genome.fa.s10.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  49  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17466357--17466416	31	1.9	31	89	0	93	40	5	8	46	1.56
17469453--17469513	32	1.9	32	83	6	79	29	4	8	57	1.49
17471756--17471781	7	3.7	7	100	0	52	76	0	0	23	0.78
17471978--17472045	35	1.9	36	90	3	111	55	4	5	33	1.44
17472206--17472259	17	2.9	18	78	10	56	29	3	3	62	1.29
17472995--17473028	13	2.6	13	100	0	68	38	14	14	32	1.87
17498933--17498979	17	2.6	18	83	6	60	51	0	2	46	1.13
17504266--17504299	12	2.8	12	90	0	50	44	2	8	44	1.50
17507177--17507574	59	6.7	58	81	7	392	34	26	2	36	1.68
17507177--17507592	89	4.7	88	79	10	400	34	26	2	36	1.69
17507177--17507586	30	13.8	30	80	6	424	35	26	1	36	1.68
17511789--17511828	18	2.2	18	90	0	62	85	0	15	0	0.61
17511790--17511847	23	2.4	25	77	11	66	81	1	17	0	0.78
17511791--17511847	11	5.3	11	73	12	55	80	1	17	0	0.79
17511790--17511847	6	9.5	6	72	23	50	81	1	17	0	0.78
17512702--17512752	10	4.8	10	78	21	59	78	0	21	0	0.75
17512709--17512749	12	3.4	12	87	9	57	82	0	17	0	0.66
17513675--17514242	49	11.6	49	73	9	399	38	19	24	18	1.93
17513675--17514207	98	5.4	98	87	1	719	38	19	24	18	1.93
17516604--17517070	30	15.8	30	79	5	432	34	25	2	36	1.71
17516600--17517070	88	5.3	87	79	7	434	34	25	2	36	1.71
17518416--17518449	17	2.0	17	88	0	50	41	17	5	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17526992--17527031	21	2.0	21	90	5	64	22	2	7	67	1.28
17528144--17528201	22	2.7	22	86	7	84	22	6	15	55	1.64
17528166--17528229	32	2.0	32	96	0	119	23	9	14	53	1.69
17532232--17532307	21	3.5	21	68	10	62	19	53	2	23	1.57
17532283--17532383	48	2.1	48	83	0	121	23	49	3	22	1.67
17533169--17533244	21	3.4	21	70	22	64	39	18	5	36	1.73
17533345--17533419	26	3.1	26	71	25	90	42	17	2	37	1.63
17535333--17535395	31	2.1	29	85	5	81	44	1	14	39	1.55
17537435--17537551	39	3.0	40	79	7	107	37	8	17	35	1.81
17544088--17544124	18	2.1	18	94	0	65	45	13	16	24	1.83
17560155--17560287	70	1.9	67	84	4	176	33	12	11	42	1.79
17563803--17563838	6	6.0	6	100	0	72	16	0	50	33	1.46
17565928--17565969	2	21.0	2	100	0	84	50	0	0	50	1.00
17574905--17574989	35	2.4	34	76	23	88	42	18	10	28	1.84
17598392--17598444	13	4.0	13	75	4	61	16	18	22	41	1.90
17604087--17604147	31	2.1	28	84	9	77	62	4	8	24	1.43
17604275--17604591	30	10.7	30	82	6	342	33	1	26	39	1.64
17604246--17604412	90	1.9	90	84	5	230	37	1	23	37	1.63
17604269--17604603	119	2.8	116	83	5	395	32	1	26	39	1.66
17606876--17607113	48	5.4	48	67	19	174	25	20	15	38	1.92
17606921--17607067	38	3.6	38	67	16	105	25	20	17	37	1.93
17606797--17607115	86	3.7	86	90	0	476	26	20	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17618859--17619142	30	9.5	30	80	7	267	32	4	26	36	1.77
17618851--17619140	119	2.4	122	83	6	337	33	4	25	36	1.76
17620686--17620750	17	3.8	17	87	4	87	53	3	1	41	1.25
17624500--17624553	25	2.2	25	83	6	65	37	0	3	59	1.15
17625920--17626110	59	3.2	58	73	12	156	38	4	27	29	1.77
17626087--17626379	30	9.7	30	85	4	333	36	3	22	37	1.72
17627423--17627458	6	5.8	6	90	6	54	44	0	2	52	1.15
17628303--17628406	6	18.0	6	71	18	78	54	1	1	41	1.22
17628303--17628394	17	5.7	16	83	11	116	55	1	2	41	1.19
17628305--17628400	31	3.4	28	81	9	88	56	1	2	40	1.18
17632342--17632748	206	2.0	206	99	0	805	30	35	11	22	1.89
17633079--17633225	30	4.9	31	83	8	171	34	21	2	41	1.67
17634766--17634791	2	13.0	2	100	0	52	50	0	0	50	1.00
17635316--17635388	17	4.2	17	85	3	101	41	1	1	56	1.16
17635313--17635389	35	2.2	35	92	0	127	42	1	1	54	1.16
17635313--17635389	29	2.7	29	85	4	93	42	1	1	54	1.16
