genome.fa.s10.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  113  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38368809--38369103	98	3.1	96	78	10	332	37	16	25	20	1.93
38369173--38369364	41	4.5	40	72	12	114	34	15	26	23	1.94
38369127--38369320	90	2.1	90	83	0	235	34	16	26	23	1.95
38369148--38369345	90	2.2	90	82	0	234	33	16	25	24	1.95
38369287--38369566	41	6.4	41	68	14	139	33	16	26	23	1.96
38369197--38369454	131	2.0	131	88	1	383	34	14	25	24	1.94
38369304--38369995	90	7.4	90	80	6	508	34	16	26	22	1.95
38369132--38369566	221	2.0	221	83	0	546	33	16	25	23	1.96
38369523--38369993	49	9.8	48	75	6	416	35	16	26	21	1.94
38369616--38370007	98	4.0	98	86	2	518	34	16	27	21	1.94
38369341--38369994	196	3.5	187	82	5	671	34	16	26	21	1.95
38372132--38372180	24	2.0	25	85	14	68	28	12	2	57	1.46
38373149--38373197	25	1.9	26	91	4	82	34	6	8	51	1.57
38376879--38376903	6	4.2	6	100	0	50	32	0	0	68	0.90
38377063--38377137	29	2.6	29	91	0	114	25	6	13	54	1.63
38378221--38378277	25	2.3	25	93	3	98	43	5	8	42	1.58
38380185--38380215	4	7.8	4	100	0	62	51	22	0	25	1.48
38393470--38393497	3	9.3	3	100	0	56	35	0	0	64	0.94
38393824--38393853	16	1.9	16	93	6	53	66	0	0	33	0.92
38394000--38394067	31	2.2	32	83	2	84	44	10	13	32	1.77
38394343--38394393	26	2.0	26	84	0	66	35	9	7	47	1.66
38394896--38394953	26	2.2	27	84	3	73	15	5	20	58	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38398742--38398811	30	2.4	28	75	13	70	40	10	0	50	1.36
38400092--38400151	27	2.3	27	85	5	79	18	13	35	33	1.89
38400298--38400364	20	3.5	19	80	13	66	65	0	34	0	0.93
38400934--38400979	17	2.7	17	75	18	51	23	0	8	67	1.18
38400934--38401002	30	2.2	32	82	15	81	26	0	7	66	1.17
38401240--38401273	17	2.0	17	94	0	59	0	38	0	61	0.96
38401232--38401270	21	1.9	20	89	5	60	0	35	0	64	0.94
38404192--38404438	86	2.8	87	78	5	250	33	10	18	38	1.84
38407311--38407367	22	2.5	23	91	5	98	7	29	24	38	1.82
38411479--38411527	21	2.3	21	82	6	64	30	34	4	30	1.76
38424774--38424837	32	2.0	32	100	0	128	46	3	15	34	1.62
38430863--38430901	20	1.9	21	89	5	62	17	20	12	48	1.80
38434319--38434372	21	2.6	21	100	0	108	35	25	12	25	1.92
38434914--38434997	28	3.0	28	87	3	116	23	28	15	32	1.95
38435294--38435332	20	2.0	19	90	5	60	23	25	2	48	1.63
38443115--38443181	5	13.4	5	93	0	116	0	2	40	56	1.14
38444982--38445014	3	11.0	3	100	0	66	66	0	0	33	0.92
38445240--38445304	20	3.5	18	78	17	71	40	1	3	55	1.25
38446923--38446970	24	2.0	24	91	0	78	29	25	20	25	1.99
38449677--38449738	25	2.5	25	80	12	65	43	19	25	11	1.84
38449705--38449779	39	1.9	39	88	0	114	42	21	22	13	1.87
38449699--38449864	23	7.5	22	71	17	103	43	21	22	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38450137--38450348	106	2.0	106	100	0	424	24	21	12	41	1.87
38465250--38465280	16	1.9	16	93	0	53	19	6	6	67	1.35
38465908--38465946	15	2.4	16	83	12	53	30	0	0	69	0.89
38471983--38472058	5	15.2	5	91	0	125	15	39	44	0	1.47
38471982--38472058	20	3.8	20	100	0	154	15	38	45	0	1.46
38472298--38472340	18	2.4	18	80	7	52	51	0	2	46	1.13
38476008--38476034	12	2.2	12	100	0	54	14	14	0	70	1.17
38476980--38477048	6	11.5	6	86	11	79	78	0	5	15	0.94
38476980--38477048	17	3.8	18	79	11	79	78	0	5	15	0.94
38477387--38477509	53	2.3	54	81	13	139	37	3	4	55	1.35
38477491--38477529	9	4.3	9	87	12	62	23	0	2	74	0.94
38487992--38488222	59	3.9	58	78	7	209	39	2	20	37	1.67
38487969--38488074	28	3.7	28	78	12	115	35	1	24	37	1.67
38487997--38488343	118	3.0	118	79	7	325	42	2	21	33	1.67
38487975--38488251	29	9.4	30	72	12	132	39	2	20	36	1.68
38488145--38488343	59	3.4	58	83	6	233	45	3	20	30	1.68
