genome.fa.s10.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  21  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8938643--8938678	6	5.8	6	93	6	63	33	13	0	52	1.41
8943072--8943111	18	2.2	19	90	4	64	60	0	5	35	1.19
8943124--8943182	19	3.2	19	83	7	68	66	1	3	28	1.18
8943083--8943182	18	5.7	18	70	21	63	63	1	2	34	1.13
8943227--8943285	8	7.6	8	69	7	50	42	0	0	57	0.98
8943223--8943288	23	2.9	23	97	2	125	43	0	0	56	0.99
8943227--8943287	15	4.0	15	67	12	52	42	0	0	57	0.98
8943400--8943424	11	2.3	11	100	0	50	32	0	0	68	0.90
8943422--8943477	22	2.6	22	86	8	71	23	0	5	71	1.06
8949442--8949469	6	4.7	6	100	0	56	14	35	14	35	1.86
8953589--8953626	17	2.2	18	86	13	53	44	2	2	50	1.30
8954012--8954056	21	2.1	21	84	8	56	51	4	0	44	1.21
8954452--8954499	23	2.1	23	84	0	60	39	4	2	54	1.32
8954683--8954738	23	2.5	22	85	2	67	50	0	8	41	1.34
8957875--8957904	15	1.9	16	93	6	53	20	0	6	73	1.05
8964327--8964447	60	2.0	60	100	0	242	25	28	16	29	1.97
8974277--8974311	3	11.7	3	100	0	70	34	0	0	65	0.93
8975478--8975558	29	2.7	29	79	9	83	46	13	7	32	1.71
8994861--8994901	6	6.8	6	100	0	82	0	65	0	34	0.93
8996684--8996739	3	18.7	3	100	0	112	0	32	0	67	0.91
8999678--8999702	7	3.6	7	100	0	50	12	0	0	88	0.53
9000473--9000508	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9007021--9007075	29	1.9	29	85	3	76	25	3	3	67	1.23
9008300--9008329	2	15.0	2	100	0	60	50	0	0	50	1.00
9011056--9011142	33	2.7	31	75	13	95	26	9	11	52	1.67
9011277--9011319	19	2.3	19	84	8	52	67	0	0	32	0.91
9011830--9011873	20	2.2	21	84	8	56	43	2	0	54	1.12
9012160--9012212	7	7.1	8	78	18	53	28	0	0	71	0.86
9015499--9015719	23	9.4	23	85	5	257	9	23	22	44	1.82
9015499--9015717	94	2.3	93	83	4	255	10	23	22	44	1.83
9015499--9015729	71	3.3	69	80	7	250	10	22	22	44	1.83
9023176--9023226	25	2.1	24	89	10	77	43	3	1	50	1.31
9037016--9037075	29	2.1	29	93	0	102	35	11	10	43	1.75
9041088--9041126	20	2.0	20	84	0	51	43	23	0	33	1.54
9049206--9049320	39	3.0	39	96	2	207	44	10	26	18	1.82
9051423--9051453	8	3.9	8	95	0	53	29	6	25	38	1.81
9059880--9059952	37	2.0	37	94	0	128	42	13	17	26	1.87
9060442--9060532	41	2.3	39	83	11	112	39	1	5	53	1.31
9060685--9060715	12	2.5	12	94	5	53	41	0	0	58	0.98
9061101--9061148	12	4.0	12	86	0	69	22	16	18	41	1.90
9061103--9061149	24	2.0	24	95	0	85	19	17	19	44	1.87
9061243--9061329	23	3.8	23	90	3	122	26	11	22	39	1.88
9061265--9061306	12	3.6	12	75	18	52	23	14	23	38	1.92
9071538--9071579	22	1.9	22	95	0	75	11	23	26	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9073184--9073226	11	3.8	11	80	17	52	65	0	2	32	1.06
9073599--9073629	3	10.3	3	100	0	62	35	0	0	64	0.94
9073767--9073799	18	1.9	17	88	11	50	48	6	3	42	1.43
9075795--9075821	12	2.2	12	100	0	54	22	0	7	70	1.12
9090510--9090543	18	1.9	18	88	5	52	20	8	8	61	1.52
9098147--9098184	19	2.0	20	84	5	51	31	5	7	55	1.51
9100987--9101169	90	2.0	90	94	0	321	36	9	25	28	1.87
9108128--9108155	3	9.3	3	100	0	56	0	67	32	0	0.91
9111393--9111433	21	2.0	21	90	0	64	39	34	9	17	1.82
9111959--9111996	2	19.5	2	94	5	69	50	0	50	0	1.00
9116816--9116842	6	4.5	6	100	0	54	55	0	14	29	1.40
9117321--9117359	6	6.5	6	96	0	69	20	48	15	15	1.81
9121112--9121164	26	2.0	26	96	0	97	24	13	26	35	1.92
9124404--9124471	26	2.8	23	79	16	75	51	10	10	27	1.68
9124418--9124486	26	2.7	26	97	0	129	53	10	13	23	1.69
9126824--9126871	19	2.8	17	84	9	53	39	0	2	58	1.10
