genome.fa.s10.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  92  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31119435--31119475	19	2.2	19	86	0	55	29	2	2	65	1.18
31119437--31119512	19	3.9	19	69	17	50	34	1	2	61	1.18
31126151--31126180	3	9.7	3	92	7	51	0	36	0	63	0.95
31148150--31148222	37	2.0	37	88	0	110	27	31	17	23	1.97
31148247--31148347	38	2.7	37	80	7	132	31	23	15	28	1.96
31148334--31148387	26	2.1	26	86	6	74	27	18	24	29	1.98
31156091--31156200	26	4.2	26	88	2	159	24	25	18	31	1.97
31156477--31156528	26	2.1	24	82	7	59	40	9	9	40	1.71
31156734--31156963	85	2.7	86	77	15	198	22	7	5	65	1.38
31162302--31162390	46	1.9	46	88	0	133	49	14	21	14	1.79
31162381--31162436	6	9.7	6	81	11	64	83	0	16	0	0.64
31162379--31162459	28	2.9	28	76	7	83	80	1	18	0	0.78
31162379--31162456	16	4.7	16	78	10	68	80	1	17	0	0.77
31162397--31162459	22	2.8	22	81	9	74	77	1	20	0	0.85
31163483--31163985	49	10.3	49	76	3	377	40	18	23	17	1.91
31163469--31163985	98	5.3	97	77	5	443	40	17	24	17	1.91
31163477--31164006	196	2.7	196	80	2	584	40	18	23	18	1.91
31163506--31163980	147	3.2	147	76	6	455	40	17	23	18	1.91
31164014--31164545	45	11.9	45	85	1	669	30	26	16	26	1.97
31164014--31164546	179	3.0	177	87	4	739	30	26	16	26	1.97
31170762--31170793	15	2.0	17	88	11	50	28	15	6	50	1.68
31178817--31178855	21	1.9	21	89	5	62	12	12	7	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31181759--31181810	25	2.0	27	85	14	74	76	0	17	5	0.97
31181751--31181808	13	4.5	13	75	18	50	75	0	20	3	0.94
31181751--31181809	20	3.1	19	74	16	59	76	0	20	3	0.93
31192478--31192626	42	3.5	42	83	2	183	40	10	24	24	1.86
31193303--31193341	3	13.3	3	94	5	71	69	0	0	30	0.89
31194376--31194502	20	5.7	20	73	23	110	33	22	26	17	1.96
31194379--31194502	27	4.6	28	79	4	105	31	23	27	17	1.97
31194376--31194505	47	2.8	47	93	0	233	32	22	27	17	1.96
31194562--31194630	21	3.3	21	91	2	113	14	1	33	50	1.52
31194605--31194643	16	2.4	16	91	8	62	17	0	35	46	1.49
31195109--31195142	17	2.0	17	100	0	68	82	0	17	0	0.67
31195108--31195141	10	3.3	10	87	4	50	85	0	14	0	0.60
31200573--31200601	3	10.0	3	92	7	51	68	0	0	31	0.89
31201636--31201784	20	7.8	20	80	11	161	36	22	24	16	1.94
31201646--31201803	27	6.3	26	73	17	131	33	22	25	17	1.96
31201636--31201777	47	3.0	47	88	1	223	37	21	23	16	1.94
31201761--31201803	11	3.7	11	87	6	50	30	25	25	18	1.98
31201785--31201823	10	3.8	10	82	3	51	20	28	33	17	1.96
31201845--31201879	15	2.4	15	90	4	54	14	5	31	48	1.67
31201854--31201922	21	3.3	21	91	2	113	14	1	33	50	1.52
31201897--31201927	15	2.0	16	93	6	55	19	0	32	48	1.49
31208543--31208570	9	3.1	9	100	0	56	64	10	0	25	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31209387--31209529	42	3.4	42	86	2	189	41	11	25	21	1.86
31219718--31219749	2	16.0	2	93	0	55	46	0	3	50	1.17
31220301--31220333	17	1.9	17	100	0	66	36	0	30	33	1.58
31221253--31221286	17	2.1	16	88	5	50	61	2	0	35	1.11
31221884--31221974	3	30.7	3	72	6	51	69	21	4	4	1.24
31221884--31221988	12	8.8	12	80	2	113	68	22	4	3	1.25
31221885--31221988	35	2.9	35	81	4	66	68	23	4	3	1.26
31221884--31221988	47	2.2	48	86	1	140	68	22	4	3	1.25
31221884--31221988	24	4.4	23	85	4	129	68	22	4	3	1.25
31227446--31227496	26	1.9	26	84	11	68	66	1	0	31	1.03
31231901--31232036	44	3.1	44	81	8	138	27	28	8	36	1.85
31235978--31236050	37	2.0	37	86	5	103	28	2	1	67	1.13
31236559--31236606	20	2.4	20	100	0	96	27	22	10	39	1.87
31237048--31237126	38	2.1	39	85	2	106	37	2	24	35	1.69
31237497--31237536	20	2.0	20	90	5	62	30	0	2	67	1.04
31248647--31248686	21	1.9	21	94	0	71	40	15	17	27	1.89
