genome.fa.s10.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  41  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15233427--15233466	12	3.3	12	83	13	55	27	0	0	72	0.85
15233594--15233632	20	2.0	20	89	0	60	48	0	5	46	1.24
15234257--15234322	24	2.7	22	81	13	60	59	1	1	37	1.16
15234894--15234943	20	2.5	19	84	15	66	44	0	0	56	0.99
15235355--15235406	25	2.1	25	85	7	70	34	0	0	65	0.93
15236516--15236549	4	8.5	4	100	0	68	0	47	0	52	1.00
15245153--15245192	18	2.3	17	86	4	53	60	5	5	30	1.40
15245277--15245315	12	3.2	12	77	0	51	69	2	0	28	1.02
15247480--15247528	21	2.4	21	82	3	64	34	2	4	59	1.28
15249269--15249344	23	3.3	23	72	9	64	14	18	21	46	1.84
15249385--15249441	24	2.4	24	91	5	89	24	28	19	28	1.98
15249515--15249568	28	1.9	28	85	7	74	38	12	14	33	1.85
15253676--15253701	11	2.4	11	100	0	52	26	0	11	61	1.30
15258546--15258601	28	2.0	28	96	0	103	35	5	7	51	1.52
15262882--15262920	17	2.3	17	86	0	51	15	10	25	48	1.76
15266245--15266510	135	2.0	135	85	0	361	33	13	27	25	1.93
15266530--15266625	3	32.0	3	82	0	111	58	0	34	7	1.26
15270528--15270578	23	2.3	22	75	3	57	66	1	0	31	1.03
15285035--15285068	17	2.0	17	88	0	50	20	0	17	61	1.34
15286481--15286543	19	3.2	20	84	10	69	60	4	0	34	1.18
15286488--15286545	19	3.0	20	87	10	84	55	5	0	39	1.22
15287506--15287535	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15290358--15290458	34	3.0	34	88	1	141	37	14	8	38	1.78
15294963--15295130	88	1.9	86	81	2	201	31	13	15	39	1.85
15298404--15298442	14	2.7	15	84	8	53	28	7	15	48	1.72
15300561--15300643	26	3.2	26	84	1	123	20	15	33	30	1.94
15302756--15302798	18	2.4	18	80	7	52	37	11	13	37	1.82
15313364--15313391	2	14.0	2	100	0	56	50	0	0	50	1.00
15320693--15320717	13	1.9	13	100	0	50	32	16	8	44	1.76
15322186--15322230	18	2.4	18	88	3	63	33	2	2	62	1.20
15322922--15322991	23	3.0	23	78	2	86	40	20	11	28	1.87
15324255--15324298	9	4.8	10	81	13	51	81	0	9	9	0.87
15324255--15324335	36	2.3	35	81	12	85	76	1	12	9	1.08
15325059--15325093	17	2.1	17	88	0	52	28	0	0	71	0.86
15325899--15325938	2	20.0	2	100	0	80	50	0	0	50	1.00
15341150--15341182	11	3.2	11	83	16	52	39	0	9	51	1.34
15342818--15342857	19	2.0	19	85	9	53	35	15	10	40	1.80
15349322--15349550	51	4.5	51	80	7	250	29	24	14	31	1.94
15349394--15349538	48	3.0	48	89	3	209	29	24	13	31	1.94
15350788--15350826	17	2.3	16	83	12	51	66	0	0	33	0.92
15352991--15353071	18	4.5	18	73	17	69	17	1	58	23	1.46
15352982--15353053	39	1.9	36	86	8	99	19	2	54	23	1.57
15352982--15353038	18	2.9	21	79	15	75	19	3	54	22	1.59
15353027--15353106	33	2.4	34	83	10	103	20	0	55	25	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15355119--15355198	32	2.4	34	89	8	119	33	8	11	46	1.71
15356142--15356531	160	2.4	161	91	0	620	35	18	14	32	1.91
15359495--15359528	17	1.9	18	88	5	52	32	0	2	64	1.08
15364815--15364849	5	7.0	5	96	0	52	25	34	0	40	1.56
15367458--15367518	22	2.8	22	80	7	63	52	19	1	26	1.55
15369678--15369731	25	2.2	25	83	6	65	48	0	1	50	1.11
15369663--15369726	29	2.2	29	86	8	85	45	0	3	51	1.17
15383027--15383051	3	8.3	3	100	0	50	64	0	36	0	0.94
15383752--15383791	17	2.3	19	79	16	50	27	5	7	60	1.45
15384885--15384933	20	2.4	21	80	10	57	69	2	2	26	1.10
15392671--15392697	2	13.5	2	100	0	54	51	48	0	0	1.00
15394611--15394643	7	4.7	7	100	0	66	57	27	15	0	1.38
15396697--15396742	17	2.6	18	86	10	60	54	0	2	43	1.12
15412090--15412145	29	1.9	29	85	0	76	50	10	7	32	1.64
15421472--15421519	16	2.9	16	71	3	51	66	6	4	22	1.32
15421629--15421671	19	2.2	21	84	12	56	23	4	0	72	1.04
