genome.fa.s10.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  16  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6997126--6997177	18	2.7	20	72	25	56	50	0	0	50	1.00
6997949--6997986	17	2.2	17	90	0	58	26	0	2	71	1.00
6999768--6999814	20	2.5	19	83	16	62	65	0	0	34	0.93
7000190--7000261	36	2.1	35	92	5	119	50	1	1	47	1.18
7000179--7000276	29	3.2	29	77	20	101	43	1	1	54	1.14
7000226--7000286	29	2.1	29	84	6	79	49	0	1	49	1.10
7000378--7000449	27	2.7	27	86	0	108	19	30	19	30	1.96
7004170--7004194	11	2.3	11	100	0	50	60	0	24	16	1.36
7005464--7005529	28	2.4	28	97	0	123	43	24	22	9	1.82
7008567--7008608	15	2.7	16	85	10	52	35	0	2	61	1.09
7008567--7008608	18	2.3	18	87	4	57	35	0	2	61	1.09
7010483--7010512	15	2.0	15	100	0	60	20	13	0	66	1.24
7012144--7012194	16	3.2	16	88	0	66	23	9	11	54	1.66
7013560--7013593	7	4.7	7	96	3	59	70	0	0	29	0.87
7014688--7014763	31	2.5	31	100	0	152	42	2	7	47	1.46
7017581--7017617	17	2.2	17	90	0	56	59	2	0	37	1.12
7018317--7018495	29	6.1	29	70	23	126	38	27	0	34	1.57
7018326--7018687	59	6.2	58	88	3	478	34	30	0	34	1.64
7018343--7018687	118	2.9	118	89	1	532	34	30	0	34	1.64
7018650--7018712	29	2.1	29	82	8	74	28	22	3	46	1.67
7018382--7018740	177	2.0	175	85	4	472	33	28	2	35	1.70
7018700--7018753	28	1.9	28	85	7	74	33	22	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7020670--7020744	30	2.6	29	79	6	89	50	6	0	42	1.28
7022989--7023039	22	2.3	23	80	13	61	27	5	3	62	1.36
7022997--7023038	22	2.0	22	90	4	68	28	4	4	61	1.36
7023022--7023057	10	3.9	10	79	20	51	19	5	0	75	1.00
7023023--7023061	17	2.3	17	100	0	78	17	5	0	76	0.96
7023865--7023894	13	2.2	14	94	5	53	66	0	0	33	0.92
7049691--7049837	75	2.0	74	85	4	197	36	8	18	36	1.82
7051934--7051986	7	7.6	7	91	0	79	35	9	26	28	1.87
7054978--7055048	29	2.4	29	100	0	142	11	33	9	45	1.73
7057673--7057751	31	2.6	31	86	7	101	37	2	7	51	1.44
7060895--7061040	58	2.5	58	81	11	174	45	2	1	50	1.24
7061123--7061227	46	2.5	44	82	13	114	37	25	5	31	1.80
7061134--7061227	44	2.1	44	86	7	127	37	26	5	30	1.79
7061209--7061280	16	4.5	16	96	0	135	26	31	5	36	1.80
7061442--7061566	61	2.1	61	80	1	135	36	4	17	42	1.68
7061995--7062105	31	3.7	29	73	12	71	37	8	10	43	1.69
7077543--7077586	20	2.3	20	84	7	56	40	0	2	56	1.11
7077624--7077661	15	2.6	15	88	12	53	68	0	0	31	0.90
7077750--7077791	3	14.0	3	100	0	84	33	0	0	66	0.92
7080655--7080703	21	2.5	20	83	9	64	59	4	14	22	1.52
7097846--7097895	26	1.9	26	84	8	66	56	20	14	10	1.66
7100616--7100668	15	3.5	15	76	7	63	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7100627--7100671	14	3.1	14	76	17	56	33	0	4	62	1.15
7100802--7100846	18	2.5	18	88	0	63	48	0	0	51	1.00
7100801--7100841	14	2.9	14	88	0	55	46	0	0	53	1.00
7105598--7105639	20	2.0	21	86	4	59	61	2	2	33	1.21
7106262--7106331	31	2.3	30	87	7	97	41	7	7	44	1.59
7109789--7109949	63	2.4	64	83	9	191	28	10	6	54	1.60
7110505--7110544	4	9.2	4	89	10	53	45	0	0	55	0.99
7111322--7111364	18	2.4	18	88	7	61	53	0	0	46	1.00
7116272--7116312	3	13.7	3	100	0	82	31	0	0	68	0.90
7118379--7118421	14	2.9	15	72	6	52	60	0	6	32	1.23
7125655--7125686	4	7.8	4	96	3	55	46	0	0	53	1.00
7126361--7126385	7	3.6	7	100	0	50	28	28	12	32	1.92
7127809--7127859	21	2.5	20	84	9	66	37	13	1	47	1.55
7132144--7132206	28	2.2	28	83	5	74	26	22	4	46	1.72
7133110--7133149	21	1.9	21	85	10	55	50	5	5	40	1.46
7133584--7133677	38	2.4	37	83	11	118	51	5	3	40	1.41
