	16	88	7	59	58	2	2	37	1.24
40711752--40711808	9	6.4	9	77	6	55	75	0	17	7	1.02
40711754--40711803	25	2.0	26	88	4	75	74	0	18	8	1.06
40711752--40711815	26	2.4	26	79	7	76	73	0	20	6	1.04
40712241--40712561	163	2.0	162	90	0	507	24	15	12	47	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135