genome.fa.s10.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  108  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36945378--36945426	25	2.0	25	91	0	80	36	26	18	18	1.94
36951562--36951619	28	2.1	27	87	3	80	12	6	20	60	1.54
36952381--36952431	27	1.9	27	84	4	68	39	15	5	39	1.72
36956874--36956918	22	2.0	22	91	4	72	44	0	0	55	0.99
36956876--36956916	21	1.9	22	90	5	66	43	0	0	56	0.99
36957589--36957665	29	2.6	29	79	4	82	45	15	15	23	1.84
36970318--36970360	18	2.4	18	88	7	61	53	0	0	46	1.00
36975291--36975330	18	2.2	18	95	0	71	20	12	20	47	1.81
36975436--36975496	24	2.5	23	74	10	68	22	11	16	49	1.78
36982747--36982852	43	2.5	43	83	4	135	35	12	22	29	1.91
36982878--36982974	40	2.4	40	87	0	140	41	10	24	23	1.86
36983635--36983713	21	3.8	21	75	6	79	32	12	22	31	1.92
36989915--36990060	41	3.5	41	85	2	175	36	10	23	29	1.88
36990087--36990179	40	2.3	40	88	3	134	39	9	24	25	1.86
36992512--36992540	12	2.4	12	100	0	58	51	10	31	6	1.62
36993509--36993559	22	2.4	22	93	3	86	35	13	25	25	1.93
36995462--36995526	34	1.9	34	87	0	94	13	21	26	38	1.91
37007414--37007549	36	4.2	30	84	14	123	22	28	16	32	1.95
37007443--37007541	36	2.8	36	96	0	180	24	27	16	32	1.96
37011199--37011223	13	1.9	13	100	0	50	72	4	8	16	1.24
37012994--37013031	12	3.1	13	81	14	53	57	0	0	42	0.98
37013603--37013924	62	5.2	62	85	5	356	28	19	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37013603--37013924	125	2.6	122	84	7	404	28	19	15	36	1.93
37014735--37014802	28	2.4	28	85	5	82	61	1	8	27	1.34
37014741--37014830	30	3.1	30	84	6	105	63	3	6	26	1.35
37015993--37016018	13	2.0	13	100	0	52	53	0	7	38	1.30
37016033--37016074	20	2.2	18	87	8	57	66	4	7	21	1.35
37016271--37017237	170	5.7	171	92	1	1511	46	4	5	43	1.49
37016271--37017267	84	11.7	84	93	1	1539	46	4	5	43	1.48
37017370--37017419	12	3.8	12	76	19	55	42	8	0	50	1.32
37017381--37017415	17	2.1	16	89	5	52	48	8	0	42	1.33
37017370--37017428	28	2.1	28	87	0	82	44	10	0	45	1.37
37019470--37019601	59	2.2	60	83	5	167	37	18	17	27	1.93
37019601--37019992	59	6.6	60	77	9	351	37	15	19	28	1.92
37019401--37019807	207	2.0	205	85	6	545	36	15	20	27	1.93
37019601--37019992	121	3.3	118	79	10	392	37	15	19	28	1.92
37037540--37037589	21	2.4	20	77	9	55	26	8	34	32	1.85
37042579--37042630	27	1.9	27	92	0	86	42	19	26	11	1.85
37042756--37042812	23	2.5	23	86	11	73	19	0	7	73	1.05
37046432--37047128	352	2.0	355	87	3	1006	40	16	9	32	1.81
37049802--37049926	30	4.2	29	81	10	121	38	5	20	36	1.76
37049802--37049926	60	2.1	59	89	4	189	38	5	20	36	1.76
37051774--37051984	40	5.4	39	75	12	173	27	17	25	30	1.97
37051774--37051986	76	2.7	78	86	4	286	26	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37051774--37051960	39	4.8	37	75	16	141	25	19	25	29	1.98
37060323--37060360	20	1.9	20	84	10	51	34	13	2	50	1.55
37065731--37065770	21	1.9	21	89	0	62	42	17	10	30	1.82
37079823--37079944	30	4.2	29	81	5	122	35	6	20	37	1.79
37079793--37079944	30	5.2	29	77	10	116	34	5	22	37	1.77
37081161--37081197	8	4.4	9	90	10	53	24	0	0	75	0.80
37081424--37081485	22	2.8	23	83	9	76	69	1	14	14	1.27
37082905--37083099	104	1.9	103	82	3	248	26	23	12	37	1.90
37082939--37083136	104	1.9	104	81	4	238	26	24	12	36	1.90
37083498--37083574	38	2.0	38	100	0	154	51	10	15	22	1.73
37088441--37088629	95	2.0	95	97	0	360	24	22	14	37	1.92
37094546--37094581	10	3.6	10	88	11	56	30	38	0	30	1.58
37099552--37099594	21	2.0	21	100	0	86	67	13	0	18	1.23
37108547--37108576	13	2.4	12	94	5	51	60	16	0	23	1.36
37109419--37109477	26	2.1	29	87	9	88	47	10	0	42	1.37