7138218--7138246	3	9.7	3	100	0	58	34	0	0	65	0.93
7139026--7139059	16	2.1	16	94	0	59	55	2	5	35	1.39
7149719--7149751	13	2.4	14	90	5	50	57	6	3	33	1.38
7153681--7153711	6	5.2	6	96	0	53	3	80	0	16	0.83
7153783--7153831	3	16.3	3	82	0	62	0	75	0	24	0.80
7154055--7154099	6	7.5	6	92	0	72	0	82	4	13	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7154382--7154410	6	4.8	6	100	0	58	13	68	0	17	1.20
7154514--7154595	33	2.5	33	82	4	85	19	48	18	13	1.80
7154547--7154614	33	2.1	33	85	0	91	14	47	22	16	1.82
7167541--7167580	20	2.0	20	90	9	64	70	7	5	17	1.30
7171889--7171957	35	1.9	36	91	2	113	31	0	5	62	1.19
7173081--7173113	3	11.0	3	100	0	66	33	33	0	33	1.58
7174656--7174709	18	3.0	18	79	12	58	20	42	7	29	1.79
7174676--7174710	18	1.9	18	94	0	61	20	42	11	25	1.85
7177360--7177398	17	2.2	17	86	9	51	30	2	0	66	1.05
7177338--7177409	19	4.0	17	72	20	58	31	1	2	63	1.17
7177348--7177409	26	2.3	27	81	8	74	32	1	1	64	1.13
7196754--7196786	16	2.0	17	94	5	59	27	0	0	72	0.85
7196741--7196796	28	2.0	28	85	0	76	28	0	1	69	0.98
7209774--7209820	17	2.8	17	87	3	60	63	6	4	25	1.36
7214066--7214129	30	2.3	29	81	10	71	34	0	4	60	1.17
7219186--7219270	31	2.8	30	82	5	100	35	11	12	40	1.80
7219412--7219492	31	2.7	30	83	7	92	46	12	7	33	1.69
7220778--7220863	30	2.9	28	75	13	75	41	17	2	38	1.62
7222693--7222740	26	1.9	24	87	8	69	54	2	2	41	1.24
7222735--7222760	12	2.2	12	100	0	52	69	7	0	23	1.14
7222737--7222857	41	3.0	41	95	0	206	62	13	4	19	1.46
7223623--7223688	33	2.2	31	81	13	75	42	15	10	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7236874--7236901	6	4.7	6	100	0	56	17	46	0	35	1.49
7236874--7236921	18	2.7	18	83	0	60	16	39	4	39	1.68
7241073--7241176	31	3.4	30	76	7	93	50	5	2	41	1.41
7244739--7244769	10	3.1	10	100	0	62	9	22	19	48	1.78
7258890--7258922	17	1.9	17	88	11	50	24	6	6	63	1.40
7261258--7261293	16	2.3	16	90	4	56	41	5	5	47	1.50
7261609--7261683	32	2.4	32	84	2	89	45	5	4	45	1.45
7269598--7269697	50	2.0	50	96	0	182	53	11	19	17	1.73
7270098--7270135	18	2.1	19	95	5	69	39	23	10	26	1.87
7270215--7270280	26	2.7	26	81	6	84	77	4	9	9	1.12
7274333--7274372	15	2.7	15	84	3	55	37	20	0	42	1.52
7274575--7274911	167	2.0	167	98	0	647	29	20	8	41	1.81
7281611--7281794	73	2.6	71	78	4	201	34	12	22	29	1.91
7288739--7288783	3	15.0	3	85	0	63	33	40	0	26	1.57
7288840--7288869	15	2.0	15	93	0	51	43	20	20	16	1.88
7292464--7292646	37	5.3	34	71	13	108	31	15	25	27	1.96
7292453--7292646	102	1.9	102	93	0	334	30	16	24	27	1.96
7292498--7292727	33	6.9	32	72	9	145	30	16	26	26	1.97
7292600--7292679	34	2.4	32	85	8	106	30	15	26	28	1.96
7294019--7294132	46	2.5	46	88	0	156	45	21	17	14	1.85
7294022--7294132	23	4.8	23	78	0	132	44	22	18	15	1.87
7296032--7296088	21	2.7	21	77	0	60	29	12	24	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7302340--7302408	32	2.1	33	81	7	79	36	11	4	47	1.60
7302483--7302548	28	2.4	28	80	12	84	10	16	0	72	1.11
7313522--7313581	23	2.6	23	78	7	68	41	20	8	30	1.81
7313693--7313725	11	2.8	12	86	9	50	51	12	18	18	1.76
7317078--7317124	18	2.6	18	82	0	58	27	36	19	17	1.93
7319699--7319743	21	2.3	21	85	11	60	35	8	11	44	1.71
7321794--7321818	7	3.6	7	100	0	50	28	0	72	0	0.86
7322376--7322440	26	2.6	26	76	11	64	43	15	1	40	1.56
7324181--7324232	10	5.1	10	79	6	52	40	1	0	57	1.10
7324181--7324223	20	2.1	21	86	4	61	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135