genome.fa.s10.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  48  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17196717--17196782	27	2.4	27	79	2	69	30	1	4	63	1.23
17203701--17203750	16	3.1	16	79	2	64	64	0	2	34	1.05
17212477--17212511	13	2.7	13	91	8	54	68	0	5	25	1.11
17213275--17213327	15	3.5	14	76	16	52	41	0	0	58	0.98
17213727--17213773	17	2.8	16	90	9	76	42	14	21	21	1.88
17214445--17214514	30	2.3	30	82	0	86	30	10	5	54	1.57
17214786--17214842	18	3.1	18	79	5	60	24	5	17	52	1.65
17214815--17214885	28	2.5	28	86	2	97	22	2	16	57	1.52
17214835--17214882	19	2.6	18	77	6	51	22	2	18	56	1.52
17215715--17215773	2	29.5	2	100	0	118	49	0	0	50	1.00
17220820--17220852	2	16.5	2	100	0	66	48	0	0	51	1.00
17221655--17221701	25	1.9	25	82	4	60	46	4	0	48	1.21
17225291--17225319	15	1.9	15	100	0	58	65	13	0	20	1.26
17225419--17225677	58	4.4	59	77	7	217	33	5	24	36	1.80
17225477--17225532	29	1.9	29	89	7	87	37	3	19	39	1.69
17225487--17225708	29	7.7	29	72	16	122	35	4	22	36	1.76
17225451--17225687	58	4.1	57	79	5	224	32	4	25	37	1.77
17227618--17227726	6	19.2	6	72	14	88	54	0	2	42	1.21
17227622--17227726	17	5.9	17	70	16	61	54	0	2	41	1.21
17227618--17227731	45	2.5	45	87	5	151	54	0	2	42	1.20
17228264--17228371	36	2.9	36	81	4	126	27	21	29	21	1.98
17228717--17230190	49	29.9	49	66	13	499	16	25	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17229212--17229362	50	3.0	50	67	18	141	14	26	21	37	1.92
17228725--17230190	199	7.4	198	84	2	1693	16	25	20	37	1.93
17228725--17230190	99	14.9	99	84	2	1675	16	25	20	37	1.93
17228768--17230193	496	2.9	492	85	3	1800	16	24	20	37	1.93
17237585--17237627	22	2.0	22	90	0	68	20	11	46	20	1.82
17241840--17241879	12	3.6	12	77	19	50	60	0	5	35	1.19
17242727--17243385	45	14.7	44	80	3	500	27	18	23	31	1.97
17242723--17243392	90	7.5	89	79	4	596	27	17	23	31	1.97
17242723--17243392	135	5.0	134	80	5	721	27	17	23	31	1.97
17245871--17245925	22	2.5	22	82	5	67	50	3	12	32	1.58
17250066--17250256	94	2.0	94	89	0	292	29	22	25	23	1.99
17251256--17251289	15	2.2	15	89	5	50	8	0	14	76	1.01
17255468--17255517	26	1.9	26	87	0	73	50	10	10	30	1.69
17255512--17255536	13	1.9	13	100	0	50	48	20	0	32	1.50
17264958--17265000	18	2.3	19	77	14	54	62	0	34	2	1.08
17270314--17270387	31	2.4	31	95	0	130	47	20	1	31	1.59
17270461--17270500	12	3.4	12	82	6	55	70	2	0	27	1.01
17276435--17276594	80	2.0	80	100	0	320	31	13	20	35	1.91
17278595--17278633	2	19.5	2	100	0	78	48	0	51	0	1.00
17278957--17279032	35	2.2	35	81	9	84	48	2	2	46	1.30
17279068--17279093	7	3.7	7	100	0	52	26	30	0	42	1.56
17290130--17290176	24	2.0	24	84	12	62	29	2	2	65	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17302436--17302538	39	2.6	39	83	6	136	25	12	29	33	1.92
17303235--17303276	21	1.9	23	85	9	61	59	0	11	28	1.33
17305907--17306107	41	4.9	41	82	1	217	32	20	28	18	1.96
17309846--17310030	43	4.3	42	80	4	201	23	17	26	31	1.97
17309869--17310030	85	1.9	85	87	1	218	24	19	24	31	1.98
17310085--17310109	12	2.1	12	100	0	50	24	32	28	16	1.96
17311045--17311094	24	2.1	24	92	0	82	44	20	14	22	1.86
17317256--17317360	52	2.0	53	92	1	176	30	17	20	32	1.95
17320011--17320048	2	19.0	2	100	0	76	0	50	0	50	1.00
17329113--17329171	31	1.9	31	82	6	75	27	23	27	22	1.99
17329624--17329652	3	9.7	3	100	0	58	34	0	0	65	0.93
17349655--17349706	26	2.0	26	84	0	68	48	0	1	50	1.12
17361452--17361839	29	13.4	28	80	8	350	36	1	24	37	1.64
17363577--17363657	6	13.7	6	71	16	53	55	2	1	40	1.21
17363577--17363657	13	6.8	13	69	18	59	55	2	1	40	1.21
