genome.fa.s10.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  116  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39022452--39022562	41	2.8	40	83	2	143	27	28	18	24	1.98
39023296--39023338	4	10.5	4	85	9	52	30	2	0	67	1.03
39023292--39023337	22	2.1	22	84	15	69	32	2	0	65	1.05
39023502--39023540	4	9.8	4	100	0	78	48	25	0	25	1.51
39024060--39024116	30	1.9	30	96	0	105	40	28	0	31	1.57
39024071--39024301	30	7.8	28	79	9	140	36	21	7	34	1.82
39024101--39024301	60	3.4	57	78	7	188	36	20	8	34	1.83
39024102--39024301	90	2.2	90	76	5	208	36	20	8	34	1.83
39026908--39026963	23	2.4	23	93	0	94	39	25	28	7	1.82
39027949--39027980	3	10.7	3	100	0	64	31	0	0	68	0.90
39028154--39028197	11	3.9	11	82	5	52	20	2	2	75	1.03
39028151--39028194	23	1.9	23	90	0	70	22	2	2	72	1.07
39028151--39028197	4	12.2	4	77	8	53	21	2	2	74	1.03
39028151--39028210	27	2.2	27	82	11	70	20	3	3	73	1.12
39028173--39028257	16	5.4	15	70	18	66	18	3	7	70	1.25
39028479--39028529	26	2.0	24	81	11	57	21	1	11	64	1.36
39031520--39031584	32	2.0	32	90	0	103	23	24	10	41	1.86
39043041--39043265	71	3.2	71	91	1	371	21	20	23	34	1.97
39044071--39044109	3	13.3	3	94	5	71	69	0	0	30	0.89
39045155--39045196	20	2.1	20	90	0	66	40	21	21	16	1.91
39045190--39045258	21	3.3	21	81	2	77	28	31	23	15	1.95
39045211--39045258	10	4.7	10	84	2	60	25	31	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39045295--39045324	15	2.0	15	93	0	51	20	3	33	43	1.68
39045308--39045417	21	5.2	21	93	1	184	22	0	32	44	1.53
39045787--39045861	11	6.5	11	73	14	62	69	0	25	5	1.09
39045787--39045859	23	3.1	23	75	11	67	69	0	24	5	1.09
39051245--39051274	3	10.3	3	92	7	53	70	0	0	30	0.88
39052320--39052375	20	2.8	20	88	2	76	39	25	21	14	1.91
39052323--39052375	7	7.7	7	85	4	72	35	26	22	15	1.93
39052362--39052430	21	3.3	21	81	2	77	28	31	23	15	1.95
39052383--39052430	10	4.7	10	84	2	60	25	31	27	16	1.97
39052467--39052496	15	2.0	15	93	0	51	20	3	33	43	1.68
39052480--39052589	21	5.2	21	93	1	184	22	0	32	44	1.53
39052959--39053033	11	6.5	11	73	14	62	69	0	25	5	1.09
39052959--39053031	23	3.1	23	75	11	67	69	0	24	5	1.09
39058740--39058858	59	2.0	59	96	0	220	42	7	19	30	1.79
39060808--39060846	20	2.0	20	85	5	53	33	5	5	56	1.43
39062693--39062740	21	2.2	22	85	3	62	58	20	10	10	1.60
39063414--39063473	21	2.8	22	82	2	77	61	21	10	6	1.50
39066430--39066455	2	13.0	2	100	0	52	50	0	0	50	1.00
39069767--39069813	24	2.0	24	91	0	76	57	8	10	23	1.60
39071911--39071953	21	2.0	21	86	9	59	60	6	0	32	1.23
39075128--39075197	18	3.9	18	77	3	70	35	0	1	62	1.04
39075173--39075222	24	2.1	24	84	0	64	50	0	4	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39075221--39075265	20	2.3	20	84	3	56	37	2	4	55	1.32
39075235--39075272	20	2.0	20	94	5	69	36	2	2	57	1.26
39077623--39077695	24	3.1	24	73	11	62	38	0	4	57	1.18
39077674--39077753	30	2.7	29	76	16	74	41	0	5	53	1.22
39082943--39083045	46	2.2	46	89	6	156	36	4	19	38	1.73
39087525--39087986	227	2.0	227	100	0	924	37	10	20	32	1.86
39100130--39100159	15	1.9	16	93	6	53	60	6	6	26	1.47
39112628--39112699	20	3.6	20	79	5	56	41	12	5	40	1.66
39112628--39112722	40	2.4	40	77	10	97	38	12	5	43	1.65
39112856--39112909	20	2.7	20	82	0	72	37	5	5	51	1.49
39112694--39112970	147	1.9	148	80	5	328	36	15	6	40	1.75
39112954--39113020	20	3.3	21	81	10	59	37	10	4	47	1.58
39112973--39113128	20	7.8	20	75	7	75	40	14	7	38	1.73
39112964--39113191	40	5.7	40	75	6	183	39	14	6	40	1.70
39113064--39113196	20	6.7	20	80	3	133	39	14	4	41	1.66
39113204--39113245	20	2.1	20	82	8	50	35	11	2	50	1.52