38488178--38488328	29	5.2	28	73	18	87	45	3	21	29	1.67
38489557--38489605	3	16.3	3	87	8	73	34	2	0	63	1.06
38489527--38489605	30	2.6	30	85	2	104	35	3	1	59	1.24
38489518--38489605	12	7.8	11	75	20	60	35	3	1	60	1.21
38490311--38490435	35	3.6	34	82	4	142	52	4	0	43	1.26
38490325--38490427	6	17.7	6	70	9	70	53	4	0	40	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38490311--38490435	17	7.2	17	80	4	142	52	4	0	43	1.26
38490782--38491206	201	2.1	201	88	1	629	23	23	18	35	1.96
38491007--38491438	232	1.9	232	92	0	720	22	23	18	34	1.96
38491557--38491739	39	4.7	39	66	21	123	27	19	30	22	1.98
38491483--38491739	78	3.3	77	85	2	334	26	18	31	24	1.98
38491829--38492186	101	3.5	102	89	2	578	31	16	15	36	1.90
38491843--38492111	50	5.4	49	68	13	154	33	16	14	35	1.89
38491829--38492180	100	3.5	100	88	4	537	31	17	15	35	1.91
38492308--38492789	50	9.8	51	75	9	315	13	24	21	39	1.90
38492311--38492692	150	2.6	148	82	3	405	13	24	20	40	1.89
38492309--38492789	98	4.9	97	78	7	407	13	24	22	39	1.90
38493327--38493570	106	2.3	106	88	2	373	41	9	24	25	1.84
38494097--38494147	20	2.5	21	80	6	59	3	19	0	76	0.94
38494098--38494163	15	4.2	15	74	16	62	3	21	0	75	0.93
38499816--38500030	28	7.4	28	67	15	96	33	3	27	34	1.75
38499817--38499922	28	3.7	28	77	12	115	30	1	31	36	1.68
38499822--38500030	59	3.6	58	81	3	213	34	3	26	35	1.75
38500006--38500103	29	3.3	29	75	8	108	39	3	22	34	1.70
38500006--38500163	30	5.3	30	70	12	103	41	3	22	33	1.70
38499996--38500163	59	2.8	59	85	0	210	41	3	22	32	1.71
38501286--38501327	3	14.0	3	85	9	59	35	2	0	61	1.09
38502042--38502144	6	17.7	6	68	9	61	53	5	0	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38502028--38502152	17	7.2	17	78	4	124	51	4	1	42	1.33
38502028--38502152	35	3.6	34	79	4	124	51	4	1	42	1.33
38503414--38503495	40	2.0	40	97	0	155	42	18	10	28	1.84
38507069--38507107	20	2.1	19	90	9	62	35	2	5	56	1.35
38512170--38512201	6	5.3	6	100	0	64	46	0	37	15	1.46
38514000--38514047	18	2.8	17	81	9	53	72	4	2	20	1.11
38514162--38514256	30	3.2	29	77	14	97	62	2	8	27	1.36
38526092--38526142	19	2.6	20	77	20	54	70	3	5	19	1.24
38526240--38526304	31	2.2	31	86	10	91	61	1	10	26	1.38
38530857--38530896	21	1.9	21	84	0	53	27	17	22	32	1.96
38531632--38531805	23	7.5	23	76	10	140	43	20	22	12	1.86
38531632--38531767	69	2.0	66	87	11	193	44	21	22	11	1.85
38547136--38547321	50	3.7	49	79	5	149	35	19	23	21	1.96
38547504--38547672	90	1.9	90	82	2	214	34	17	21	26	1.95
38547581--38547770	101	1.9	101	85	2	265	34	18	20	26	1.96
38547581--38547805	101	2.2	100	82	6	256	33	18	20	28	1.96
38548031--38548071	9	4.7	9	82	14	50	70	0	2	26	0.99
38548031--38548061	13	2.3	14	94	5	55	74	0	0	25	0.82
38548087--38548133	21	2.2	22	84	3	60	55	34	0	10	1.35
38548834--38548862	10	2.9	10	100	0	58	10	0	20	68	1.18
38550340--38550371	13	2.5	13	100	0	64	71	6	0	21	1.07
38551443--38551501	25	2.3	26	85	8	77	45	5	1	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38555740--38555779	14	2.8	14	84	3	53	47	5	0	47	1.24
38557676--38557729	14	4.6	12	74	19	51	42	1	0	55	1.10
38557676--38557727	11	4.5	11	77	17	52	42	1	0	55	1.10
38557694--38557720	14	1.9	14	100	0	54	37	3	0	59	1.15
38559295--38559600	160	1.9	159	83	4	391	24	17	14	44	1.86
38559707--38560312	58	10.4	59	83	5	743	33	28	2	35	1.70
38559855--38560307	30	15.4	29	66	20	137	34	27	1	35	1.68
38559707--38560312	117	5.2	117	87	4	780	33	28	2	35	1.70
38572500--38572796	76	3.9	76	93	0	504	34	15	16	34	1.90
38572589--38572987	191	2.1	191	92	0	674	35	14	17	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135