genome.fa.s10.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  30  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11844236--11844260	12	2.1	12	100	0	50	8	68	0	24	1.16
11853367--11853424	30	1.9	30	89	0	89	36	18	15	29	1.92
11853794--11853844	26	2.0	26	96	0	93	7	45	9	37	1.67
11865630--11865655	6	4.3	6	100	0	52	84	0	15	0	0.62
11871318--11871390	30	2.3	31	83	6	94	27	15	34	23	1.94
11875142--11875184	22	2.0	21	81	4	50	18	11	9	60	1.57
11881045--11881106	3	20.7	3	96	0	79	32	8	0	59	1.26
11883701--11883735	6	5.8	6	93	0	52	0	45	14	40	1.45
11885504--11885534	15	2.1	15	100	0	62	6	0	32	61	1.21
11892252--11892313	25	2.6	24	76	5	63	40	3	3	53	1.33
11897914--11897947	17	1.9	18	88	5	52	41	8	14	35	1.77
11902373--11902410	18	2.1	18	95	0	67	34	5	7	52	1.53
11903989--11904029	16	2.6	15	85	14	64	68	0	0	31	0.90
11910740--11910773	16	2.1	16	94	0	59	44	0	38	17	1.49
11914557--11914583	7	3.9	7	100	0	54	29	0	25	44	1.54
11934436--11934619	76	2.5	71	82	8	208	47	7	14	30	1.72
11935931--11935985	24	2.3	24	87	6	76	23	5	21	49	1.70
11953325--11953391	28	2.4	28	82	7	73	49	16	0	34	1.46
11953338--11953402	20	3.2	21	82	4	71	44	18	0	36	1.50
11954635--11954674	5	7.8	5	94	5	71	0	22	0	77	0.77
11958907--11958967	27	2.2	28	85	5	81	57	0	0	42	0.98
11961955--11962026	24	3.0	24	93	0	117	8	36	20	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11962309--11962335	2	13.5	2	100	0	54	0	51	0	48	1.00
11963248--11963295	24	2.0	24	84	8	62	20	10	33	35	1.87
11967619--11967675	29	2.0	29	82	0	69	45	3	17	33	1.65
11970846--11971009	24	6.8	24	87	0	238	25	23	25	26	2.00
11971539--11971578	21	1.9	21	89	0	62	27	17	22	32	1.96
11978109--11978145	3	12.3	3	100	0	74	32	0	0	67	0.91
11994167--11994235	21	3.1	21	80	13	68	8	4	17	69	1.31
11994176--11994227	24	2.2	24	86	3	70	9	3	15	71	1.27
11994250--11994351	12	8.8	12	76	6	59	8	5	14	70	1.31
11994199--11994339	68	2.1	68	82	7	171	9	6	15	68	1.36
11994262--11994328	32	2.1	32	82	2	80	8	4	16	70	1.30
11994223--11994354	68	1.9	68	84	3	176	9	6	14	69	1.34
11994482--11994576	49	2.0	47	81	8	111	28	0	8	63	1.24
12000610--12000641	2	16.0	2	93	0	55	53	0	0	46	1.00
12015512--12015541	3	10.3	3	92	7	53	70	0	0	30	0.88
12016586--12016627	20	2.1	20	90	0	66	42	23	19	14	1.87
12016590--12016634	14	3.3	14	87	6	74	40	26	17	15	1.90
12016594--12016650	27	2.4	21	83	16	60	36	29	19	14	1.91
12016642--12016689	10	4.7	10	78	2	51	27	31	25	16	1.97
12016726--12016755	15	2.0	15	93	0	51	20	3	33	43	1.68
12017155--12017227	23	3.1	23	80	3	74	71	0	24	4	1.04
12017155--12017229	11	6.5	11	76	8	69	70	0	25	4	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12017173--12017227	18	3.1	18	72	15	60	72	0	23	3	1.00
12022609--12022659	3	17.3	3	95	4	95	68	0	0	31	0.90
12023705--12023746	20	2.1	20	86	0	57	42	21	19	16	1.89
12023839--12023874	15	2.4	15	85	0	54	25	5	27	41	1.77
12023851--12023918	21	3.2	21	89	2	100	23	2	30	42	1.69
12024289--12024363	11	6.5	11	73	14	62	69	0	25	5	1.09
12024289--12024361	23	3.1	23	75	11	67	69	0	24	5	1.09
12036290--12036427	23	5.9	23	83	7	129	42	23	23	11	1.86
12043257--12043424	30	5.7	29	68	11	108	32	7	32	27	1.84
12043257--12043454	59	3.4	58	86	1	270	32	6	32	27	1.83
12043288--12043438	29	5.1	29	63	14	67	32	6	34	26	1.82
12043441--12043547	30	3.5	30	91	3	162	36	3	22	37	1.72
12043635--12043951	161	2.0	161	89	1	492	44	13	17	25	1.85
12045345--12045384	20	2.0	21	90	5	64	17	17	45	20	1.86
12045429--12045455	14	1.9	14	100	0	54	14	14	29	40	1.86
12045492--12045598	48	2.2	48	81	6	119	48	1	0	48	1.18
