genome.fa.s10.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  107  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36776489--36776532	10	4.2	10	80	8	52	38	0	2	59	1.10
36778877--36778923	4	11.8	4	84	8	60	76	0	21	2	0.89
36778915--36778947	7	4.9	7	92	3	50	60	0	39	0	0.97
36778873--36778953	29	2.8	28	77	7	81	70	0	28	1	0.95
36779151--36779227	23	3.2	24	75	12	61	23	0	11	64	1.26
36779300--36779342	21	2.1	21	86	4	61	25	2	13	58	1.48
36779904--36779997	30	3.2	30	68	8	75	39	4	10	45	1.58
36781857--36781903	21	2.2	21	88	0	67	23	34	17	25	1.96
36782129--36782201	28	2.6	28	80	2	85	42	30	5	21	1.76
36785252--36785276	13	1.9	13	100	0	50	0	24	0	76	0.80
36786951--36786992	22	1.9	22	95	0	75	30	14	14	40	1.85
36789921--36789964	9	4.9	9	80	8	54	29	2	2	65	1.16
36794858--36794899	13	3.0	15	76	16	54	83	0	14	2	0.75
36794858--36794899	21	2.0	22	90	4	68	83	0	14	2	0.75
36795943--36796110	86	2.0	86	84	2	221	34	11	32	21	1.90
36796027--36796461	49	8.8	49	71	5	302	35	15	29	19	1.93
36796027--36796461	197	2.2	198	86	0	611	35	15	29	19	1.93
36796027--36796603	99	5.8	99	83	2	619	35	15	29	19	1.93
36796027--36796603	296	1.9	296	82	3	705	35	15	29	19	1.93
36796915--36797207	113	2.6	114	85	2	392	34	15	25	23	1.95
36802770--36803014	43	5.7	42	85	3	276	27	26	18	26	1.98
36809069--36809110	22	2.0	20	90	9	66	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36809102--36809218	33	3.4	34	79	10	137	41	0	9	48	1.35
36809127--36809212	30	2.8	30	81	14	111	44	0	9	46	1.35
36809247--36809411	34	4.6	34	75	12	116	43	0	10	46	1.39
36809322--36809545	34	6.8	34	73	8	135	41	0	10	48	1.37
36809448--36809505	4	14.0	4	80	3	53	50	0	5	44	1.24
36809558--36809653	30	3.1	30	75	16	104	37	0	12	50	1.41
36809500--36809604	48	2.2	48	85	0	138	38	0	12	49	1.41
36809548--36809652	34	3.2	33	77	11	126	40	0	11	48	1.39
36809612--36810047	90	4.9	89	73	11	335	43	0	9	47	1.38
36809079--36809335	119	2.1	124	87	7	341	42	0	9	47	1.36
36809325--36810046	128	5.4	127	79	12	697	42	0	9	47	1.38
36809863--36809955	34	2.7	34	86	0	114	45	0	8	46	1.34
36809325--36810074	132	5.6	132	82	10	993	41	0	10	48	1.38
36810242--36810268	10	2.7	10	100	0	54	40	0	11	48	1.39
36811863--36811906	15	2.9	15	79	0	52	36	4	25	34	1.76
36812023--36812200	41	4.3	41	83	4	216	17	30	20	31	1.96
36812070--36812346	146	1.9	146	84	3	378	18	29	20	32	1.96
36812146--36812270	64	2.0	64	87	3	180	16	26	23	34	1.95
36812216--36812353	41	3.4	41	78	6	145	18	28	19	33	1.95
36811966--36812348	187	2.0	187	91	0	622	17	28	21	32	1.96
36812297--36812399	52	2.0	51	84	5	136	15	30	20	33	1.94
36814662--36814723	21	2.8	22	72	13	56	38	25	9	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36817436--36817475	20	2.0	20	90	4	64	72	10	17	0	1.11
36824694--36824811	45	3.0	38	78	15	98	44	16	5	33	1.72
36824725--36824838	45	2.5	45	97	0	210	44	19	5	30	1.72
36824986--36825126	45	3.2	43	83	8	167	41	16	7	34	1.77
36825095--36825155	29	2.1	29	90	0	95	44	18	1	36	1.59
36825124--36826121	45	22.5	45	87	3	1382	43	17	5	33	1.73
36825663--36825819	37	4.1	36	78	17	142	45	17	3	33	1.66
36826178--36826268	17	5.4	17	83	0	110	39	3	4	52	1.38
36826204--36826269	6	11.5	6	70	15	50	42	4	1	51	1.31
36826209--36826269	11	5.4	11	73	11	52	40	3	1	54	1.27
36826178--36826281	34	3.1	34	77	2	111	43	2	3	50	1.35
36827986--36828060	30	2.5	30	73	4	71	40	26	2	30	1.70
36827986--36828264	29	9.4	29	72	5	121	36	24	3	35	1.72
36828170--36828282	59	1.9	59	83	7	149	35	24	4	35	1.76
36828565--36828758	98	2.0	98	89	2	300	29	19	13	37	1.90
36840305--36840721	39	10.8	38	77	10	303	23	31	20	25	1.98