17363585--17363654	17	4.1	17	85	7	97	57	2	1	38	1.23
17375997--17376497	168	3.0	167	88	0	714	38	16	20	24	1.92
17380035--17380085	24	2.1	23	82	13	59	58	3	1	35	1.28
17381418--17381442	7	3.6	7	100	0	50	32	0	16	52	1.44
17381761--17381785	2	12.5	2	100	0	50	52	0	0	48	1.00
17384877--17384931	27	2.1	26	82	3	65	30	12	16	40	1.86
17385636--17385757	12	10.4	12	65	16	60	42	0	3	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17385667--17385752	20	4.7	18	76	23	90	45	1	3	50	1.26
17385669--17385752	37	2.3	37	95	0	150	45	1	3	50	1.27
17386949--17386994	20	2.4	19	85	7	58	47	0	8	43	1.34
17392677--17392714	14	2.6	15	79	4	51	44	5	0	50	1.24
17402069--17402141	34	2.2	32	85	9	94	46	4	2	46	1.36
17402703--17402736	11	3.1	11	82	0	50	29	17	0	52	1.45
17403138--17403177	3	13.3	3	100	0	80	65	0	0	35	0.93
17403268--17403292	13	1.9	13	100	0	50	72	0	0	28	0.86
17406351--17406738	59	6.6	60	87	6	494	34	3	29	32	1.74
17406351--17406738	176	2.2	177	86	5	527	34	3	29	32	1.74
17407466--17407499	11	3.0	12	87	12	54	0	20	0	79	0.73
17407466--17407499	12	2.9	11	91	8	50	0	20	0	79	0.73
17407757--17407781	3	8.3	3	100	0	50	32	0	0	68	0.90
17407799--17407842	19	2.3	19	80	0	52	36	4	2	56	1.32
17407800--17407841	16	2.4	18	84	11	52	35	4	2	57	1.33
17408565--17408614	26	1.9	26	100	0	100	22	12	30	36	1.90
17408818--17409609	38	21.2	37	65	22	254	30	19	15	34	1.93
17408802--17409629	76	11.1	76	88	4	1114	31	19	15	34	1.93
17408804--17409629	153	5.5	152	90	3	1101	30	19	15	34	1.93
17421560--17421949	59	6.6	60	87	6	498	34	3	29	32	1.75
17421562--17421949	176	2.2	177	86	5	527	34	3	29	32	1.74
17422675--17422720	12	3.9	11	83	11	56	0	17	2	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17422679--17422726	24	2.0	25	88	8	73	2	14	4	79	0.98
17422981--17423018	16	2.3	16	95	4	67	36	0	0	63	0.95
17422978--17423076	19	5.3	19	68	19	57	38	5	1	55	1.29
17423034--17423075	16	2.4	18	84	11	52	35	4	2	57	1.33
17423742--17423809	16	4.1	17	83	5	77	51	1	2	44	1.25
17429447--17429516	3	23.7	3	97	2	133	67	0	0	32	0.91
17434462--17434512	21	2.5	22	84	15	74	68	0	0	31	0.90
17434465--17434512	10	4.8	10	85	7	62	68	0	0	31	0.90
17434495--17434557	29	2.2	29	88	5	92	55	1	3	39	1.25
17434531--17434580	20	2.5	20	100	0	100	50	0	4	46	1.20
17434805--17434907	10	10.9	10	72	21	71	34	0	0	63	1.08
17434803--17434868	28	2.3	29	82	7	82	36	1	0	62	1.05
17434818--17434926	46	2.4	45	85	7	141	30	1	0	66	1.08
17434806--17434914	9	11.7	9	71	16	62	33	1	0	64	1.11
17436972--17437321	121	3.0	116	83	14	456	33	7	12	46	1.70
17443479--17443542	4	16.2	4	77	9	51	71	0	26	1	0.94
17443684--17443718	18	1.9	18	94	0	61	25	0	14	60	1.35
17443738--17443815	23	3.3	23	74	15	61	26	1	7	64	1.29
17444652--17444698	15	3.1	15	77	17	60	59	8	0	31	1.27
17444650--17444700	16	3.2	16	78	15	70	58	7	0	33	1.27
17448154--17448206	24	2.2	24	86	0	70	30	24	20	24	1.99
17448162--17448212	24	2.1	24	88	0	75	31	21	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17448210--17448273	27	2.4	27	91	0	101	43	18	10	26	1.83
17452673--17452740	4	17.0	4	87	6	75	0	33	0	66	0.92
17452665--17452723	20	3.0	20	82	5	75	0	38	0	61	0.96
17452827--17452865	19	2.1	19	90	0	60	66	20	0	12	1.24
17455021--17455213	104	1.9	104	84	2	262	24	26	12	35	1.91
17455964--17456013	8	5.9	8	79	11	55	80	0	4	16	0.87
17458588--17458629	16	2.6	16	77	7	50	71	0	9	19	1.13
17459425--17459467	19	2.3	19	84	8	52	58	4	0	37	1.19
17460454--17460512	9	6.2	9	78	9	64	35	0	3	61	1.13
17465662--17465696	17	2.1	17	89	10	54	40	5	14	40	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135