genome.fa.s10.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  29  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11458356--11458380	5	5.0	5	100	0	50	20	0	60	20	1.37
11461545--11461569	2	12.5	2	100	0	50	0	52	0	48	1.00
11466643--11466680	4	9.5	4	100	0	76	23	50	0	26	1.50
11480035--11480066	11	2.8	12	86	13	50	84	9	0	6	0.78
11482548--11482603	21	2.7	21	84	13	80	32	0	1	66	1.03
11482768--11482797	2	15.0	2	100	0	60	50	0	0	50	1.00
11483068--11483101	4	8.5	4	100	0	68	23	0	52	23	1.47
11489059--11489092	17	2.0	17	94	0	59	41	2	0	55	1.15
11495471--11495496	5	5.2	5	100	0	52	61	19	0	19	1.35
11499309--11499346	18	2.1	18	85	9	51	52	13	7	26	1.67
11500731--11500782	24	2.2	24	85	0	68	55	7	3	32	1.46
11502608--11502646	19	2.1	19	100	0	78	30	5	23	41	1.76
11502675--11502726	24	2.2	24	89	0	77	57	7	1	32	1.38
11506654--11506846	87	2.2	89	83	7	232	39	12	6	40	1.70
11506974--11507136	10	17.3	10	69	17	75	65	1	4	29	1.20
11506983--11507088	27	3.9	29	75	14	93	66	0	4	27	1.17
11506949--11507158	9	22.7	9	68	15	83	64	1	4	29	1.23
11506974--11507138	46	3.5	46	77	14	119	64	1	4	30	1.20
11507502--11507732	92	2.6	90	81	9	233	35	8	14	41	1.75
11519112--11519142	3	10.3	3	100	0	62	32	0	0	67	0.91
11523750--11523775	3	8.7	3	100	0	52	34	0	30	34	1.58
11543099--11543148	16	3.1	16	80	5	64	28	6	4	62	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11543095--11543171	16	4.9	16	71	23	56	32	5	2	59	1.33
11546056--11546080	12	2.1	12	100	0	50	36	16	8	40	1.77
11547988--11548031	23	1.9	23	90	0	70	11	27	15	45	1.81
11553915--11553959	24	1.9	24	90	4	74	55	2	4	37	1.32
11555495--11555537	18	2.4	18	80	7	52	51	0	2	46	1.13
11559725--11559839	59	2.0	58	92	1	194	27	19	19	33	1.96
11561999--11562044	20	2.3	20	85	7	58	43	2	2	52	1.25
11562139--11562183	20	2.2	21	84	4	56	22	6	2	68	1.24
11562169--11562210	22	1.9	23	90	9	70	33	7	0	59	1.25
11565412--11565485	30	2.4	32	78	15	84	56	2	2	37	1.28
11565437--11565493	30	1.9	30	85	7	80	59	1	3	35	1.25
11565422--11565508	30	3.0	30	79	12	76	56	2	2	39	1.25
11566622--11566682	19	3.2	19	80	13	70	59	1	1	37	1.17
11566598--11566682	10	8.5	10	77	13	79	57	1	3	37	1.23
11566962--11567012	21	2.4	21	80	6	59	35	3	0	60	1.15
11590626--11590729	51	2.0	51	86	0	145	34	9	33	22	1.86
11595272--11595331	23	2.5	24	78	2	77	68	18	5	8	1.34
11595302--11595408	36	3.1	35	75	13	112	71	14	2	10	1.23
11595272--11595354	12	6.9	12	68	15	55	71	15	4	8	1.28
11595275--11595408	69	1.9	69	84	11	177	70	15	3	10	1.30
11606159--11606204	21	2.1	21	88	4	65	67	2	0	30	1.03
11607290--11607341	15	3.4	15	73	5	59	28	5	3	61	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11607291--11607340	16	3.2	16	71	23	52	26	6	4	64	1.35
11608797--11608850	28	1.9	28	88	7	83	40	9	16	33	1.80
11610159--11610211	14	3.7	14	73	14	54	20	0	11	67	1.21
11610239--11610294	27	2.1	27	86	0	76	23	30	30	16	1.96
11610247--11610309	27	2.3	27	88	0	90	22	33	28	15	1.95
11610465--11610506	15	2.8	15	88	0	57	26	0	4	69	1.08
11611914--11611957	22	2.0	22	95	0	79	68	6	6	18	1.35
11620830--11620918	45	2.0	45	97	0	169	33	12	13	40	1.82
11621727--11621764	17	2.3	17	86	4	51	60	7	13	18	1.56
11621859--11622000	29	4.9	29	71	13	103	33	1	30	33	1.67
11621859--11622188	30	11.1	29	78	10	278	36	1	27	34	1.65
11621859--11622180	59	5.4	60	81	9	292	37	1	26	34	1.65
11621954--11622188	30	7.9	30	86	4	298	38	0	24	35	1.62
11623249--11623300	22	2.4	22	82	17	65	46	0	0	53	1.00
11624003--11624049	18	2.6	19	80	6	53	40	4	6	48	1.48
