genome.fa.s10.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  118  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39423779--39423803	12	2.1	12	100	0	50	52	0	48	0	1.00
39427174--39427237	4	16.0	4	85	6	85	0	31	0	68	0.90
39427409--39427465	27	2.1	27	90	0	87	10	33	24	31	1.89
39429554--39429592	21	1.9	21	84	5	53	5	15	17	61	1.51
39433897--39433949	29	1.9	28	82	17	67	56	0	1	41	1.10
39436592--39436709	28	4.1	27	74	14	78	29	7	28	33	1.85
39436761--39436975	29	7.6	29	73	12	169	33	2	25	38	1.69
39436792--39436975	56	3.2	57	83	7	232	34	1	25	38	1.66
39436751--39436987	85	2.8	86	75	13	220	35	3	26	35	1.73
39436761--39437005	29	8.6	29	74	13	150	34	2	24	37	1.71
39438122--39438203	3	27.3	3	79	9	87	37	1	2	58	1.19
39438912--39438983	17	4.2	17	87	0	72	56	2	1	38	1.22
39439524--39439548	12	2.1	12	100	0	50	8	8	16	68	1.38
39449654--39449731	20	3.9	20	69	12	61	55	2	0	42	1.13
39449576--39449771	60	3.2	58	70	15	139	51	4	1	42	1.30
39458565--39458622	31	1.9	30	85	3	80	51	15	8	24	1.71
39459183--39459219	13	2.8	13	100	0	74	48	5	0	45	1.25
39459211--39459244	16	2.2	15	89	5	50	61	0	2	35	1.11
39466242--39466274	9	3.8	9	88	8	50	51	0	3	45	1.16
39471636--39471889	126	2.0	126	90	1	402	33	17	25	24	1.97
39481082--39481133	16	3.2	16	80	0	59	53	0	28	17	1.44
39491685--39491727	18	2.4	18	80	7	52	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39495444--39495479	14	2.6	14	90	0	54	41	11	0	47	1.39
39496540--39496579	21	1.9	21	89	0	62	50	7	12	30	1.68
39499054--39499145	31	3.0	30	79	6	96	41	8	11	38	1.73
39499049--39499154	31	3.5	30	80	5	90	40	9	13	36	1.77
39500582--39500655	36	2.1	36	100	0	148	35	35	5	24	1.78
39510041--39510065	4	6.2	4	100	0	50	52	0	0	48	1.00
39512481--39512530	12	3.9	13	79	10	50	62	10	24	4	1.44
39514688--39514753	32	2.1	32	91	0	105	31	16	6	45	1.72
39517073--39517120	23	2.1	23	88	7	71	22	18	10	47	1.79
39518579--39518773	59	3.3	58	83	8	250	35	3	28	33	1.73
39518580--39518682	30	3.5	29	69	22	88	33	3	29	33	1.76
39518613--39518772	29	5.5	30	73	20	126	36	2	28	33	1.71
39519083--39519392	59	5.2	59	86	6	448	35	2	28	33	1.72
39519083--39519391	30	10.4	29	71	20	189	35	2	28	33	1.72
39519313--39519405	30	3.1	29	70	22	77	32	3	31	33	1.74
39521223--39521298	6	12.8	6	72	18	61	53	1	5	39	1.32
39521212--39521298	17	5.4	16	77	12	88	51	1	5	41	1.33
39521239--39521265	14	1.9	14	100	0	54	51	0	11	37	1.37
39521224--39521282	31	1.9	31	92	0	100	54	1	5	38	1.33
39521230--39521298	11	5.8	12	75	14	54	55	0	5	39	1.24
39526123--39526252	42	3.2	41	81	5	156	25	25	23	25	2.00
39526058--39526252	82	2.4	81	78	6	189	26	25	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39527769--39527921	66	2.4	65	92	2	245	41	20	24	14	1.89
39527910--39527962	21	2.5	21	90	0	79	33	20	45	0	1.52
39530234--39530315	31	2.6	32	80	5	96	40	17	7	35	1.77
39531046--39531093	25	1.9	25	95	0	87	31	25	6	37	1.81
39540923--39540961	18	2.2	17	90	4	60	25	0	2	71	0.98
39544066--39544116	20	2.5	20	90	6	77	31	11	13	43	1.80
39546498--39546536	20	1.9	21	84	5	53	20	2	0	76	0.90
39547471--39547508	18	2.1	19	85	5	51	39	10	7	42	1.69
39549745--39549793	20	2.5	20	86	3	64	20	18	0	61	1.35
39551531--39552115	29	20.6	28	63	23	126	33	3	31	32	1.73
39551531--39552115	58	10.3	58	84	7	722	33	3	31	32	1.73
39551589--39551687	49	2.0	48	86	1	135	33	3	30	33	1.73
39553870--39553939	6	12.0	6	74	17	67	54	0	2	42	1.15
39553882--39553939	17	3.7	15	84	13	64	56	0	3	39	1.16
39565265--39565325	31	2.0	31	93	0	104	40	13	18	27	1.87
39576744--39576776	12	2.8	12	95	0	57	12	18	21	48	1.80
