genome.fa.s10.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  54  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18970572--18970651	31	2.6	31	74	7	81	38	7	8	45	1.64
18974431--18974472	22	1.9	22	90	0	66	40	11	7	40	1.69
18976642--18976673	14	2.3	14	100	0	64	28	40	18	12	1.87
18981205--18981265	3	20.3	3	89	0	95	68	0	1	29	0.99
18981264--18981289	3	8.7	3	100	0	52	69	30	0	0	0.89
18986350--18986442	44	2.1	43	86	5	125	55	15	19	9	1.66
18993751--18993789	8	4.9	8	100	0	78	35	0	0	64	0.94
18993754--18993820	24	2.9	24	77	20	63	37	0	1	61	1.05
18993752--18993824	8	9.4	8	81	12	50	35	0	1	63	1.04
18993929--18994143	110	2.0	110	82	0	268	31	9	15	42	1.80
18996263--18996299	11	3.4	11	92	0	56	5	8	5	81	0.99
18996787--18996834	15	3.3	14	80	8	51	45	31	10	12	1.76
18996867--18996915	20	2.5	20	93	0	80	16	22	24	36	1.94
18996867--18996921	7	8.1	7	78	8	60	16	21	25	36	1.94
18997992--18998023	3	10.7	3	93	0	55	31	0	3	65	1.08
19000388--19000456	7	10.6	7	80	13	85	85	0	14	0	0.60
19001543--19001947	42	9.9	42	79	5	429	30	26	18	24	1.98
19001543--19001947	81	5.0	81	85	0	504	30	26	18	24	1.98
19001966--19002391	39	10.5	42	77	9	379	31	29	14	24	1.95
19001846--19002045	100	2.0	100	90	0	310	32	24	19	24	1.98
19001973--19002391	81	5.2	81	85	4	517	31	29	15	24	1.95
19002374--19002782	45	9.1	45	84	2	482	32	26	15	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19005172--19005382	110	1.9	110	91	0	341	30	12	16	40	1.85
19017961--19018315	52	6.6	52	85	7	458	27	12	23	36	1.91
19018045--19018263	115	1.9	114	90	0	348	27	12	24	35	1.91
19017993--19018377	167	2.3	167	94	0	666	28	12	23	35	1.91
19019049--19019102	21	2.6	21	82	5	65	31	14	27	25	1.95
19020161--19020405	37	6.7	36	81	4	267	17	19	29	33	1.95
19020161--19020405	74	3.3	74	85	1	314	17	19	29	33	1.95
19028528--19028806	153	1.8	153	90	0	450	34	15	18	32	1.92
19029317--19029419	50	2.1	49	87	8	147	35	1	27	34	1.68
19029376--19029806	59	7.3	59	82	7	457	34	2	29	32	1.72
19029553--19029776	30	7.5	31	64	23	108	34	2	29	33	1.70
19029367--19029803	118	3.7	118	82	5	515	34	2	29	32	1.72
19031721--19031771	17	3.1	17	82	2	59	52	1	1	43	1.23
19031706--19031778	27	2.7	27	80	0	74	47	2	2	46	1.31
19031736--19031787	17	3.1	17	83	10	54	57	5	0	36	1.23
19031734--19031793	16	3.7	16	82	6	68	55	5	0	40	1.22
19032157--19032667	45	11.2	45	83	4	538	37	17	7	36	1.79
19032312--19032382	22	3.2	22	62	18	56	33	22	11	32	1.90
19032312--19032386	26	3.2	26	62	31	67	34	22	10	32	1.89
19032447--19032517	22	3.2	22	64	18	56	30	22	11	35	1.89
19033179--19033496	152	2.1	152	92	1	523	20	22	22	35	1.96
19033319--19033796	200	2.4	200	93	0	812	19	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19045508--19045560	17	3.1	17	78	10	54	62	11	9	16	1.54
19052540--19052734	104	1.9	102	81	6	232	37	12	24	25	1.91
19053296--19053340	19	2.4	19	81	7	56	37	0	4	57	1.19
19054139--19054196	22	2.5	23	81	13	66	18	10	0	70	1.15
19054152--19054198	21	2.2	22	88	3	69	19	8	0	72	1.10
19055935--19056038	29	3.6	30	79	7	108	31	8	18	41	1.81
19056022--19056085	29	2.2	30	82	2	76	23	7	23	45	1.79
19056413--19056441	9	3.2	9	100	0	58	31	10	0	58	1.31
19060910--19061004	17	5.5	17	76	1	91	34	2	8	54	1.42
19061229--19061298	32	2.2	32	94	0	122	27	45	10	17	1.80
19067599--19067657	5	11.2	5	85	10	66	77	1	20	0	0.85
19067598--19067705	6	17.7	6	71	17	53	76	3	18	0	0.98
19068705--19069767	49	21.5	49	68	12	552	38	18	24	18	1.93
19068653--19069803	98	11.6	97	86	2	1269	38	18	24	18	1.92
19070090--19070282	78	2.5	77	84	1	233	23	29	21	26	1.99
19070156--19070281	39	3.2	38	72	12	112	22	30	19	28	1.98
