genome.fa.s10.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  80  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26791528--26791567	20	2.0	20	100	0	80	50	10	10	30	1.69
26793563--26793609	21	2.2	21	84	0	58	27	12	23	36	1.91
26793601--26793654	21	2.6	21	93	0	99	29	12	27	29	1.94
26795872--26795920	21	2.3	21	100	0	98	26	12	26	34	1.92
26797608--26797653	22	2.0	25	87	12	71	23	8	0	67	1.18
26800429--26800535	20	5.2	20	73	5	72	32	6	12	48	1.66
26804910--26804947	19	2.1	19	85	5	51	44	18	0	36	1.50
26807061--26807107	24	2.0	23	83	4	58	27	4	6	61	1.39
26810606--26810645	15	2.6	16	88	4	55	30	5	10	55	1.54
26821648--26821690	18	2.6	16	81	7	50	74	2	20	2	1.04
26834189--26834236	21	2.3	20	80	13	53	41	12	10	35	1.77
26835008--26835062	25	2.2	26	96	3	103	63	3	7	25	1.37
26835456--26835485	2	15.5	2	93	6	53	50	0	0	50	1.00
26844418--26844476	27	2.2	27	81	0	73	42	33	10	13	1.78
26844732--26844800	34	2.0	34	100	0	138	26	20	14	39	1.91
26857568--26857603	13	3.0	13	88	11	51	72	8	11	8	1.29
26871890--26871940	24	2.1	25	88	3	77	43	35	0	21	1.53
26871924--26871964	22	2.0	21	85	9	57	31	24	2	41	1.68
26872066--26872124	20	3.0	20	92	5	93	15	16	25	42	1.88
26872066--26872134	27	2.6	27	88	4	95	14	17	24	43	1.86
26872066--26872130	7	9.6	7	78	9	64	15	16	26	41	1.88
26877025--26877064	21	1.9	21	89	0	62	62	0	32	5	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26885783--26885822	18	2.3	18	86	4	55	17	15	10	57	1.64
26896697--26896753	3	19.0	3	79	13	64	0	29	0	70	0.88
26896700--26896753	18	3.1	17	91	5	81	0	29	0	70	0.88
26908032--26908065	9	3.8	9	88	0	50	67	0	32	0	0.91
26908031--26908065	18	1.9	18	94	0	61	68	0	31	0	0.90
26909091--26909131	18	2.4	17	87	4	55	78	0	21	0	0.76
26911659--26911708	25	2.0	25	84	4	64	64	4	2	30	1.23
26911674--26911725	16	3.3	15	78	7	50	67	1	3	26	1.18
26912121--26912161	20	2.0	20	85	0	55	12	14	51	21	1.75
26931120--26931154	15	2.4	15	90	4	54	65	5	14	14	1.44
26941747--26941772	12	2.2	12	100	0	52	42	15	7	34	1.75
26960329--26960431	43	2.4	43	91	3	163	10	23	17	48	1.78
26963068--26963109	15	2.8	15	89	7	59	23	11	0	64	1.27
26964815--26964849	18	1.9	18	88	0	52	22	20	8	48	1.76
26968965--26968998	17	1.9	18	88	5	52	64	8	5	20	1.43
26977445--26977469	5	5.0	5	100	0	50	20	0	0	80	0.72
27004247--27004345	24	4.1	24	89	2	146	26	19	23	31	1.98
27004247--27004345	48	2.1	48	92	0	162	26	19	23	31	1.98
27010521--27010554	15	2.3	15	94	0	59	23	35	20	20	1.96
27020859--27020997	30	4.6	30	77	12	124	32	7	22	38	1.81
27020859--27020997	60	2.3	60	81	6	147	32	7	22	38	1.81
27025390--27025432	22	2.0	22	95	4	79	60	18	9	11	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27025602--27025642	21	1.9	22	85	5	57	26	24	29	19	1.98
27030911--27030954	23	2.0	23	90	4	72	59	13	11	15	1.62
27031117--27031269	76	2.0	76	96	2	281	24	17	22	34	1.96
27031428--27031567	15	9.3	15	66	12	54	26	18	26	28	1.98
27031434--27031570	30	4.6	30	74	1	105	27	18	25	28	1.98
27031434--27031570	60	2.3	60	84	2	168	27	18	25	28	1.98
27034950--27034975	7	3.7	7	100	0	52	30	0	42	26	1.56
27036948--27037012	10	6.4	10	75	16	53	56	0	1	41	1.08
27036943--27037001	31	1.9	31	89	6	93	55	0	0	44	0.99
27036942--27036993	15	3.4	15	73	23	54	57	0	0	42	0.98
27058470--27058642	95	1.8	95	100	0	346	24	6	35	33	1.81
27058722--27058777	21	2.7	21	100	0	112	28	8	25	37	1.86
27062024--27062079	27	2.1	27	86	6	78	7	28	8	55	1.57
27062960--27063009	25	2.0	25	88	4	73	64	2	2	32	1.16
27062971--27063007	9	4.3	9	80	13	51	67	0	2	29	1.04
27062972--27063010	16	2.4	16	87	8	53	66	0	2	30	1.05
27062969--27063022	25	2.2	25	80	9	67	68	1	3	25	1.16