39113323--39113381	20	3.0	20	73	9	57	42	15	3	38	1.63
39124685--39124749	24	2.7	24	85	0	94	29	13	6	50	1.66
39126672--39126734	24	2.6	24	87	0	90	25	14	9	50	1.72
39128948--39129000	12	4.4	12	80	15	56	58	0	0	41	0.98
39128949--39128984	17	2.1	17	89	0	54	58	0	0	41	0.98
39138781--39138816	2	18.0	2	94	0	63	0	0	47	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39146796--39146854	23	2.7	21	75	15	57	57	8	5	28	1.50
39147273--39147312	20	2.1	19	85	4	53	55	0	2	42	1.13
39155971--39156017	17	2.6	18	77	16	53	55	4	10	29	1.53
39158569--39158607	6	6.5	6	87	0	51	46	0	30	23	1.53
39159689--39159754	14	4.7	13	71	15	51	1	15	10	72	1.18
39165038--39165116	26	3.0	26	75	3	88	32	5	18	43	1.72
39165086--39165156	20	3.6	20	75	5	56	40	7	15	36	1.74
39165349--39165411	11	5.5	11	83	5	81	41	3	1	53	1.26
39165359--39165427	17	4.1	16	83	12	77	43	1	2	52	1.25
39165356--39165410	6	9.7	6	78	11	62	43	1	1	52	1.22
39165454--39165514	14	4.5	14	85	8	90	36	29	18	16	1.92
39165454--39165514	26	2.3	27	88	5	88	36	29	18	16	1.92
39166110--39166144	9	3.9	9	92	0	52	60	2	0	37	1.12
39166442--39166469	14	2.0	14	100	0	56	21	21	21	35	1.96
39166985--39167297	162	1.9	163	90	2	506	25	15	12	46	1.81
39167394--39167800	30	13.4	30	89	2	589	37	24	3	34	1.73
39167394--39167800	61	6.7	60	88	1	589	37	24	3	34	1.73
39167394--39167800	91	4.5	91	90	1	654	37	24	3	34	1.73
39167758--39168012	58	4.4	59	89	4	367	32	27	4	35	1.78
39167788--39168012	117	1.9	115	92	3	380	31	27	4	36	1.78
39167797--39168047	117	2.1	117	86	5	355	28	28	6	36	1.82
39180071--39180385	37	9.4	31	66	21	136	34	17	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39180015--39180449	68	6.4	68	94	1	728	33	18	20	27	1.96
39179943--39180465	204	2.5	205	89	4	798	34	17	20	26	1.95
39180768--39180830	11	5.5	11	83	5	81	41	3	1	53	1.26
39180778--39180846	17	4.1	16	83	12	77	43	1	2	52	1.25
39180775--39180829	6	9.7	6	78	11	62	43	1	1	52	1.22
39180873--39180933	14	4.5	14	85	8	90	36	29	18	16	1.92
39180873--39180933	26	2.3	27	88	5	88	36	29	18	16	1.92
39181530--39181564	9	3.9	9	92	0	52	60	2	0	37	1.12
39181862--39181889	14	2.0	14	100	0	56	21	21	21	35	1.96
39182402--39182716	163	1.9	164	89	2	492	25	15	13	46	1.81
39182809--39183188	30	12.5	30	88	1	553	36	24	4	34	1.76
39182809--39183188	61	6.3	60	90	2	562	36	24	4	34	1.76
39182902--39182956	19	3.3	19	63	36	54	41	27	3	27	1.72
39182814--39183188	91	4.1	91	92	0	599	37	24	4	34	1.75
39182841--39183399	61	9.4	58	84	9	464	34	25	4	35	1.76
39183024--39183399	60	6.4	59	89	4	348	33	26	4	35	1.77
39183174--39183400	29	7.8	29	67	17	130	31	28	4	36	1.77
39183185--39183435	58	4.3	59	86	3	276	28	28	5	36	1.81
39183185--39183435	117	2.1	117	86	2	344	28	28	5	36	1.81
39184856--39184889	17	1.9	18	88	5	52	26	11	26	35	1.91
39185699--39185741	18	2.3	19	84	15	63	37	4	0	58	1.19
39194280--39194332	22	2.4	22	81	9	63	56	1	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39194304--39194340	19	1.9	19	88	0	56	59	0	0	40	0.97
39194319--39194377	23	2.5	24	75	8	66	59	1	1	37	1.18
39195436--39195503	28	2.4	28	78	7	75	32	2	4	60	1.32
39197232--39197297	30	2.2	31	83	8	82	42	3	6	48	1.43
39200427--39200717	51	5.6	51	88	3	388	32	14	22	29	1.94
39204283--39204386	28	3.8	28	77	7	113	37	8	22	31	1.84
39204327--39204379	27	2.0	27	85	7	72	39	7	20	32	1.81
39204173--39204446	143	1.9	145	83	5	360	38	7	22	32	1.81
39204440--39204519	30	2.7	30	85	12	103	33	3	25	37	1.74
39205828--39205876	12	4.1	12	83	0	53	46	4	0	48	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135