genome.fa.s10.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  4  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358243--1358284	22	2.0	20	86	9	57	30	0	0	69	0.89
1359624--1359681	13	4.5	13	78	6	55	41	1	1	55	1.20
1359816--1359857	21	2.0	21	81	9	50	69	4	2	23	1.20
1361952--1362029	21	3.8	21	75	8	72	35	1	1	61	1.12
1362898--1362923	12	2.2	12	100	0	52	7	0	57	34	1.27
1364751--1364798	23	2.1	22	85	11	62	47	0	0	52	1.00
1368825--1368912	30	2.9	30	79	14	101	37	5	5	51	1.50
1377770--1377802	12	2.8	12	90	4	50	60	0	0	39	0.97
1389552--1390137	129	4.5	129	94	2	1016	40	7	4	47	1.53
1401168--1401317	74	2.0	74	100	0	300	40	16	12	31	1.84
1402758--1402984	123	1.8	123	84	3	314	44	17	11	27	1.82
1425239--1425272	4	8.5	4	100	0	68	23	0	26	50	1.50
1444763--1445228	156	3.0	153	86	3	644	28	21	23	27	1.99
1455007--1455041	18	1.9	18	88	0	52	37	17	40	5	1.73
1457887--1457924	19	2.0	19	89	0	58	34	0	2	63	1.09
1459501--1459619	12	9.9	12	90	0	148	0	37	0	62	0.96
1459500--1459619	36	3.3	36	86	0	168	0	37	0	62	0.95
1464784--1464838	24	2.2	24	81	15	60	56	7	0	36	1.27
1465726--1465775	19	2.7	19	70	14	50	48	2	0	50	1.12
1468768--1468794	13	2.1	13	100	0	54	85	0	0	14	0.61
1472387--1472413	6	4.5	6	100	0	54	85	0	0	14	0.61
1490888--1490926	2	20.0	2	94	5	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1491104--1491140	14	2.7	15	88	12	53	48	0	0	51	1.00
1494777--1494914	60	2.3	60	75	9	140	35	15	7	41	1.75
1495149--1495176	5	5.6	5	100	0	56	21	0	17	60	1.36
1499476--1499580	55	1.9	55	84	0	138	27	12	10	49	1.73
1499476--1499585	28	4.0	28	72	5	91	26	11	10	51	1.69
1506418--1506456	3	13.0	3	100	0	78	66	0	0	33	0.92
1508436--1508494	31	2.0	29	83	12	75	59	0	5	35	1.20
1510777--1510814	16	2.5	15	84	16	51	65	2	0	31	1.06
1511374--1511409	12	2.8	13	87	8	56	66	0	0	33	0.92
1521735--1521771	6	6.2	6	100	0	74	16	16	51	16	1.77
1524754--1524798	18	2.5	18	88	0	72	57	4	13	24	1.54
1526917--1527060	23	6.3	23	91	3	218	11	23	24	40	1.87
1531374--1531455	42	2.0	42	90	0	128	25	24	14	35	1.94
1531915--1531949	15	2.3	16	85	14	56	48	0	0	51	1.00
1567288--1567325	15	2.6	15	83	4	51	47	7	0	44	1.32
1567413--1567451	20	2.0	19	85	5	51	41	2	0	56	1.13
1567671--1567702	2	16.0	2	100	0	64	50	0	0	50	1.00
1575416--1575476	31	2.0	31	86	0	86	37	3	11	47	1.56
1576245--1576297	24	2.2	24	86	0	70	50	1	0	47	1.12
1576644--1576675	16	1.9	16	93	6	55	12	18	6	62	1.50
1582816--1582873	30	1.9	31	86	10	84	37	3	1	56	1.26
1591068--1591101	15	2.2	16	89	5	52	26	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592875--1592920	17	2.7	17	83	6	58	13	13	0	73	1.09
1596311--1596386	32	2.3	32	77	6	82	40	3	7	47	1.51
1605569--1605641	34	2.1	34	82	5	85	42	0	4	53	1.20
1605569--1605641	17	4.3	17	81	8	69	42	0	4	53	1.20
1606002--1606071	26	2.8	25	76	19	83	37	21	10	31	1.86
1606456--1606508	26	1.9	29	81	11	67	52	1	0	45	1.11
1606474--1606508	17	2.0	17	94	5	61	54	0	0	45	0.99
1607591--1607762	30	5.8	29	76	7	157	37	20	4	37	1.73
1607602--1607846	29	8.3	29	73	13	171	34	23	4	37	1.75
1607601--1607783	59	3.1	56	82	7	204	35	20	4	39	1.72
1607652--1607846	59	3.3	60	78	5	168	34	23	4	36	1.76
1607829--1607923	30	3.2	30	65	14	79	34	21	4	40	1.72
1607828--1607920	28	3.2	29	62	8	71	34	22	4	38	1.74
1607826--1607951	59	2.2	58	82	7	157	32	23	5	38	1.78
1611159--1611209	24	2.0	26	81	7	61	33	11	9	45	1.74
1612647--1612679	15	2.1	16	88	5	50	15	12	15	57	1.65