9140286--9140355	16	4.4	16	87	0	86	42	4	24	28	1.73
9140337--9140430	44	2.1	44	86	7	127	30	5	26	37	1.79
9140525--9140670	58	2.5	55	81	13	168	50	1	2	45	1.24
9144211--9144237	6	4.5	6	100	0	54	33	0	29	37	1.58
9152672--9152718	19	2.6	18	83	10	51	0	27	0	72	0.85
9155542--9155700	47	3.4	47	86	5	225	42	5	5	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9155604--9155683	23	3.4	23	74	16	83	42	5	2	50	1.37
9155627--9155700	24	3.1	24	70	18	73	43	5	2	48	1.40
9159384--9159531	59	2.5	59	81	4	156	37	8	23	31	1.84
9159443--9159533	29	3.1	29	68	14	87	38	6	21	32	1.80
9159514--9159767	29	8.8	29	73	12	166	35	1	25	36	1.68
9159453--9159764	59	5.3	58	79	9	269	36	2	24	35	1.71
9159487--9159767	57	4.8	58	79	9	243	36	2	24	36	1.71
9159490--9159767	87	3.2	87	76	9	264	36	2	24	36	1.69
9159558--9159767	29	7.3	28	77	12	185	35	2	24	38	1.68
9160715--9160824	17	6.4	17	84	7	141	53	1	0	43	1.17
9160715--9160824	35	3.2	34	83	12	136	53	1	0	43	1.17
9160715--9160824	52	2.1	52	86	3	150	53	1	0	43	1.17
9171014--9171048	18	1.9	18	88	0	52	42	2	5	48	1.41
9177153--9177180	14	2.0	14	100	0	56	28	0	0	71	0.86
9178110--9178147	2	19.0	2	100	0	76	50	0	0	50	1.00
9179086--9179153	31	2.2	31	82	10	77	44	11	4	39	1.61
9180260--9180326	33	2.0	33	100	0	134	29	20	8	40	1.83
9182592--9182662	8	8.5	8	72	18	56	19	0	7	73	1.06
9182592--9182658	27	2.6	27	79	11	77	20	0	7	71	1.10
9187004--9187085	40	2.0	40	100	0	164	25	19	24	30	1.98
9187582--9187640	15	4.0	14	81	16	66	40	0	0	59	0.97
9195671--9195771	47	2.1	47	96	0	184	33	7	14	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9199827--9199897	32	2.2	32	80	2	81	45	11	9	33	1.73
9209264--9209298	13	2.7	13	90	0	61	37	22	14	25	1.92
9247750--9248213	232	2.0	232	99	0	919	25	16	20	37	1.93
9249330--9249452	23	5.3	23	82	9	135	43	21	23	12	1.86
9256642--9256764	23	5.3	23	83	9	153	42	21	23	12	1.87
9259035--9259075	6	6.8	6	83	10	57	17	2	14	65	1.37
9262122--9262146	9	2.8	9	100	0	50	76	0	0	24	0.80
9263255--9263303	14	3.4	14	72	5	53	18	2	10	69	1.27
9265150--9265200	17	3.2	16	77	17	54	49	0	0	50	1.00
9268762--9268985	118	1.9	117	89	0	349	35	13	14	36	1.86
9269955--9269996	22	2.0	22	86	9	61	40	4	23	30	1.75
9271699--9271743	5	9.8	5	97	2	62	66	0	0	33	0.92
9271977--9272007	7	4.4	7	100	0	62	25	12	61	0	1.32
9274493--9274570	31	2.5	31	81	4	86	61	2	6	29	1.34
9279978--9280006	5	5.8	5	100	0	58	0	20	0	79	0.74
9282606--9282645	21	1.9	21	84	0	53	42	5	15	37	1.68
9289256--9289302	19	2.5	18	80	10	58	27	2	2	68	1.13
9289240--9289303	20	3.2	21	76	12	64	32	1	1	64	1.13
9295246--9295318	31	2.4	31	88	0	101	26	16	15	42	1.87
9297938--9297963	2	13.0	2	100	0	52	50	0	0	50	1.00
9299763--9299801	3	13.0	3	100	0	78	33	0	33	33	1.58
9310542--9310571	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9312070--9312103	4	8.5	4	93	0	50	20	0	23	55	1.43
9314578--9314616	20	2.0	20	84	0	51	10	25	23	41	1.86
9317334--9317374	17	2.3	18	87	4	57	63	0	0	36	0.95
9317521--9317572	20	2.5	21	72	12	54	26	0	3	69	1.06
9320928--9321011	31	2.8	29	85	7	96	35	5	14	44	1.69
9320954--9321011	29	1.9	30	89	6	91	36	6	13	43	1.71
9322599--9322625	3	9.0	3	100	0	54	0	33	0	66	0.92
9335003--9335084	29	2.8	31	75	12	84	58	2	2	36	1.24
9335022--9335079	28	2.1	27	81	9	64	58	3	1	36	1.25
9335311--9335358	23	2.1	23	92	0	78	58	6	0	35	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135