11624042--11624100	11	5.1	11	76	8	55	55	1	0	42	1.09
11624042--11624100	6	10.0	6	75	10	59	55	1	0	42	1.09
11624008--11624134	36	3.5	35	78	8	121	53	5	1	39	1.34
11624042--11624134	17	5.2	17	76	15	82	56	5	0	37	1.22
11625457--11625511	26	2.1	26	89	0	83	50	1	0	47	1.11
11626114--11626156	20	2.2	20	87	4	61	65	0	2	32	1.06
11628609--11628657	12	4.1	11	78	17	53	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11650939--11651007	29	2.3	29	85	5	84	24	14	13	47	1.79
11651142--11651174	17	1.9	17	93	0	57	51	3	0	45	1.16
11652109--11652182	24	2.9	24	80	10	76	32	0	4	63	1.13
11654771--11654860	28	3.1	28	75	16	76	60	2	2	35	1.22
11657485--11657548	24	2.8	22	74	23	60	60	1	4	32	1.26
11658910--11658994	40	2.2	38	81	12	100	62	3	0	34	1.12
11680488--11680539	23	2.3	23	82	0	59	15	23	30	30	1.95
11684866--11684928	4	15.2	4	79	12	65	66	0	30	3	1.07
11684866--11684927	9	6.9	9	80	12	56	67	0	29	3	1.06
11684866--11684928	13	5.1	12	75	12	65	66	0	30	3	1.07
11684862--11684928	33	2.0	33	83	11	84	65	0	31	2	1.07
11684885--11684953	33	2.2	33	84	7	90	59	0	36	4	1.17
11686952--11687003	18	2.9	18	88	0	68	46	13	36	3	1.62
11686958--11687003	6	7.7	6	90	0	65	47	13	36	2	1.54
11692189--11692259	24	3.0	24	85	0	97	15	12	21	50	1.77
11692621--11692654	15	2.3	15	89	0	50	70	2	0	26	1.01
11692621--11692659	21	2.0	21	90	10	64	69	2	0	28	1.02
11702810--11702892	9	8.9	9	71	21	64	39	0	1	59	1.05
11705287--11705330	22	2.0	23	90	4	72	27	0	4	68	1.09
11705286--11705355	23	3.0	23	81	4	70	34	0	5	60	1.21
11705313--11705357	23	2.0	23	95	0	81	42	0	6	51	1.28
11709746--11709770	8	3.1	8	100	0	50	40	36	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11718791--11718829	14	2.8	14	88	0	51	20	0	7	71	1.10
11720612--11720636	5	5.0	5	100	0	50	60	0	0	40	0.97
11721378--11721423	23	2.0	23	83	8	58	50	2	4	43	1.34
11722343--11722437	28	3.6	27	71	21	76	53	1	0	45	1.07
11722436--11722477	18	2.3	18	91	0	66	35	0	0	64	0.94
11729819--11729851	11	3.1	11	86	4	50	75	0	0	24	0.80
11731147--11731190	23	1.9	23	81	9	54	34	4	0	61	1.16
11740494--11740537	21	2.2	19	84	8	52	61	4	2	31	1.28
11740957--11740998	16	2.6	17	82	17	54	38	2	0	59	1.10
11741034--11741083	23	2.2	24	78	10	59	42	2	2	54	1.23
11745954--11746142	95	2.0	95	97	0	360	49	12	18	19	1.79
11752236--11752283	10	4.9	10	76	2	53	62	2	2	33	1.18
11752236--11752512	9	30.0	9	63	18	56	59	3	4	31	1.35
11752434--11752485	19	2.7	19	88	8	70	55	1	5	36	1.35
11753308--11753348	20	2.0	20	85	9	55	58	21	12	7	1.58
11753297--11753725	220	2.0	221	88	1	648	37	22	15	24	1.93
11763896--11763962	29	2.2	30	78	5	73	55	2	4	37	1.36
11778534--11778585	26	2.0	26	100	0	104	38	30	11	19	1.87
11778740--11778780	11	3.8	11	87	3	57	53	0	0	46	1.00
11779271--11779320	14	3.1	16	72	27	52	56	4	2	38	1.30
11786887--11787061	52	3.4	52	81	4	174	24	15	25	34	1.94
11796650--11796701	18	3.0	18	86	10	65	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11810758--11810783	2	13.0	2	100	0	52	50	0	0	50	1.00
11814883--11814918	18	1.9	19	88	5	56	69	2	22	5	1.22
11815165--11815237	27	2.8	26	83	10	87	56	1	0	42	1.08
11815173--11815237	26	2.5	24	81	16	76	58	1	0	40	1.07
11815429--11815462	16	2.1	16	89	10	52	20	0	2	76	0.92
11815281--11815587	154	2.0	154	96	0	569	31	14	10	43	1.79
11819049--11819088	16	2.5	16	95	0	71	32	7	32	27	1.85
11822261--11822327	24	2.8	24	84	4	82	22	25	26	25	2.00
11837892--11838071	90	2.0	90	91	0	288	24	10	30	35	1.89
11842916--11842945	5	6.0	5	100	0	60	0	80	20	0	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135