39576875--39576953	23	3.4	23	79	8	72	32	12	16	37	1.86
39576920--39576965	23	2.0	23	83	8	58	39	10	17	32	1.84
39583111--39583667	238	2.3	238	99	0	1105	34	15	12	37	1.85
39584096--39584131	12	3.0	12	87	0	54	16	16	16	50	1.79
39584233--39584274	12	3.6	12	77	6	50	23	14	21	40	1.90
39584210--39584279	23	3.0	23	82	2	86	28	11	18	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39584216--39584302	23	3.7	23	81	4	77	34	10	16	39	1.82
39588301--39588403	28	3.7	27	75	6	80	30	16	25	28	1.97
39589800--39589841	19	2.2	20	86	4	59	61	28	0	9	1.27
39589800--39589843	20	2.2	20	84	8	54	61	29	0	9	1.27
39599455--39599689	122	1.9	123	92	0	391	29	9	14	45	1.76
39609354--39609392	20	1.9	21	84	5	53	61	5	7	25	1.44
39618677--39618766	38	2.3	39	83	9	103	38	2	4	54	1.33
39619337--39619829	69	7.1	69	85	0	583	34	25	20	19	1.96
39626554--39626927	41	9.1	41	84	1	446	37	10	25	26	1.89
39626554--39626899	123	2.8	123	90	0	539	37	11	24	26	1.89
39629162--39629198	19	1.9	19	89	10	58	54	0	0	45	1.00
39629166--39629211	23	2.0	22	87	4	65	50	0	0	50	1.00
39629154--39629211	22	2.8	21	77	22	68	48	0	0	51	1.00
39629954--39630016	29	2.2	29	86	8	85	34	7	4	52	1.52
39634101--39634129	15	1.9	15	100	0	58	55	0	3	41	1.17
39638764--39638806	19	2.1	21	83	8	54	55	2	0	41	1.12
39639800--39639833	2	17.0	2	100	0	68	50	0	0	50	1.00
39640073--39640186	60	1.9	60	82	7	142	26	12	16	44	1.83
39644296--39644349	24	2.2	24	90	0	81	24	14	11	50	1.75
39653027--39653065	6	6.5	6	87	0	51	23	30	0	46	1.53
39657336--39657395	28	2.1	28	82	11	70	45	5	11	38	1.63
39662668--39662745	29	2.6	28	78	9	84	32	14	3	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39669777--39669929	42	3.6	42	88	2	189	37	9	27	24	1.87
39671391--39671439	25	2.0	24	88	11	73	65	0	4	30	1.11
39672323--39672364	21	2.1	21	86	8	61	54	2	0	42	1.13
39673346--39673400	21	2.6	21	82	0	65	18	10	40	30	1.85
39678718--39678766	25	2.0	25	87	0	71	14	20	4	61	1.49
39679092--39679292	63	3.0	69	86	10	306	28	18	25	26	1.98
39681696--39681934	80	3.0	80	80	6	304	40	18	13	28	1.88
39685328--39685366	21	1.9	21	89	5	62	30	0	23	46	1.53
39686535--39686565	2	15.5	2	100	0	62	51	0	0	48	1.00
39710465--39710502	6	6.5	6	88	11	53	55	0	0	44	0.99
39710723--39710789	31	2.2	31	83	0	80	34	8	8	47	1.66
39712312--39712612	3	100.3	3	67	10	78	10	4	59	24	1.49
39712366--39712529	42	3.8	42	72	10	127	11	4	59	25	1.50
39712375--39713069	75	9.3	74	74	12	361	12	4	58	25	1.52
39712591--39712624	15	2.3	15	89	0	50	5	2	64	26	1.30
39712603--39712660	24	2.4	24	80	5	64	12	3	60	24	1.47
39712512--39712747	84	2.8	83	80	6	210	11	5	58	25	1.52
39712478--39712714	72	3.4	71	75	13	222	11	5	58	24	1.54
39712687--39712841	24	6.6	23	68	12	75	14	4	58	22	1.54
39712771--39712900	6	21.7	6	70	12	52	13	1	60	25	1.42
39712688--39712975	108	2.6	106	86	6	326	13	3	57	24	1.53
39712772--39712858	45	1.9	45	83	4	113	16	2	57	24	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39712684--39713236	63	9.2	61	69	12	256	13	3	57	25	1.52
39712804--39712861	24	2.4	24	79	0	62	17	3	55	24	1.57
39712855--39712919	30	2.2	30	86	5	87	9	0	63	27	1.25
39712831--39712933	33	3.2	31	74	13	93	11	1	59	27	1.43
39712918--39713161	24	10.2	24	68	10	113	13	4	56	24	1.57
39712771--39712992	108	2.1	106	93	2	374	13	2	58	26	1.46
39713152--39713308	3	52.3	3	66	12	72	9	2	59	28	1.42
39713146--39713326	18	10.2	18	71	10	104	9	3	58	28	1.46
39713133--39713240	12	8.7	13	70	13	50	10	1	58	29	1.42
39713155--39713227	27	2.7	27	86	0	101	9	1	60	28	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135