19070824--19070918	17	5.5	17	76	6	75	35	3	7	53	1.45
19070828--19070913	34	2.5	32	80	10	91	34	3	6	54	1.44
19070886--19070927	17	2.4	17	88	4	57	47	0	2	50	1.14
19072827--19073104	29	9.5	29	70	13	158	36	24	5	33	1.77
19072791--19073329	59	9.2	59	78	5	393	35	23	6	34	1.80
19072886--19073347	29	15.8	28	68	14	191	35	23	6	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19072791--19073339	118	4.7	117	83	4	561	34	23	6	35	1.81
19082282--19082354	36	2.1	35	94	2	128	27	16	9	46	1.78
19085887--19085921	15	2.2	16	90	5	54	60	0	0	40	0.97
19086817--19086878	26	2.3	26	81	8	72	33	3	3	59	1.29
19086838--19086888	19	2.8	18	76	5	57	39	3	1	54	1.30
19086838--19086892	18	3.0	18	78	5	65	38	3	1	56	1.28
19086814--19086899	45	1.9	45	86	9	122	34	5	2	56	1.36
19086812--19086912	45	2.2	45	79	8	116	33	4	1	59	1.30
19086983--19087026	21	2.0	22	86	4	63	38	0	0	61	0.96
19087181--19087221	20	2.0	21	86	9	59	39	2	2	56	1.26
19087344--19087421	32	2.5	31	93	4	129	39	10	21	28	1.86
19093472--19093829	30	12.0	29	80	5	331	36	3	21	37	1.72
19094941--19095010	7	10.3	7	77	14	67	45	2	1	50	1.25
19094941--19095025	13	6.7	13	72	17	56	44	2	1	51	1.21
19095564--19095634	28	2.5	28	95	0	133	14	14	25	46	1.81
19095673--19095737	17	4.0	17	78	11	73	53	0	4	41	1.21
19095686--19095756	11	6.5	11	72	15	58	56	0	4	39	1.19
19095657--19095754	31	3.3	29	81	6	99	53	0	4	42	1.20
19096236--19096415	31	5.4	31	69	14	135	28	20	16	34	1.95
19096186--19096763	76	8.0	69	89	6	651	29	20	15	33	1.94
19096439--19096643	39	5.4	38	67	21	151	31	21	13	33	1.92
19096464--19096653	37	5.2	33	66	22	110	32	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19096664--19096776	37	3.0	38	69	14	115	28	19	15	36	1.93
19096118--19096758	152	4.4	143	86	7	769	30	20	15	33	1.93
19108669--19108934	30	8.9	29	82	3	289	35	4	24	36	1.75
19108669--19108936	60	4.5	59	86	5	367	35	4	24	36	1.75
19108682--19108934	59	4.2	59	88	5	355	36	4	22	36	1.75
19110045--19110129	13	6.7	13	75	15	56	45	2	1	50	1.22
19110045--19110120	19	3.9	19	76	8	73	47	2	1	48	1.24
19110684--19110753	28	2.5	27	93	6	122	14	14	25	45	1.82
19110792--19110856	17	4.0	17	78	11	73	53	0	4	41	1.21
19110805--19110875	11	6.5	11	72	15	58	56	0	4	39	1.19
19110776--19110873	31	3.3	29	81	6	99	53	0	4	42	1.20
19112508--19112599	48	2.0	47	85	8	125	35	4	1	58	1.25
19112667--19112704	15	2.4	17	82	13	53	28	0	0	71	0.87
19112673--19112719	24	2.0	22	84	8	58	38	0	0	61	0.96
19114873--19115046	49	3.6	49	83	4	199	18	16	36	29	1.92
19117082--19117120	18	2.2	18	86	9	53	17	2	5	74	1.12
19117421--19117530	5	22.0	5	73	10	82	31	3	17	47	1.65
19117421--19117531	20	5.3	19	78	16	105	31	3	17	47	1.64
19117413--19117544	45	3.0	43	81	12	155	31	4	18	45	1.69
19117413--19117546	40	3.2	40	84	7	153	32	5	17	44	1.71
19117474--19117544	20	3.5	20	96	0	124	32	4	16	46	1.67
19121000--19121047	18	2.7	18	86	0	78	64	14	18	2	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19124715--19125256	269	2.0	269	95	0	987	36	14	19	28	1.92
19136936--19136974	19	2.1	19	100	0	78	30	25	20	23	1.98
19137281--19137330	24	2.1	24	92	0	82	30	26	14	30	1.94
19139722--19139854	70	1.9	67	84	4	176	42	12	12	32	1.81
19143869--19143903	18	2.0	17	88	5	52	37	20	0	42	1.52
19151212--19151249	19	2.0	19	89	0	58	47	23	7	21	1.77
19151962--19152003	17	2.5	17	84	0	57	61	9	2	26	1.39
19152476--19152561	11	8.0	11	71	14	63	43	0	1	55	1.07
19152481--19152559	42	1.9	41	87	7	115	41	0	0	58	0.98
19152475--19152561	6	15.0	6	73	15	76	42	0	1	56	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135