12045521--12045583	31	2.0	31	87	0	90	50	3	0	46	1.17
12045491--12045598	6	18.0	6	75	14	89	48	1	0	49	1.18
12045494--12045589	42	2.2	43	80	15	110	47	2	1	48	1.20
12045971--12046114	39	3.7	39	94	1	236	25	19	21	34	1.97
12046079--12046454	69	5.5	69	96	0	673	31	20	15	32	1.94
12046414--12046493	39	2.0	40	90	2	126	32	20	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12058258--12058425	30	5.7	29	68	11	108	32	7	32	27	1.84
12058258--12058455	59	3.4	58	86	1	270	32	6	32	27	1.83
12058289--12058439	29	5.1	29	63	14	67	32	6	34	26	1.82
12058442--12058548	30	3.5	30	91	3	162	36	3	22	37	1.72
12058636--12058952	161	2.0	161	89	1	492	44	13	17	25	1.85
12060346--12060385	20	2.0	21	90	5	64	17	17	45	20	1.86
12060431--12060471	12	3.2	13	80	13	57	14	19	29	36	1.92
12060504--12060617	6	19.0	6	76	13	101	48	1	0	49	1.17
12060534--12060617	37	2.4	36	82	11	104	52	2	0	45	1.13
12060512--12060617	48	2.2	48	85	8	137	49	1	0	49	1.12
12060541--12060602	31	2.0	31	87	0	88	51	3	0	45	1.17
12060878--12060916	19	2.1	18	85	4	51	38	23	0	38	1.55
12067034--12067077	21	2.3	18	85	14	54	45	11	6	36	1.67
12074668--12074702	18	1.9	18	94	0	61	25	14	20	40	1.90
12079705--12079769	27	2.4	27	86	2	85	50	4	4	40	1.43
12079884--12079918	4	8.8	4	100	0	70	51	22	0	25	1.48
12091935--12091969	16	2.2	16	94	0	61	34	14	8	42	1.76
12100687--12100758	33	2.2	32	85	7	92	52	15	2	29	1.56
12106088--12106144	24	2.4	24	84	0	69	49	8	14	28	1.72
12106100--12106147	24	2.0	24	91	0	78	52	6	12	29	1.63
12108046--12108096	24	2.1	24	96	0	93	54	7	11	25	1.63
12149219--12149264	14	3.2	14	80	17	58	28	4	0	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12151190--12151220	14	2.2	14	94	0	53	48	0	0	51	1.00
12153665--12153828	31	5.4	31	72	11	142	46	10	16	26	1.80
12153655--12153828	61	2.9	61	87	1	262	48	10	16	24	1.78
12177376--12177435	29	2.1	29	100	0	120	26	6	21	45	1.77
12186484--12186526	21	2.2	18	84	12	50	32	4	2	60	1.30
12186988--12187015	5	5.6	5	100	0	56	39	60	0	0	0.97
12203427--12203451	12	2.1	12	100	0	50	44	0	8	48	1.32
12206165--12206232	31	2.3	29	79	5	73	54	7	0	38	1.28
12207785--12207847	33	1.9	33	84	12	85	34	20	1	42	1.62
12213972--12214051	31	2.6	31	85	0	106	32	10	12	45	1.75
12220465--12220493	3	9.7	3	100	0	58	34	0	0	65	0.93
12228785--12228822	11	3.5	11	86	13	60	23	2	0	73	0.95
12228857--12228897	19	2.2	19	86	0	55	43	0	9	46	1.36
12239649--12239803	72	2.1	72	79	11	174	35	13	5	45	1.68
12240017--12240050	17	2.1	17	88	5	52	32	2	0	64	1.08
12240046--12240086	18	2.3	18	83	4	57	46	2	7	43	1.44
12242855--12242922	15	4.5	15	88	0	91	29	36	14	19	1.91
12245130--12245171	3	14.0	3	100	0	84	66	0	0	33	0.92
12246045--12246107	32	2.0	32	82	17	78	46	0	3	50	1.17
12250238--12250299	27	2.3	27	83	10	74	56	3	6	33	1.41
12250240--12250308	27	2.5	26	70	23	61	57	4	7	30	1.45
12256066--12256098	15	2.3	15	89	5	50	63	0	6	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12270220--12270250	3	10.3	3	100	0	62	35	0	0	64	0.94
12271436--12271483	21	2.3	22	79	17	57	54	4	0	41	1.20
12279196--12279240	18	2.4	20	85	10	60	40	2	4	53	1.33
12281133--12281161	14	2.0	15	93	6	51	34	41	17	6	1.76
12297191--12297275	41	2.1	41	97	0	161	43	11	7	37	1.69
12297509--12297881	192	1.9	192	95	0	665	21	28	14	35	1.92
12300150--12300402	125	2.0	125	99	0	497	38	19	9	32	1.85
12327783--12327832	24	2.2	22	85	7	64	34	4	2	60	1.27
12339185--12339214	15	1.9	16	93	6	53	66	0	33	0	0.92
12342405--12342478	11	6.5	11	73	17	71	18	17	21	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135