17635313--17635389	23	3.3	24	83	3	95	42	1	1	54	1.16
17635346--17635428	23	3.7	23	74	9	73	49	2	2	45	1.28
17635313--17635389	6	13.2	6	82	5	95	42	1	1	54	1.16
17637304--17637555	29	8.5	29	75	9	188	38	23	5	32	1.77
17637373--17637597	59	3.9	56	75	10	179	36	26	4	32	1.76
17637363--17637601	29	8.1	29	75	9	175	36	26	5	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17637574--17637715	59	2.4	58	75	8	144	29	24	6	39	1.80
17649006--17650415	205	6.9	205	91	0	2191	36	19	22	21	1.96
17650752--17650867	6	20.2	6	70	13	57	43	1	6	49	1.37
17650753--17650796	23	2.0	22	86	4	61	36	0	4	59	1.18
17652815--17653055	30	8.1	29	80	8	238	33	29	3	33	1.75
17652796--17653061	59	4.5	58	82	8	290	34	29	3	32	1.75
17655986--17656027	22	1.9	22	90	0	66	33	4	19	42	1.72
17659499--17659557	21	2.8	22	85	10	70	76	0	8	15	1.01
17660361--17660403	19	2.3	19	84	8	52	58	4	0	37	1.19
17664672--17664731	21	2.8	22	92	5	97	73	0	10	16	1.09
17665518--17665560	19	2.3	19	84	8	52	58	4	0	37	1.19
17666141--17666335	105	1.9	105	81	10	238	26	23	12	36	1.91
17667691--17667752	21	2.8	22	78	7	72	32	0	17	50	1.47
17667937--17667990	28	1.9	28	81	7	65	33	0	0	66	0.92
17684235--17684589	49	7.2	50	79	5	294	37	18	24	19	1.94
17684316--17684601	147	1.9	147	84	1	376	36	18	24	20	1.94
17684217--17684572	98	3.6	99	81	3	427	38	17	24	19	1.93
17689211--17689477	141	1.9	140	85	0	363	38	11	20	28	1.88
17689696--17689786	27	3.3	29	74	10	84	37	17	3	41	1.66
17689896--17689954	31	1.9	31	89	3	93	32	0	15	52	1.43
17702384--17702510	23	5.6	23	79	5	105	12	22	24	40	1.88
17702389--17702507	45	2.6	46	76	6	118	13	22	24	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17707067--17707111	22	2.0	24	86	8	67	33	8	26	31	1.87
17709493--17709546	23	2.3	23	90	0	81	9	24	22	44	1.81
17709535--17709607	22	3.3	21	82	5	74	13	21	28	35	1.92
17710659--17711100	74	6.0	74	91	0	695	37	15	21	25	1.93
17711756--17711797	19	2.2	19	83	8	50	50	2	4	42	1.36
17712994--17713047	25	2.3	22	80	17	72	61	9	0	29	1.27
17716963--17716993	3	10.3	3	92	0	53	61	3	35	0	1.12
17718361--17718403	23	1.9	23	90	4	70	58	6	2	32	1.38
17719638--17719734	40	2.4	41	77	3	106	36	20	15	27	1.93
17721763--17721789	7	3.9	7	100	0	54	88	0	11	0	0.50
17729331--17729404	22	3.6	21	70	23	68	63	6	4	25	1.37
17729329--17729413	40	2.1	40	97	0	161	60	8	3	28	1.42
17729347--17729414	18	3.2	23	66	23	67	60	7	2	29	1.39
17732566--17732604	14	2.8	14	92	0	60	38	17	0	43	1.50
17733260--17733301	22	1.9	22	95	0	75	30	9	0	59	1.29
17735344--17735370	3	9.0	3	100	0	54	0	0	33	66	0.92
17736693--17736726	15	2.2	16	89	5	52	32	0	0	67	0.91
17741388--17741432	17	2.6	18	82	7	56	48	0	4	46	1.22
17742578--17742763	92	2.0	92	87	4	268	39	15	14	31	1.87
17743994--17744034	17	2.4	17	87	0	64	36	9	19	34	1.85
17751534--17751564	16	1.9	16	93	0	53	54	3	0	41	1.16
17754177--17754208	3	10.7	3	100	0	64	0	0	31	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17754321--17754359	3	13.0	3	83	0	51	0	33	5	61	1.18
17754822--17754925	29	3.6	29	83	12	117	47	5	4	42	1.48
17769794--17769822	1	29.0	1	100	0	58	0	0	100	0	0.00
17772165--17772215	24	2.1	24	100	0	102	56	7	11	23	1.61
17777613--17777667	7	8.1	7	72	8	51	47	23	12	16	1.81
17777615--17777667	20	2.7	20	87	0	79	49	22	13	15	1.79
17778282--17778420	37	3.8	37	83	4	158	42	16	15	25	1.87
17788791--17788865	11	6.5	11	72	11	53	5	24	0	70	1.07
17788793--17788857	12	5.5	12	73	14	55	6	21	0	72	1.06
17788791--17788865	23	3.3	22	74	12	62	5	24	0	70	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135