36840305--36840721	78	5.4	78	83	5	368	23	31	20	25	1.98
36840346--36840671	116	2.8	116	86	2	440	21	33	19	25	1.97
36840298--36840722	116	3.7	114	81	3	429	23	31	20	25	1.98
36841177--36841267	17	5.4	17	78	0	92	38	4	5	51	1.45
36841177--36841280	34	3.1	34	74	2	102	42	3	4	49	1.42
36843042--36843113	30	2.4	30	86	9	85	34	20	5	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36843062--36843198	27	4.9	28	85	8	154	32	22	6	38	1.80
36843062--36843285	29	7.8	28	82	5	211	30	25	7	36	1.83
36843148--36843332	87	2.1	88	79	6	198	30	27	6	35	1.82
36843584--36843781	98	2.0	98	90	3	310	29	18	14	37	1.90
36844737--36844865	29	4.4	29	78	7	145	51	13	15	19	1.77
36844731--36844865	58	2.3	58	83	2	173	50	14	16	19	1.78
36860510--36860685	86	2.0	86	97	0	334	21	21	23	33	1.97
36866875--36866910	17	2.1	17	100	0	72	5	25	22	47	1.73
36867232--36867280	21	2.2	23	78	10	57	44	2	0	53	1.12
36867243--36867295	23	2.4	22	85	14	74	37	1	0	60	1.08
36867774--36867805	12	2.8	12	95	4	57	71	0	0	28	0.86
36870021--36870131	58	1.9	57	83	5	143	20	12	26	40	1.88
36871498--36871539	19	2.2	19	83	8	50	2	23	2	71	1.10
36871929--36871961	16	2.1	16	94	0	57	36	3	18	42	1.66
36877549--36877787	29	8.0	29	81	6	230	35	26	3	33	1.73
36877549--36877787	30	8.0	29	78	6	212	35	26	3	33	1.73
36877549--36877792	59	4.1	58	82	6	213	36	26	3	33	1.73
36902101--36902141	21	2.0	21	90	0	64	19	17	26	36	1.94
36903195--36903233	21	1.9	20	84	5	51	12	2	12	71	1.24
36910017--36910067	12	4.5	11	77	18	59	5	29	11	52	1.61
36910015--36910072	23	2.5	23	91	5	91	5	29	12	53	1.59
36910017--36910073	29	2.0	29	82	6	71	5	29	12	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36910876--36911383	39	13.0	39	81	1	523	25	16	29	28	1.97
36911410--36912084	49	13.9	49	70	6	345	19	27	17	35	1.94
36911414--36912082	98	6.9	98	82	2	776	19	27	17	35	1.94
36911414--36912083	193	3.4	195	82	2	812	19	27	17	35	1.94
36913103--36913207	18	5.4	17	68	25	57	1	16	3	78	0.99
36913110--36913182	13	5.5	13	78	16	69	2	16	1	79	0.92
36913103--36913188	23	4.0	22	70	20	65	2	16	2	79	0.95
36913103--36913206	40	2.6	40	96	1	190	1	16	2	78	0.95
36913103--36913200	20	4.8	22	76	16	104	2	16	3	78	0.97
36913110--36913206	7	14.3	7	68	18	62	2	16	2	79	0.92
36913136--36913207	18	3.7	19	73	20	69	1	15	4	79	0.96
36914130--36914175	8	5.5	8	80	10	56	2	10	2	84	0.79
36918250--36918562	152	2.1	152	96	0	572	34	18	18	28	1.95
36921218--36921269	17	3.1	17	82	0	68	23	40	21	15	1.91
36921711--36921763	18	3.1	17	82	12	56	24	0	18	56	1.42
36923169--36923213	22	2.0	22	83	8	56	42	0	0	57	0.98
36923173--36923212	19	2.2	19	86	4	55	42	0	0	57	0.98
36923560--36923617	16	3.7	15	81	6	62	44	3	22	29	1.69
36923892--36923940	21	2.3	21	86	10	64	63	0	0	36	0.95
36923766--36923937	56	3.0	57	82	9	147	54	1	0	43	1.12
36923892--36923939	23	2.1	22	85	11	62	62	0	0	37	0.95
36929100--36929183	18	4.4	18	82	5	78	13	34	16	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36929089--36929192	20	5.4	18	79	7	91	12	31	16	39	1.86
36935664--36935713	17	2.6	19	75	21	50	44	16	4	36	1.66
36935821--36935877	21	2.8	20	84	7	69	29	14	21	35	1.92
36940991--36941027	2	18.5	2	94	0	65	51	0	0	48	1.00
36941572--36941731	20	8.0	20	72	13	98	14	33	16	35	1.89
36941559--36941690	40	3.3	40	84	6	151	13	31	15	40	1.86
36943285--36943381	48	2.0	48	97	0	185	28	26	14	29	1.95
36944044--36944084	19	2.2	19	95	0	73	41	31	0	26	1.56
36945277--36945340	26	2.5	26	81	0	74	31	21	18	28	1.97
36945355--36945424	25	2.8	25	82	0	77	34	24	15	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135