31249187--31249385	50	4.0	50	85	2	247	34	22	18	24	1.96
31249168--31249386	75	2.9	75	84	5	262	34	21	19	24	1.96
31249186--31249390	25	8.2	25	81	1	223	33	23	18	24	1.97
31261349--31261377	12	2.4	12	100	0	58	75	0	24	0	0.80
31269808--31270009	78	2.6	78	80	4	246	20	17	30	30	1.96
31281496--31281550	24	2.2	24	87	3	74	45	9	16	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31283918--31283964	3	16.0	3	82	12	62	0	31	0	68	0.90
31283918--31283972	24	2.4	23	85	8	69	0	34	0	65	0.93
31287938--31288352	204	2.0	204	91	0	677	33	20	18	27	1.96
31291911--31291965	24	2.2	24	90	3	83	45	10	16	27	1.80
31294872--31294940	21	3.5	21	65	25	60	8	21	31	37	1.84
31294851--31295109	37	7.0	37	88	1	342	12	20	30	37	1.89
31312591--31312623	8	4.2	8	88	7	50	72	0	27	0	0.85
31312591--31312623	15	2.1	16	88	5	50	72	0	27	0	0.85
31314613--31314675	25	2.6	23	82	12	65	46	1	41	11	1.49
31318548--31318602	28	2.0	28	92	0	92	23	21	9	45	1.80
31318555--31318841	29	10.0	28	68	15	99	26	18	8	47	1.77
31318640--31318792	29	5.3	29	71	13	100	26	16	8	48	1.75
31318546--31318792	58	4.3	59	75	6	229	25	17	8	47	1.76
31319896--31320028	40	3.3	40	91	0	212	22	29	9	38	1.86
31320054--31320159	43	2.5	43	84	7	137	27	22	12	37	1.90
31322901--31322955	22	2.6	21	82	2	65	30	23	18	27	1.97
31323639--31323928	52	5.6	52	84	4	354	36	23	13	27	1.91
31323639--31323928	156	1.9	155	88	0	436	36	23	13	27	1.91
31329484--31329583	29	3.6	29	72	8	98	24	11	10	55	1.65
31329546--31329757	58	3.7	58	80	1	228	25	16	9	48	1.77
31329597--31329755	29	5.5	30	67	8	87	25	17	9	47	1.77
31329523--31329760	116	2.1	115	84	4	300	25	16	9	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31329665--31329754	29	3.1	30	75	4	94	22	16	8	52	1.71
31329654--31329755	29	3.5	29	74	6	89	23	17	8	50	1.74
31329539--31329792	58	4.4	55	73	10	170	24	16	9	50	1.73
31332488--31332558	30	2.4	30	79	9	81	38	4	25	32	1.75
31333920--31333974	22	2.4	23	90	3	85	16	14	43	25	1.86
31334607--31334788	98	1.9	98	87	2	267	18	29	17	34	1.94
31334819--31334987	49	3.4	49	76	4	180	17	34	15	31	1.92
31334744--31334989	99	2.5	98	82	3	280	18	31	15	34	1.92
31336679--31336760	40	2.0	40	100	0	164	31	15	24	28	1.96
31346177--31346223	24	2.0	24	91	0	76	57	10	2	29	1.44
31348994--31349039	20	2.3	20	84	0	56	41	6	15	36	1.73
31349435--31349497	29	2.2	29	100	0	126	26	7	15	49	1.72
31353565--31353598	7	4.9	7	86	13	52	32	0	11	55	1.36
31355253--31355429	53	3.4	53	88	2	277	28	14	21	35	1.93
31360657--31360712	27	2.1	27	100	0	112	53	10	7	28	1.62
31360654--31360704	6	9.2	6	83	12	56	50	13	3	31	1.60
31365664--31365738	38	1.9	40	89	5	118	25	12	22	40	1.88
31375501--31375538	20	1.9	20	100	0	76	52	21	10	15	1.72
31375526--31375608	7	11.9	7	82	10	80	33	22	15	27	1.95
31375525--31375607	14	5.9	14	85	0	103	34	21	15	27	1.94
31375625--31375660	18	2.1	18	94	5	65	16	16	38	27	1.90
31377343--31377419	23	3.4	23	73	8	77	20	19	9	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31377323--31377419	46	2.1	48	86	3	135	22	18	8	50	1.73
31380837--31380885	23	2.1	23	84	0	62	20	20	10	48	1.78
31384259--31384320	18	3.5	17	79	16	72	32	17	20	29	1.96
31389662--31389792	37	3.6	36	78	4	127	34	27	13	24	1.93
31389773--31389900	36	3.6	36	88	2	177	38	20	15	25	1.92
31389823--31389882	18	3.4	17	75	25	61	43	18	11	26	1.84
31392781--31392900	55	2.2	55	86	0	159	23	25	26	24	2.00
31393600--31393714	26	4.5	27	79	7	125	30	25	13	30	1.94
31397785--31397825	20	2.0	20	90	0	64	26	19	7	46	1.76
31399500--31400727	409	3.0	409	98	0	2375	34	16	8	40	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135