genome.fa.s10.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  53  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18589132--18589199	19	3.3	20	75	25	70	64	10	0	25	1.24
18589111--18589206	43	2.3	42	83	7	131	59	13	0	27	1.35
18589135--18589206	20	3.5	21	75	20	80	62	12	0	25	1.30
18598171--18598236	31	2.1	31	91	0	105	43	9	12	34	1.73
18600427--18600480	18	3.0	18	100	0	108	38	16	11	33	1.84
18601160--18601197	20	1.9	20	88	0	58	55	5	13	26	1.59
18601513--18601644	58	2.3	58	84	2	167	52	15	0	31	1.48
18601592--18601682	42	2.2	40	81	13	96	50	16	0	32	1.45
18602123--18602198	34	2.2	34	92	0	125	34	14	14	36	1.87
18623965--18624016	23	2.2	24	86	6	79	48	0	13	38	1.43
18626665--18626702	15	2.5	15	95	0	67	10	21	26	42	1.85
18632249--18632297	20	2.6	19	78	12	57	42	4	4	48	1.40
18632273--18632384	57	1.9	59	87	3	165	41	3	5	49	1.43
18636225--18636263	18	2.2	19	86	9	55	30	0	2	66	1.05
18637274--18637317	18	2.4	18	81	14	54	50	0	2	47	1.13
18642123--18642177	24	2.4	23	85	8	69	40	27	9	23	1.85
18645735--18645789	24	2.5	21	79	8	56	40	25	9	25	1.85
18648029--18648090	21	2.9	22	78	4	72	50	19	0	30	1.48
18648138--18648199	30	2.0	31	90	3	99	37	0	12	50	1.41
18657778--18657921	52	2.8	52	91	2	236	27	15	25	31	1.95
18657963--18657987	12	2.1	12	100	0	50	24	16	24	36	1.94
18657903--18658047	72	2.0	72	97	0	272	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18657998--18658157	51	3.0	50	77	17	160	25	16	26	31	1.96
18657813--18658159	182	1.9	184	93	3	601	27	15	25	31	1.95
18658714--18658767	24	2.4	23	81	9	58	29	7	27	35	1.84
18661242--18661551	151	2.1	151	98	0	593	22	21	20	35	1.96
18667773--18667797	3	8.3	3	100	0	50	64	0	0	36	0.94
18670483--18670530	24	2.0	24	100	0	96	41	4	8	45	1.53
18677628--18677674	24	2.0	24	91	0	76	31	2	12	53	1.51
18679072--18679117	24	1.9	23	86	8	65	56	6	4	32	1.45
18680159--18680196	17	2.2	17	90	0	58	10	15	0	73	1.09
18680421--18680519	6	17.2	6	71	15	75	40	1	4	54	1.26
18680396--18680519	17	7.2	17	82	3	142	40	1	4	53	1.32
18680421--18680519	23	4.3	22	73	14	76	40	1	4	54	1.26
18681260--18681293	3	11.0	3	87	6	50	61	0	2	35	1.11
18681258--18681288	16	1.9	16	100	0	62	58	0	3	38	1.15
18682226--18682432	30	7.0	29	80	7	172	36	29	3	29	1.74
18682232--18682454	29	7.6	29	78	6	134	36	29	4	30	1.76
18693812--18694207	201	2.0	201	89	0	603	34	18	24	22	1.96
18694184--18694638	208	2.2	209	85	2	619	37	18	21	23	1.94
18706526--18706571	18	2.6	17	86	6	65	17	8	13	60	1.56
18709904--18709931	2	14.0	2	100	0	56	50	0	0	50	1.00
18718237--18718278	19	2.4	17	84	11	50	54	2	4	38	1.34
18718539--18718590	18	2.9	18	97	0	95	7	5	13	73	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18734185--18734738	123	4.5	123	86	2	722	38	18	20	22	1.93
18734185--18734738	245	2.3	246	84	2	731	38	18	20	22	1.93
18734589--18734683	47	2.0	48	89	2	147	42	17	20	20	1.90
18735903--18735955	27	2.0	27	81	7	63	66	5	5	22	1.35
18736557--18736875	30	10.8	30	70	10	194	37	21	7	33	1.82
18736606--18736891	59	4.8	58	77	10	192	36	22	8	33	1.83
18739415--18739484	34	2.1	34	86	0	95	37	8	18	35	1.82
18743610--18743677	3	23.0	3	93	3	111	63	0	36	0	0.95
18743833--18743861	3	9.7	3	100	0	58	0	31	0	68	0.89
18745034--18745095	6	9.8	6	75	19	56	30	1	64	3	1.19
18759122--18759150	8	3.8	8	90	9	51	82	0	17	0	0.66
18759122--18759150	15	1.9	15	100	0	58	82	0	17	0	0.66
18762316--18762374	19	3.1	19	83	14	68	74	0	0	25	0.82
18762322--18762376	27	2.0	27	89	3	83	78	0	0	21	0.76
18762315--18762376	17	3.5	17	80	10	63	75	0	0	24	0.80
18762291--18762373	9	8.9	10	70	18	63	71	0	0	28	0.87