37109419--37109477	27	2.2	25	82	17	73	47	10	0	42	1.37
37109667--37109704	15	2.6	15	79	4	51	68	0	0	31	0.90
37111948--37111995	19	2.7	18	77	6	53	64	4	14	16	1.43
37113650--37113737	43	2.0	43	88	0	131	39	12	15	31	1.85
37117375--37117425	24	2.1	24	88	0	75	58	7	9	23	1.56
37119871--37119983	47	2.4	47	83	0	145	36	23	14	26	1.93
37122235--37122299	25	2.6	25	80	0	76	33	30	15	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37123628--37123667	19	2.0	20	85	4	55	42	0	40	17	1.49
37135288--37135351	23	2.8	23	77	15	78	39	20	3	37	1.68
37140513--37140537	7	3.6	7	100	0	50	88	12	0	0	0.53
37141650--37141742	27	3.3	27	72	16	89	24	9	9	55	1.62
37141650--37141800	58	2.6	58	84	5	169	25	11	10	52	1.69
37142033--37142091	31	1.9	31	85	0	82	49	10	15	25	1.76
37147105--37147141	17	2.1	18	90	5	58	37	5	0	56	1.22
37152734--37152783	21	2.5	20	80	6	66	34	14	28	24	1.93
37156135--37156194	21	2.9	21	82	0	75	35	23	13	28	1.92
37159459--37159724	109	2.4	109	87	3	365	25	22	22	29	1.99
37159459--37159786	109	3.0	106	82	6	325	25	21	21	31	1.98
37161594--37161823	86	2.7	86	87	1	318	31	26	18	23	1.97
37165264--37165310	23	2.0	23	91	0	76	36	17	12	34	1.87
37166875--37166920	3	15.3	3	100	0	92	32	0	0	67	0.91
37169336--37169420	42	2.0	42	97	0	161	45	10	11	31	1.75
37178142--37178223	41	2.0	41	100	0	164	29	24	9	36	1.87
37179452--37179501	10	4.9	10	88	11	75	38	4	0	58	1.17
37179452--37179501	21	2.4	21	96	3	93	38	4	0	58	1.17
37181218--37181254	18	2.1	18	89	0	56	56	2	8	32	1.43
37182393--37182521	52	2.5	52	82	6	163	44	9	11	34	1.73
37182691--37182737	15	2.9	17	76	23	64	34	12	4	48	1.61
37182871--37182901	16	2.0	15	93	6	53	29	12	0	58	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37183923--37183972	22	2.3	22	100	0	100	28	4	10	58	1.49
37187536--37187582	22	2.0	23	88	8	69	40	8	4	46	1.54
37187729--37187775	20	2.4	20	82	10	53	27	10	10	51	1.70
37191947--37192005	27	2.2	27	84	6	75	40	8	0	50	1.33
37193504--37193533	15	2.0	15	93	0	51	36	10	0	53	1.35
37195229--37195329	20	4.9	20	72	10	71	34	5	12	46	1.67
37200571--37200629	22	2.5	22	86	8	73	37	16	13	32	1.88
37204295--37204337	22	1.9	23	85	4	61	44	9	0	46	1.35
37205409--37205522	57	2.0	57	94	0	201	35	19	21	23	1.95
37221872--37221912	22	1.9	21	90	5	64	46	2	4	46	1.37
37225118--37225264	65	2.2	66	96	1	269	14	24	19	42	1.88
37229337--37229369	16	2.1	17	88	11	52	30	6	0	63	1.18
37230552--37230712	41	3.9	41	88	5	220	24	28	24	22	1.99
37235472--37235536	15	4.4	14	74	11	51	1	29	0	69	0.98
37235480--37235537	20	2.8	20	76	2	62	0	31	0	68	0.89
37247063--37247104	2	21.5	2	95	4	77	47	0	0	52	1.00
37249452--37249521	32	2.2	32	82	7	81	27	20	14	38	1.91
37249494--37249543	21	2.5	19	71	9	55	32	14	10	44	1.78
37250240--37250286	25	1.9	25	82	4	60	27	2	10	59	1.42
37250754--37250788	16	2.2	16	94	0	61	54	8	5	31	1.54
37250961--37251021	19	3.3	18	86	8	79	39	0	6	54	1.27
37251149--37251197	23	2.1	23	100	0	98	26	14	16	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37259243--37259302	19	3.2	19	78	4	59	65	0	1	33	1.03
37259266--37259316	26	1.9	27	84	11	70	66	0	0	33	0.92
37259604--37259646	18	2.5	16	82	14	50	25	6	6	60	1.48
37261022--37261053	16	2.1	15	94	5	55	34	0	0	65	0.93
37261946--37262044	30	3.3	30	84	7	103	35	5	23	36	1.77
37261959--37262054	30	3.2	30	86	5	115	37	5	19	37	1.75
37263227--37263262	8	4.2	8	89	10	54	25	0	0	75	0.81
37264057--37264203	39	3.8	39	75	8	138	25	17	25	31	1.97
37264052--37264303	79	3.2	79	84	3	276	27	17	23	31	1.97
37264096--37264308	39	5.4	40	72	8	159	26	16	24	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135