1614104--1614133	16	1.9	15	93	6	51	0	10	43	46	1.37
1619173--1619215	18	2.5	17	81	7	59	16	0	2	81	0.79
1627610--1627665	27	2.3	25	78	21	66	46	1	1	50	1.22
1627639--1627681	16	2.9	14	74	12	50	51	0	0	48	1.00
1630741--1630781	2	20.5	2	100	0	82	51	0	0	48	1.00
1647450--1647484	18	1.9	18	94	0	61	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1653117--1653270	79	1.9	79	94	0	272	32	31	11	24	1.90
1660179--1660210	16	2.0	16	93	0	55	53	0	0	46	1.00
1661107--1661150	15	3.0	14	80	9	52	56	9	34	0	1.31
1683571--1683605	18	1.9	18	94	0	61	31	8	22	37	1.85
1692296--1692342	25	1.9	24	86	4	67	23	19	17	40	1.91
1692645--1692685	18	2.4	18	88	8	59	34	9	4	51	1.56
1701977--1702041	30	2.1	32	85	5	89	52	6	1	40	1.36
1702358--1702434	29	2.6	29	76	10	75	61	2	1	35	1.18
1702369--1702413	23	2.0	23	86	0	63	64	2	2	31	1.18
1702645--1702721	29	2.7	29	85	2	102	44	1	5	49	1.33
1711560--1711593	17	2.0	17	88	11	52	20	0	26	52	1.46
1712103--1712149	18	2.6	18	80	6	51	59	0	0	40	0.97
1712599--1712635	15	2.6	15	87	8	51	64	0	0	35	0.94
1713560--1713588	15	1.9	15	100	0	58	34	3	0	62	1.12
1715845--1715889	23	1.9	24	81	4	56	35	0	2	62	1.08
1718771--1718922	30	5.1	30	95	0	259	42	23	18	15	1.89
1728716--1728753	19	2.0	19	89	0	58	28	2	23	44	1.67
1734903--1734937	18	1.9	18	94	0	61	25	0	14	60	1.35
1737858--1737896	18	2.2	18	86	9	53	20	23	0	56	1.42
1738932--1738966	18	1.9	18	88	0	52	45	0	0	54	0.99
1738913--1738971	21	2.8	20	79	10	64	49	0	0	50	1.00
1740584--1740621	18	2.1	19	90	5	60	71	18	0	10	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1742703--1742876	94	1.8	95	91	3	289	33	14	14	37	1.86
1756687--1756721	18	1.9	18	88	0	52	2	8	11	77	1.10
1766871--1766992	60	2.0	61	82	3	149	26	18	15	39	1.91
1766964--1767024	32	1.9	32	96	3	115	39	6	3	50	1.45
1766914--1767085	91	1.9	93	83	2	231	32	14	11	41	1.81
1767007--1767224	61	3.6	58	79	9	206	27	16	16	38	1.91
1767007--1767224	121	1.8	121	82	6	280	27	16	16	38	1.91
1766995--1767233	60	3.9	59	80	10	250	27	17	16	38	1.91
1767961--1768010	26	2.0	26	88	4	75	66	0	0	34	0.92
1771088--1771562	85	5.6	85	90	3	706	43	6	4	46	1.47
1771651--1771706	22	2.5	22	76	0	67	35	41	5	17	1.73
1771710--1771775	30	2.2	30	83	5	80	18	27	22	31	1.97
1772755--1772808	28	2.0	28	85	7	76	24	3	5	66	1.29
1774001--1774067	31	2.2	30	89	2	98	28	4	4	62	1.34
1774881--1775151	61	4.5	58	81	9	257	41	15	16	25	1.89
1774865--1775153	60	4.8	61	79	8	295	42	16	16	24	1.88
1774872--1775153	121	2.3	118	84	6	343	42	16	16	24	1.88
1775059--1775228	87	1.9	88	84	5	229	40	12	15	32	1.84
1775122--1775176	27	2.1	26	86	10	76	49	3	5	41	1.43
1797725--1797805	40	2.0	40	100	0	162	23	17	9	49	1.76
1809666--1809694	14	2.0	15	93	6	51	75	3	0	20	0.94
1815506--1815532	14	1.9	14	100	0	54	48	14	7	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816144--1816189	15	2.9	16	83	6	58	73	4	15	6	1.19
1821295--1821338	23	1.9	24	86	9	65	40	4	9	45	1.56
1821398--1821422	2	12.5	2	100	0	50	52	0	0	48	1.00
1822771--1823003	119	2.0	119	95	0	421	30	9	16	43	1.79
1823655--1823679	11	2.3	11	100	0	50	36	8	8	48	1.62
1831486--1831518	17	1.9	17	93	0	57	51	0	0	48	1.00
1831546--1831592	15	3.1	15	84	0	58	29	14	0	55	1.40
1831828--1831864	14	2.4	16	86	13	51	51	0	0	48	1.00
1834237--1834330	46	2.0	46	91	0	152	30	23	18	27	1.97
1840417--1840445	3	10.0	3	92	7	51	68	0	31	0	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135