15424917--15424950	6	5.7	6	100	0	68	14	0	52	32	1.42
15425457--15425490	11	3.2	11	87	4	52	73	0	0	26	0.83
15443714--15444010	52	5.7	51	86	2	378	28	16	24	30	1.96
15446727--15446768	18	2.4	18	84	4	50	42	4	16	35	1.69
15452285--15452342	28	2.1	28	87	6	82	41	1	6	50	1.39
15452599--15452652	27	2.0	26	89	3	81	59	3	22	14	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15468847--15468871	13	1.9	13	100	0	50	32	4	8	56	1.47
15469353--15469407	29	1.9	28	85	10	76	65	5	1	27	1.25
15469613--15469643	7	4.3	7	95	4	53	25	0	3	70	1.02
15469605--15469643	14	2.8	13	85	11	51	25	0	2	71	0.98
15473017--15473047	15	2.1	15	93	0	53	48	16	12	22	1.80
15473057--15473194	43	3.2	43	82	1	177	29	27	18	23	1.98
15473057--15473235	43	4.1	42	80	5	137	29	26	17	26	1.97
15473309--15473341	15	2.2	15	94	0	57	48	27	0	24	1.51
15473586--15473625	21	1.9	21	94	0	71	2	50	15	32	1.57
15473588--15473637	21	2.4	21	86	6	66	4	52	12	32	1.57
15482735--15482799	31	2.1	31	91	2	103	49	7	6	36	1.57
15482875--15483051	32	5.7	31	78	11	152	49	2	1	46	1.24
15482921--15482995	8	9.1	8	72	16	64	56	0	0	44	0.99
15482868--15483070	32	6.5	31	67	16	114	50	2	1	45	1.24
15482920--15482995	18	4.6	18	71	19	67	55	0	0	44	0.99
15483408--15483450	21	2.0	21	91	8	70	41	9	39	9	1.69
15493298--15493490	41	4.7	41	80	0	242	22	24	29	24	1.99
15494277--15494353	17	4.4	18	69	8	61	44	1	5	49	1.33
15494290--15494367	34	2.3	33	82	8	86	50	1	3	44	1.28
15494325--15494367	17	2.6	16	82	10	50	55	0	0	44	0.99
15495623--15495830	59	3.5	59	83	0	272	34	28	2	34	1.70
15495666--15495759	29	3.2	29	67	14	75	37	26	3	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15507919--15508366	200	2.2	200	87	2	648	34	20	24	20	1.96
15508693--15508769	17	4.4	18	69	8	61	44	1	5	49	1.33
15508706--15508783	34	2.3	33	82	8	86	50	1	3	44	1.28
15508741--15508783	17	2.6	16	82	10	50	55	0	0	44	0.99
15510048--15510165	29	4.0	29	75	15	116	34	27	2	34	1.71
15510074--15510306	59	4.0	59	83	2	283	34	27	3	34	1.72
15510146--15510222	30	2.6	30	71	19	72	35	23	5	36	1.77
15510089--15510335	118	2.1	117	83	6	302	34	25	4	35	1.75
15511882--15511920	19	2.1	19	90	0	60	38	2	23	35	1.68
15511898--15512109	30	7.1	29	80	9	203	39	1	21	37	1.63
15511901--15512092	60	3.2	59	86	8	262	40	1	21	36	1.63
15511927--15512109	90	2.0	92	83	2	235	39	0	21	38	1.58
15524629--15524890	30	8.9	30	84	6	302	36	0	25	37	1.62
15527239--15527300	31	2.0	31	87	6	90	35	11	14	38	1.82
15529766--15529823	7	8.1	7	80	3	71	41	25	3	29	1.72
15529769--15529839	21	3.3	21	86	3	88	40	23	2	32	1.69
15529777--15529838	7	8.7	7	78	3	52	41	20	3	33	1.69
15529769--15529831	14	4.4	14	82	4	63	41	22	3	33	1.70
15530316--15530342	5	5.4	5	100	0	54	40	59	0	0	0.98
15531285--15531327	21	2.0	21	90	0	68	11	4	18	65	1.42
15531516--15531624	57	1.9	58	84	5	150	55	14	7	22	1.64
15533018--15533049	12	2.7	12	90	0	55	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15535852--15535889	20	1.9	20	88	0	58	15	7	0	76	1.01
15542819--15542876	24	2.5	23	73	18	57	39	5	1	53	1.33
15550514--15550600	34	2.5	35	86	5	131	26	8	24	41	1.82
15551152--15551236	11	7.5	11	69	17	57	43	3	0	52	1.18
15551152--15551276	17	7.3	17	75	8	101	41	3	3	52	1.33
15551183--15551231	24	2.0	24	92	0	80	46	4	0	48	1.20
15551251--15551289	17	2.2	17	86	4	51	46	5	5	43	1.48
15551716--15551772	29	2.0	29	93	3	98	40	21	10	28	1.86
15553270--15553520	58	4.3	57	80	7	222	36	23	3	35	1.74
15553293--15553463	88	2.0	87	86	5	238	37	23	2	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135