18762487--18762541	19	2.8	20	74	20	53	61	0	12	25	1.31
18766859--18766904	23	2.0	23	100	0	92	30	21	21	26	1.99
18782401--18782441	17	2.6	16	78	21	50	39	2	0	58	1.11
18783243--18783283	21	1.9	21	85	14	57	53	0	0	46	1.00
18790296--18790497	89	2.3	88	81	8	250	37	17	8	36	1.82
18790560--18790741	9	19.0	9	69	15	91	63	1	4	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18790556--18790670	28	4.0	28	74	13	99	66	0	2	29	1.10
18790556--18790639	37	2.2	40	82	10	111	67	1	2	28	1.10
18790542--18790677	59	2.3	59	81	5	150	63	0	2	33	1.15
18790761--18790793	11	3.1	11	91	4	50	30	0	3	66	1.06
18791098--18791266	89	1.9	89	90	2	268	26	8	25	39	1.85
18791098--18791292	89	2.2	90	85	2	252	29	8	25	36	1.85
18794676--18794847	60	2.9	60	82	6	190	23	13	11	52	1.72
18800080--18800147	31	2.2	31	89	7	104	51	20	2	25	1.61
18806309--18806403	27	3.5	28	74	16	83	30	21	17	30	1.96
18807886--18808087	45	4.5	44	82	2	197	21	16	16	45	1.85
18809933--18809975	17	2.5	17	80	0	50	34	2	2	60	1.22
18822254--18822297	18	2.4	18	80	0	61	27	25	20	27	1.99
18823465--18823503	21	1.9	20	94	5	69	51	12	10	25	1.71
18833001--18833244	52	4.7	52	88	2	339	28	15	23	32	1.95
18833001--18833240	103	2.3	103	87	2	329	27	15	23	32	1.95
18834201--18834229	14	2.0	15	93	6	51	48	0	24	27	1.51
18839634--18839826	52	3.7	52	85	1	235	27	13	23	35	1.92
18840783--18840811	14	2.0	15	93	6	51	48	6	24	20	1.74
18843033--18843074	21	2.0	21	95	4	77	50	14	11	23	1.76
18843883--18843913	16	1.9	16	93	0	53	67	3	22	6	1.28
18846452--18846784	52	6.4	52	84	4	404	28	15	21	34	1.94
18846451--18846784	105	3.2	105	88	2	453	28	15	21	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18850239--18850422	52	3.6	51	82	2	208	23	13	26	36	1.92
18855137--18855275	52	2.7	52	85	5	176	25	13	22	38	1.91
18860772--18860818	21	2.5	18	75	21	51	42	0	23	34	1.54
18861676--18862017	52	6.6	52	89	1	490	26	16	24	33	1.96
18862701--18862752	22	2.5	22	87	6	72	28	19	21	30	1.97
18867694--18867748	27	2.1	26	90	6	85	50	1	14	32	1.53
18868368--18868426	31	1.9	31	86	3	84	47	13	6	32	1.69
18868895--18868933	16	2.5	15	76	8	51	33	0	2	64	1.08
18868874--18868983	52	2.1	53	82	1	132	38	1	7	52	1.40
18868890--18868996	53	2.0	53	81	3	126	42	0	4	53	1.22
18885809--18885888	30	2.7	29	77	7	97	47	0	0	52	1.00
18886352--18886384	15	2.2	15	89	10	50	66	0	0	33	0.92
18891885--18891949	32	2.0	32	100	0	130	44	6	24	24	1.76
18896917--18896990	28	2.6	28	86	0	85	27	28	13	31	1.94
18896930--18896997	28	2.4	28	87	0	100	27	30	13	27	1.94
18899439--18899487	20	2.5	20	82	0	62	24	10	28	36	1.88
18909712--18909753	18	2.4	18	88	4	59	16	11	11	59	1.61
18913980--18914004	13	1.9	13	100	0	50	32	0	12	56	1.36
18917106--18917136	16	1.9	16	93	0	53	51	9	9	29	1.66
18932860--18932899	18	2.2	18	86	0	53	50	7	27	15	1.70
18938340--18938460	28	4.2	28	77	3	107	41	22	9	26	1.85
18943673--18943720	20	2.3	21	75	3	53	70	2	0	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18943859--18943892	16	2.0	18	88	11	54	38	0	2	58	1.13
18944610--18944674	35	1.9	33	87	6	94	30	3	1	64	1.18
18947301--18947334	17	2.1	16	88	5	50	61	0	0	38	0.96
18948265--18948297	16	2.0	17	88	5	50	60	9	0	30	1.27
18955622--18955818	82	2.4	81	84	5	236	30	12	22	34	1.91
18955565--18955829	27	9.7	27	74	7	187	29	12	22	35	1.91
18957507--18957555	13	3.8	13	79	17	57	48	10	0	40	1.37
18957507--18957555	25	2.0	25	91	0	80	48	10	0	40	1.37
18960583--18960626	16	2.8	16	86	10	63	63	4	6	25	1.38
18965719--18965750	16	2.1	16	88	11	50	53	3	3	40	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135