27065383--27065435	21	2.5	21	87	0	79	32	9	24	33	1.87
27066075--27066169	12	7.9	12	81	0	100	68	18	5	7	1.33
27066081--27066169	36	2.5	36	96	0	160	68	19	5	6	1.33
27067693--27067855	80	2.1	78	90	3	263	28	15	20	36	1.93
27067810--27067968	80	2.0	78	90	2	246	27	15	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27068367--27068511	48	3.0	49	87	4	215	51	14	8	24	1.71
27068382--27068523	48	2.9	48	91	1	221	52	14	9	23	1.69
27078804--27079030	71	3.2	70	87	1	328	29	25	14	31	1.94
27087143--27087216	15	4.9	15	76	0	58	25	25	21	27	2.00
27087175--27087222	15	3.2	15	84	0	69	27	33	22	16	1.96
27088819--27088861	21	2.0	21	100	0	86	30	18	23	27	1.98
27091266--27091403	24	5.8	24	82	0	159	18	22	15	42	1.88
27091266--27091403	48	2.9	48	83	0	177	18	22	15	42	1.88
27091398--27095073	216	17.2	216	82	4	4018	41	13	17	27	1.87
27094669--27095019	193	1.8	192	84	1	479	43	13	16	26	1.85
27097476--27097623	80	1.9	80	95	0	269	30	14	20	34	1.92
27100192--27100235	23	1.9	23	95	0	79	36	9	13	40	1.76
27107970--27108009	17	2.3	18	91	4	64	72	5	15	7	1.24
27107969--27108011	18	2.3	18	84	4	59	74	4	13	6	1.19
27113217--27113255	21	1.9	21	89	5	62	7	28	10	53	1.62
27119189--27119239	25	2.0	25	100	0	102	41	11	7	39	1.71
27120935--27125671	216	22.1	214	82	4	5245	41	14	16	27	1.87
27120935--27125671	431	11.0	432	82	4	5353	41	14	16	27	1.87
27125957--27126003	25	1.9	24	87	12	69	19	10	12	57	1.64
27128576--27132749	216	19.4	216	84	2	4994	41	14	16	27	1.87
27134317--27134353	2	18.0	2	94	5	65	48	0	2	48	1.15
27143271--27173119	216	139.7	216	81	5	31618	41	13	17	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27173252--27173973	216	3.4	216	82	4	806	29	16	14	39	1.88
27174516--27174893	193	2.0	192	82	2	472	26	16	16	40	1.89
27174707--27175384	216	3.1	215	83	4	837	27	17	15	40	1.89
27175263--27175532	148	1.8	147	88	2	416	27	14	16	41	1.87
27175383--27176013	215	2.9	213	84	3	811	28	16	14	40	1.88
27176175--27176215	16	2.5	17	88	4	57	17	19	12	51	1.76
27176008--27176429	231	1.8	230	87	3	634	28	18	13	40	1.88
27176191--27177544	214	6.3	212	78	7	1314	28	17	13	40	1.88
27176191--27177555	429	3.2	424	81	6	1496	28	17	13	40	1.88
27178035--27178176	74	1.9	74	97	0	266	38	16	11	33	1.84
27182315--27182359	18	2.5	18	81	0	54	37	8	26	26	1.86
27182489--27182545	15	3.8	15	71	0	60	24	21	24	29	1.99
27188646--27188689	22	2.0	22	82	13	54	25	15	2	56	1.51
27200803--27200843	5	8.2	5	91	0	64	19	0	2	78	0.87
27202183--27202220	5	7.8	5	91	5	60	13	21	0	65	1.26
27202183--27202255	14	5.2	14	77	12	60	6	19	1	72	1.14
27202182--27202234	10	5.4	10	81	4	63	9	16	0	73	1.08
27202183--27202228	24	1.9	24	95	0	83	10	17	0	71	1.13
27202183--27202255	5	16.8	4	83	12	51	6	19	1	72	1.14
27209169--27209312	74	1.9	74	98	0	279	37	15	13	34	1.86
27211602--27211651	15	3.3	15	94	0	91	28	12	30	30	1.92
27212097--27214264	216	10.1	215	83	3	2617	40	13	17	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27211656--27214264	431	6.1	428	84	4	3121	40	13	17	28	1.87
27214615--27214659	20	2.2	21	88	4	65	57	2	31	8	1.41
27214642--27214689	15	3.3	14	74	8	51	41	0	39	18	1.51
27218424--27218503	15	5.3	15	68	5	54	27	26	21	25	1.99
27219604--27223158	216	16.6	216	83	3	4176	28	17	14	40	1.88
27219616--27223603	429	9.4	432	83	5	4466	28	17	14	40	1.88
27228184--27229254	216	4.9	214	84	5	1258	40	14	16	27	1.89
27229081--27229110	15	2.0	15	100	0	60	26	26	26	20	1.99
27231450--27231841	200	2.0	198	84	4	511	41	14	17	26	1.88
27231643--27236509	216	22.6	216	87	1	6385	40	14	17	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135